Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135100.7 + phase: 0 /pseudo
         (855 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li...   170  2e-42
BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari...   139  6e-33
BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo...   133  3e-31
BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - ...    70  5e-25
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp...    97  2e-20
BG647708 weakly similar to GP|13786450|gb| putative reverse tran...    88  2e-17
BQ148771                                                               81  2e-15
BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At...    62  9e-10
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ...    57  2e-08
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret...    49  8e-06
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot...    42  0.001
BG584442                                                               38  0.019
BG582960                                                               33  0.36
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non...    33  0.36
TC77876 similar to PIR|T05265|T05265 coat protein gamma-COP homo...    31  1.8
AW736247 weakly similar to PIR|T14619|T146 reverse transcriptase...    30  3.0
TC82948                                                                30  3.0
TC85128 similar to PIR|D84577|D84577 probable recA protein [impo...    29  8.8

>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
           {Arabidopsis thaliana}, partial (18%)
          Length = 789

 Score =  170 bits (431), Expect = 2e-42
 Identities = 88/253 (34%), Positives = 145/253 (56%), Gaps = 1/253 (0%)
 Frame = -3

Query: 439 LKNFRPISLCNVIFKVITKVLVNRIRPFLDELVSPFQSNFIPRRGTTDNAIIAQEVVHYM 498
           +  +R I+ CN  +K+I K+L  R++P L  ++SP QS F+P R  +DN +I  +++HY+
Sbjct: 778 VSEYRTIAPCNTQYKIIAKILSKRMQPLLRSIISPSQSAFVPGRAISDNVLITHKILHYL 599

Query: 499 HTSRSQKG-TLALKIYLEKAYDRLDWSFLELTLHDFGFPHHIIGLIMSCVKASDLAILWN 557
             S ++K  ++A+K  + KAYDR+ W+FL   L   GF    I  IM CV     + L N
Sbjct: 598 RQSGAKKHVSMAVKTDMTKAYDRIAWNFLREVLTRLGFHGIWISWIMECVSTVSYSFLIN 419

Query: 558 GAKTNKFKPTKGLRQGDPLSPYLFVLCMEKLAMHIQGKVEDRS*RPIHISKDGPGLSHLT 617
           G    +  P++GLRQGDPLSPYLF+LC E L+   Q  +   +   + ++++ P ++HL 
Sbjct: 418 GGPQGRVLPSRGLRQGDPLSPYLFILCTEVLSGLCQQALRKGTLPGVKVARNCPPINHLL 239

Query: 618 FADDVLLFCEANTQQVQMVIDTLNEFCSASGLKVNVTKSKSMCSKRVPERTKRDIQGISS 677
           FADD + F ++N     +++  ++++ +ASG  +N TKS    S +  +     ++G   
Sbjct: 238 FADDTMFFGKSNASSCAILLSIMDKYRAASGRCIN*TKSAITFSSKTSQAIIDRVKGELK 59

Query: 678 IRLVSNLGHYLGF 690
           I      G YLG+
Sbjct: 58  IAKEGGTGKYLGY 20


>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
           (69%)
          Length = 616

 Score =  139 bits (349), Expect = 6e-33
 Identities = 80/203 (39%), Positives = 120/203 (58%), Gaps = 3/203 (1%)
 Frame = +3

Query: 362 LSSPVLKEEVKDALFSMQSDKAPGPDGFQPLFFKHFWEKTGESLWELVDISFRRGFIDEA 421
           L S     EVK+ALFSM S KAPG DG+   FFK  W   G+S+ + +   F+ GF+ + 
Sbjct: 12  LCSEFTAVEVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKI 191

Query: 422 IVETLLVLIPKENNPTHLKNFRPISLCNVIFKVITKVLVNRIRPFLDELVSPFQSNFIPR 481
           I  T + L+PKE N T +KNFRPI+ C+VI+K+I+K+L +R++  L+ +VS  QS F+  
Sbjct: 192 INCTYVTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKG 371

Query: 482 RGTTDNAIIAQEVVHYMHTSRSQKG---TLALKIYLEKAYDRLDWSFLELTLHDFGFPHH 538
           R   DN I++ E+V     S S+KG      +KI L KAYD  +W F++  + + GFP+ 
Sbjct: 372 RVIFDNIILSHELV----KSYSRKGISPRCMVKIDLXKAYDSXEWPFIKHLMLELGFPYK 539

Query: 539 IIGLIMSCVKASDLAILWNGAKT 561
            +  +M+ +  +      NG  T
Sbjct: 540 FVNWVMAXLTTASYTFNXNGDLT 608


>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
           Arabidopsis thaliana, partial (7%)
          Length = 687

 Score =  133 bits (334), Expect = 3e-31
 Identities = 73/203 (35%), Positives = 109/203 (52%)
 Frame = +2

Query: 292 FFHTQTIVRRKHNKIHGLHLDDGTWCTYDTQLQKTAISFYQNLFQKDRTVNPHSLRVPLI 351
           FFH++   RRK N+I  L  + G WC  +  +++  I+++ NLF              + 
Sbjct: 35  FFHSKASQRRKVNEIKKLKDETGNWCKGEENVERLLITYFNNLFTSSNPTAIEETCEVVK 214

Query: 352 PTLCALGIRSLSSPVLKEEVKDALFSMQSDKAPGPDGFQPLFFKHFWEKTGESLWELVDI 411
             L    I        +EEV +A+  M   KAPGPDG   LFF+ +W   G+ + ++V  
Sbjct: 215 GKLSHEHIVWCEKEFTEEEVLEAINQMHPVKAPGPDGLPALFFQKYWHIVGKEVQQMVLQ 394

Query: 412 SFRRGFIDEAIVETLLVLIPKENNPTHLKNFRPISLCNVIFKVITKVLVNRIRPFLDELV 471
                   E + +T +VLIPK  NP   K++RPISLCNV+ K+ITKV+ NR++  L +++
Sbjct: 395 VLNNSMETEELNKTFIVLIPKGKNPNTPKDYRPISLCNVVMKIITKVIANRVKQTLPDVI 574

Query: 472 SPFQSNFIPRRGTTDNAIIAQEV 494
              QS F+  R  TDNA+IA  V
Sbjct: 575 DVEQSAFVQGRLITDNALIAWSV 643


>BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - Arabidopsis
           thaliana, partial (17%)
          Length = 677

 Score = 69.7 bits (169), Expect(2) = 5e-25
 Identities = 35/87 (40%), Positives = 51/87 (58%)
 Frame = +3

Query: 393 FFKHFWEKTGESLWELVDISFRRGFIDEAIVETLLVLIPKENNPTHLKNFRPISLCNVIF 452
           FF+H W      L ++V+     G +D  +  T + LIPK+  PT +   RPISLCNV +
Sbjct: 411 FFQHSWHIIKMDLLKMVNSFLASGKLDTRLNTTNICLIPKKKRPTRMTELRPISLCNVGY 590

Query: 453 KVITKVLVNRIRPFLDELVSPFQSNFI 479
           K+I+KVL  R++  L  L+S  QS F+
Sbjct: 591 KIISKVLCQRLKVCLPSLISETQSAFV 671



 Score = 63.9 bits (154), Expect(2) = 5e-25
 Identities = 34/103 (33%), Positives = 53/103 (51%)
 Frame = +2

Query: 292 FFHTQTIVRRKHNKIHGLHLDDGTWCTYDTQLQKTAISFYQNLFQKDRTVNPHSLRVPLI 351
           F+H  T  R   N+I GL+  DG W T +  ++K A+ ++++LFQ+            + 
Sbjct: 107 FYHALTKQRHARNRIVGLYDYDGNWITEEQGVEKVAVDYFEDLFQRTTPTGFDGFLDEIT 286

Query: 352 PTLCALGIRSLSSPVLKEEVKDALFSMQSDKAPGPDGFQPLFF 394
            ++     + L     +EEV+ ALF M  +KAPGPDG   L F
Sbjct: 287 SSITPQMNQRLLRLATEEEVRLALFIMHPEKAPGPDGMTTLLF 415


>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
           Arabidopsis thaliana, partial (6%)
          Length = 951

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 91/335 (27%), Positives = 147/335 (43%), Gaps = 5/335 (1%)
 Frame = +2

Query: 420 EAIVETLLVLIPKENNPTHLKNFRPISLCNVIFKVITKVLVNRIRPFLDELVSPFQSNFI 479
           + I  T + LIPK +NP  L +FRPISL   ++K++ K+L NR+R  +  ++S  QS F+
Sbjct: 44  KGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILGKLLANRLRVVIGSVISDAQSAFV 223

Query: 480 PRRGTTDNAIIAQEVVHYMHTSRSQKGTLALKIYLEKAYDR---LDWSFLELTLHDFGFP 536
             R   +   + Q  + +M     +K    L+  L++       L W      L   G  
Sbjct: 224 KNRQILEMVFL*QMRL-WMRLRN*RKIFCCLRWILKRLITLSIGLIW-----ILF*VGMS 385

Query: 537 HHIIGL--IMSCVKASDLAILWNGAKTNKFKPTKGLRQGDPLSPYLFVLCMEKLAMHIQG 594
             ++    I  CV  +  ++L NG+ TN     K L Q    + Y F +           
Sbjct: 386 FLVLWRKWIKECVSTATTSVLVNGSPTNVLM--KSLVQTQLFTRYSFGVV---------- 529

Query: 595 KVEDRS*RPIHISKDGPGLSHLTFADDVLLFCEANTQQVQMVIDTLNEFCSASGLKVNVT 654
                   P+ +S       HL FA+D LL    N   ++ +   L  F + SGLKVN  
Sbjct: 530 -------NPVVVS-------HLQFANDTLLLETKNWANIRALRAALVIF*AMSGLKVNFH 667

Query: 655 KSKSMCSKRVPERTKRDIQGISSIRLVSNLGHYLGFPLVQGRVTNETYKHIIEKMHHRLA 714
           KS  +C    P     +   + S ++      YLG P+         ++ I+ ++  RL 
Sbjct: 668 KSGLVCVNIAPSWLS-EAASVLSWKVGKVPFLYLGMPIEGNSRRLSFWEPIVNRIKARLT 844

Query: 715 SWKGKLLNKSGRVCLEKSVTTSMPVYSMQINLLRK 749
            W  + L+  GR+ L KSV TS+ VY++  + L +
Sbjct: 845 GWNSRFLSFGGRLVLLKSVLTSLSVYALPSSKLHQ 949


>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
           {Oryza sativa}, partial (9%)
          Length = 708

 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 45/107 (42%), Positives = 65/107 (60%)
 Frame = +1

Query: 566 PTKGLRQGDPLSPYLFVLCMEKLAMHIQGKVEDRS*RPIHISKDGPGLSHLTFADDVLLF 625
           P KGLRQGDPLSPYLF+LC   L+  ++ +   ++   I +++  P ++HL FADD LLF
Sbjct: 4   PEKGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQVARSDPKITHLLFADDSLLF 183

Query: 626 CEANTQQVQMVIDTLNEFCSASGLKVNVTKSKSMCSKRVPERTKRDI 672
             AN  +   ++  L+ + SASG  VN  KS+   S+ VP + K  I
Sbjct: 184 ARANLTEAATIMQVLHSYQSASGQLVNFEKSEVSYSQNVPNQEKEMI 324


>BQ148771 
          Length = 680

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 45/144 (31%), Positives = 76/144 (52%)
 Frame = -3

Query: 698 TNETYKHIIEKMHHRLASWKGKLLNKSGRVCLEKSVTTSMPVYSMQINLLRKELCDGIDK 757
           T ++   +  ++H  LA+WK   L+ + RV L KSV  ++P+Y M   ++ K   + I K
Sbjct: 618 TKKSRFSVYYQVHVMLANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACIEEIQK 439

Query: 758 ITKSFIWGGNGVT*KWNMVKWTTVTSPRKFGGLAIRDARNTNLALLGKLVWSLLHDKNKL 817
           + + F+WG   V+ +++ V W T++ P+   GL +R     N A + KL WS+    N L
Sbjct: 438 LQRKFVWGDTEVSRRYHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSGSNSL 259

Query: 818 WVRLLSGKIY*EWLFMEQRSSEKP 841
              ++ GK Y     +E+   EKP
Sbjct: 258 CTEVMRGK-YQRSESLEEIFLEKP 190


>BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
           [imported] - Arabidopsis thaliana, partial (16%)
          Length = 794

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 42/137 (30%), Positives = 66/137 (47%), Gaps = 3/137 (2%)
 Frame = +3

Query: 292 FFHTQTIVRRKHNKIHGLHLDDGTWCTYDTQLQKTAISFYQNLFQKDR---TVNPHSLRV 348
           FFH  T  RR  N+I  L  DD      +  L + A S ++ L+  +    T+   +  +
Sbjct: 189 FFHAVTKNRRAQNRILSLIDDDDKEWFVEEDLGRLADSHFKLLYSSEDVGITLEDWN-SI 365

Query: 349 PLIPTLCALGIRSLSSPVLKEEVKDALFSMQSDKAPGPDGFQPLFFKHFWEKTGESLWEL 408
           P I T        L + + +EEV++A+F +   K PGPDG    FF+ FW+  G+ L  +
Sbjct: 366 PAIVT--EEQNAQLMAQISREEVREAVFDINPHKCPGPDGMNVFFFQQFWDTMGDDLTSM 539

Query: 409 VDISFRRGFIDEAIVET 425
                R G ++E I +T
Sbjct: 540 AQEFLRTGKLEEGINKT 590



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 30/91 (32%), Positives = 51/91 (55%), Gaps = 5/91 (5%)
 Frame = +1

Query: 406 WELVDISFRR-----GFIDEAIVETLLVLIPKENNPTHLKNFRPISLCNVIFKVITKVLV 460
           WE++   +R+     G +     +    L+PK+     L  FRPISLCNV +K+++KVL 
Sbjct: 517 WEMISHLWRKNSSEQGNLKRESTKQTSGLVPKKLEAKRLVEFRPISLCNVAYKIVSKVLS 696

Query: 461 NRIRPFLDELVSPFQSNFIPRRGTTDNAIIA 491
            R++  L  +++  Q+ F  R+  +DN +IA
Sbjct: 697 KRLKSVLPWIITETQAAFGRRQLISDNILIA 789


>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
           partial (1%)
          Length = 441

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 41/124 (33%), Positives = 59/124 (47%)
 Frame = +3

Query: 568 KGLRQGDPLSPYLFVLCMEKLAMHIQGKVEDRS*RPIHISKDGPGLSHLTFADDVLLFCE 627
           +GL+QGDPL+P+LF+L  E ++  ++  V     +   + + G  +SHL +ADD L    
Sbjct: 24  RGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRGGTRVSHLQYADDTLCIGM 203

Query: 628 ANTQQVQMVIDTLNEFCSASGLKVNVTKSKSMCSKRVPERTKRDIQGISSIRLVSNLGHY 687
                +  +   L  F  ASGLKVN  KS S+    VP           + R  S    Y
Sbjct: 204 PTVDNLWTLKALLQGFEMASGLKVNFHKS-SLIGINVPRDFMEAACRFLNCREESIPFIY 380

Query: 688 LGFP 691
           LG P
Sbjct: 381 LGLP 392


>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
           {Oryza sativa (japonica cultivar-group)}, partial (1%)
          Length = 625

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 23/53 (43%), Positives = 36/53 (67%)
 Frame = +2

Query: 540 IGLIMSCVKASDLAILWNGAKTNKFKPTKGLRQGDPLSPYLFVLCMEKLAMHI 592
           IG  M CV+++D  +L N    +   P++GL+QGD LSPY+F++C+E L+  I
Sbjct: 89  IGCFM-CVESNDYYVLVNNDAVDPIIPSRGLQQGDHLSPYIFIICVEGLSFLI 244



 Score = 34.7 bits (78), Expect = 0.16
 Identities = 19/59 (32%), Positives = 29/59 (48%)
 Frame = +3

Query: 647 SGLKVNVTKSKSMCSKRVPERTKRDIQGISSIRLVSNLGHYLGFPLVQGRVTNETYKHI 705
           SG  +++ KS   CS+ VP+  K  I  I  ++ +     YLG P + GR    T+  I
Sbjct: 372 SGKAISLRKS*IYCSRNVPDILKTSITYILGVQFMLGTCKYLGLPSMIGRDRTTTFSSI 548


>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
           dioxygenase1 {Pisum sativum}, partial (43%)
          Length = 1865

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 19/39 (48%), Positives = 25/39 (63%)
 Frame = -3

Query: 784 PRKFGGLAIRDARNTNLALLGKLVWSLLHDKNKLWVRLL 822
           PR  GGL +RD R  N++LL K  W LL D++ LW  +L
Sbjct: 963 PRCKGGLGVRDIRLVNVSLLAKWWWRLLQDQSSLWKEVL 847


>BG584442 
          Length = 775

 Score = 37.7 bits (86), Expect = 0.019
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
 Frame = +1

Query: 717 KGKLLNKSGRVCLEKSVTTSMPVYSMQINLLRKELCDGIDKITKSFIWGGNGVT*KWNMV 776
           + K L+K     + K    S+  Y M I LL     D I+KI  +F W   G   K   +
Sbjct: 397 RNKCLSKVM*EVMIKYALQSISSYVMSIFLLLNSQVDEIEKIMNTFSWVHVGENRKG--M 570

Query: 777 KWTT---VTSPRKFGGLAIRDARNTNLALLGKLVWSLLHDKNKLWVRLLS 823
            W +   +   + +GG+   D    N+ +LGK V S L ++  L++  +S
Sbjct: 571 HWMS*EKLFVHKNYGGMGFTDFTTFNIPMLGKQV*SFLLNRTTLFLEKIS 720


>BG582960 
          Length = 852

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +3

Query: 485 TDNAIIAQEVVHYMHTSRSQKGTLALKIYLEKAYDRLDWSFLELTLHDFGFPHHIIG--- 541
           T+N +I +E+       +  +G LALKI + KA D L   FL   L  F F H       
Sbjct: 39  TNNKLILEEINFL--DKKILRGNLALKITMRKALDNLV*EFLLNVLKPFVFKHIFYN*NK 212

Query: 542 LIMSCVKAS 550
            I++CVK S
Sbjct: 213 SILNCVKLS 239


>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
           retroelement reverse transcriptase {Oryza sativa
           (japonica cultivar-group)}, partial (2%)
          Length = 1262

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +1

Query: 799 NLALLGKLVWSLLHDKNKLWVRLLSGK 825
           NL+LLGK  W LL DK  LW R+L  +
Sbjct: 52  NLSLLGKWCWRLLVDKEGLWHRVLKAR 132


>TC77876 similar to PIR|T05265|T05265 coat protein gamma-COP homolog
           T4L20.30 - Arabidopsis thaliana, partial (50%)
          Length = 1746

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/50 (30%), Positives = 31/50 (62%)
 Frame = +1

Query: 427 LVLIPKENNPTHLKNFRPISLCNVIFKVITKVLVNRIRPFLDELVSPFQS 476
           L+L P+++NP HL+  +P+    +++ V+ +V+ ++    + E   PFQS
Sbjct: 493 LILCPRKSNPNHLQRRKPLVKSQLVW-VLLQVVPHQQLMHIRERFPPFQS 639


>AW736247 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
           retrotransposon (fragment), partial (4%)
          Length = 305

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 368 KEEVKDALFSMQSDKA--PGPDGFQPLFFKHFWE 399
           +EEV+ A++   S  +  PGPDG    F K +WE
Sbjct: 127 EEEVRKAVWDCDSSHS*NPGPDGVNFTFVKEYWE 228


>TC82948 
          Length = 705

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 776 VKWTTVTSPRKFGGLAIRDARNTNLALLGKLVWSLLHDKNK 816
           V W  V  P K G L IR     N AL  KL W ++  K +
Sbjct: 267 VSWEKVCRPIKEGSLGIRSLSKLNEALNLKLCWDMMISKEQ 389


>TC85128 similar to PIR|D84577|D84577 probable recA protein [imported] -
           Arabidopsis thaliana, partial (71%)
          Length = 821

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 13/31 (41%), Positives = 18/31 (57%)
 Frame = +3

Query: 402 GESLWELVDISFRRGFIDEAIVETLLVLIPK 432
           GE    LVD   R G ID  +V+++  L+PK
Sbjct: 273 GEQALSLVDTLIRSGSIDVIVVDSVAALVPK 365


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.345    0.152    0.514 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,943,065
Number of Sequences: 36976
Number of extensions: 405617
Number of successful extensions: 3594
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 2041
Number of HSP's gapped (non-prelim): 1764
length of query: 855
length of database: 9,014,727
effective HSP length: 104
effective length of query: 751
effective length of database: 5,169,223
effective search space: 3882086473
effective search space used: 3882086473
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 63 (28.9 bits)


Medicago: description of AC135100.7