BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134824.6 - phase: 0
(2242 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 399 e-111
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 302 8e-82
CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fra... 295 1e-79
AL366605 274 2e-73
AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia... 246 9e-65
AL367832 weakly similar to GP|14091845|gb Putative retroelement ... 241 3e-63
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 152 4e-59
AL375831 172 1e-57
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 179 8e-45
BE942785 134 4e-31
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 115 3e-25
TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC ... 92 2e-18
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 59 1e-17
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 85 4e-16
AL375832 81 5e-15
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 80 9e-15
BE124481 73 1e-12
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ... 66 1e-10
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t... 50 1e-05
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 49 2e-05
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 399 bits (1025), Expect = e-111
Identities = 188/197 (95%), Positives = 194/197 (98%)
Frame = -2
Query: 1641 KSKDCDEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNN 1700
KSKDC+EPLI EGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGH+IPFTARILFECTNN
Sbjct: 591 KSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNN 412
Query: 1701 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYF 1760
MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHA LIPYRDYARRLLTYF
Sbjct: 411 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF 232
Query: 1761 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGE 1820
TKVELHHIPRDENQMADALATLSSMFRVNHWNDVP+IKVQRLERPSHVFAIG+VIDQ GE
Sbjct: 231 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGNVIDQTGE 52
Query: 1821 NVVDYRPWYYDIKQFLL 1837
NVVDY+PWYYDIKQFL+
Sbjct: 51 NVVDYKPWYYDIKQFLV 1
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 302 bits (774), Expect = 8e-82
Identities = 134/167 (80%), Positives = 156/167 (93%)
Frame = -2
Query: 1545 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKT 1604
KTCCALAWAAKRLRHY++NHTTWL+S+MDPIKYIFEK A+TG+IARWQMLLSEYDI +++
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 1605 QKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCDEPLINEGPDPNSKWGLVF 1664
QKAIKGSILADHLA+QPL+DY+PI+FDFPDEEIMYLK KDCDEPL EGPDP+S WGL+F
Sbjct: 455 QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276
Query: 1665 DGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1711
DGAVN YG GIGAV+++P+G HIPFTAR+ F+CTNN+AEYEACI GI
Sbjct: 275 DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135
Score = 48.1 bits (113), Expect = 4e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +2
Query: 1511 CVLGQQDETGKKEHAIYYLSKKFT 1534
CVLGQQDETG+KEHAIYYLS+K +
Sbjct: 38 CVLGQQDETGRKEHAIYYLSRKLS 109
>CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fragment),
partial (9%)
Length = 624
Score = 295 bits (756), Expect = 1e-79
Identities = 145/175 (82%), Positives = 152/175 (86%)
Frame = -2
Query: 432 PVQQQQQQQQQQYTRPTFPPIPMLYAELLPTLLQRGHCTTRQGKPPPDPLPPRFRSDLKC 491
PV QQ+Q QQ RPTFP IPMLYAE LPTLL RGHCT RQGKPPPDPLPPRFRSDLKC
Sbjct: 518 PVHQQRQ*QQ---ARPTFPLIPMLYAE*LPTLLLRGHCTIRQGKPPPDPLPPRFRSDLKC 348
Query: 492 DFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHAAVNMIEVCEEAP 551
DFHQGALGHDVEGCYALK+IVKKLI+QGKLTFENNVPHVLDNPLPNHAAVNMIEV EEAP
Sbjct: 347 DFHQGALGHDVEGCYALKHIVKKLINQGKLTFENNVPHVLDNPLPNHAAVNMIEVYEEAP 168
Query: 552 RLDVRNVVTPLVPLHIKLCKASLFSHDHAKCLGCLRDPLGCHAVQDDIQSSMNDN 606
LDVRNV TPLVPLHIKLC+ASLF HDHA C +PLGC VQ+DIQS MN+N
Sbjct: 167 GLDVRNVTTPLVPLHIKLCQASLFDHDHANCQE*FYNPLGCCVVQNDIQSLMNNN 3
Score = 60.1 bits (144), Expect = 1e-08
Identities = 34/50 (68%), Positives = 38/50 (76%)
Frame = -1
Query: 3 EENTQLRTELASLREELAKAHDAMTALLAAQEQPVPVVSTAANVTPTVTT 52
EEN QLRTELAS+REELAKA+D MTALLAAQEQ S+ + T TV T
Sbjct: 624 EENAQLRTELASMREELAKANDTMTALLAAQEQ-----SSTGSPTTTVAT 490
>AL366605
Length = 422
Score = 274 bits (701), Expect = 2e-73
Identities = 128/139 (92%), Positives = 135/139 (97%)
Frame = -3
Query: 147 EIKANRGNGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDN 206
EIKANRGN DS KTQDLCLVSKVDVPKKFK+P+FD+YNGLTCPQNHI+KYVRKMGNYKDN
Sbjct: 417 EIKANRGNADSFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDN 238
Query: 207 DSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFDELATAFRSHYGFNTRLKPNREFLRSLSQ 266
DSLMIH FQDSLMEDAAEWYTSLSK+D+HTFDELA AF+SHYGFNTRLKPNREFLRSLSQ
Sbjct: 237 DSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQ 58
Query: 267 KKEESFREYAQRWRGAAAR 285
KKEESFREYAQRWRGAAAR
Sbjct: 57 KKEESFREYAQRWRGAAAR 1
>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana chromosome
II BAC F26H6; putative retroelement pol polyprotein,
partial (1%)
Length = 488
Score = 246 bits (627), Expect = 9e-65
Identities = 124/180 (68%), Positives = 139/180 (76%)
Frame = +1
Query: 900 VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLSSF 959
+TFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNG
Sbjct: 1 ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNG------------------- 123
Query: 960 SCIEAGSAEGTAFQGLTIEGAESKEAGAAMASLKDAQRAIQEGQTAGWGKMIQLCENKRK 1019
SAEGTAFQGL++EGAE K+ GAAMASLKDAQ+A+QEGQ A WGK+IQLCENKRK
Sbjct: 124 ------SAEGTAFQGLSMEGAEPKKVGAAMASLKDAQKAVQEGQAADWGKLIQLCENKRK 285
Query: 1020 EGLGFSPSSRVSSGVFHSAGFVNAISEEATGSGLRPIFVTPGGIATNWDAIDIPSIMHVS 1079
EGL FSP+S VS+G FHSAGFVN ++EE RP+FV PGGIA +WDA+D+PSIMHVS
Sbjct: 286 EGLRFSPTSGVSTGTFHSAGFVNTLAEEVARFVPRPLFVIPGGIAKDWDAVDVPSIMHVS 465
>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
sativa}, partial (2%)
Length = 384
Score = 241 bits (614), Expect = 3e-63
Identities = 117/128 (91%), Positives = 122/128 (94%)
Frame = -1
Query: 1123 QEKKAIQPHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMP 1182
QE+KAIQPHQEEIELIN+GTEENKREIK+GA LEEGVK+KI QLLREY DIFA SYEDMP
Sbjct: 384 QERKAIQPHQEEIELINLGTEENKREIKVGAALEEGVKRKIFQLLREYLDIFACSYEDMP 205
Query: 1183 GLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANI 1242
GLDP IVEHRIPTKPECPPVR KLRRTHPDMALKIK+EVQKQIDAGFLMTVEYPEWVANI
Sbjct: 204 GLDPKIVEHRIPTKPECPPVR*KLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI 25
Query: 1243 VPVPKKDG 1250
VPVPKKDG
Sbjct: 24 VPVPKKDG 1
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 152 bits (383), Expect(2) = 4e-59
Identities = 70/136 (51%), Positives = 101/136 (73%)
Frame = +2
Query: 1302 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 1361
M P+D EKT+FIT GT+CYKVMPFGL NAG+TYQR + +F D + +EVY+DDM+VK
Sbjct: 2 MHPDDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVK 181
Query: 1362 SADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 1421
S H+ +L + F+ L +Y ++LNP KCTFGV SG+ LG+IV+Q+GIEV+P ++ AI
Sbjct: 182 SLRATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAIL 361
Query: 1422 EMPAPQTEKQVRGFLG 1437
++P+P+ ++V+ G
Sbjct: 362 DLPSPKNSREVQRLTG 409
Score = 97.1 bits (240), Expect(2) = 4e-59
Identities = 49/120 (40%), Positives = 75/120 (61%)
Frame = +3
Query: 1437 GRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGR 1496
GR+ ++RFIS T C P +KLL N+ VW+++C+EAF+ +K YL PP+L P G
Sbjct: 408 GRIAALNRFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGD 587
Query: 1497 PLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKR 1556
L +Y+A+ ++ VL ++D +K I+Y SK+ TD ETRY LEK A+ +A++
Sbjct: 588 TLSLYIAISSTAVSSVLIREDRGEQK--PIFYTSKRMTDPETRYPTLEKMAFAVITSARK 761
>AL375831
Length = 467
Score = 172 bits (437), Expect(2) = 1e-57
Identities = 80/119 (67%), Positives = 93/119 (77%)
Frame = +2
Query: 87 IPGANLTPVSTALTQAATTVTEPIVNAVPLFVHANAHHGSIATTGTMEERMEELAKELQR 146
IP N + L Q VTEP+V+ +P ++ N H SI T TMEE MEELAKEL+
Sbjct: 8 IPATNAASIIATLPQTTAAVTEPLVHTLPQGININTQHRSIPVTKTMEEMMEELAKELRH 187
Query: 147 EIKANRGNGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKD 205
EI+ANRGN DS+KTQDLCLVSKVDVPKKFK+P+FD+YNGLTCPQNHI+KYVRKMGNYKD
Sbjct: 188 EIQANRGNADSVKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKD 364
Score = 71.2 bits (173), Expect(2) = 1e-57
Identities = 32/36 (88%), Positives = 34/36 (93%)
Frame = +3
Query: 204 KDNDSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFDE 239
K NDSLMIH FQDSLMEDAAEWYTSLSK+D+HTFDE
Sbjct: 360 KTNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDE 467
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 179 bits (455), Expect = 8e-45
Identities = 122/398 (30%), Positives = 199/398 (49%), Gaps = 7/398 (1%)
Frame = +1
Query: 1166 LLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPEC----PPVRQ-KLRRTHPDMALKIKNE 1220
+L E+PD+F +++H IP P+ PP+ L L +K
Sbjct: 343 VLEEFPDLFNPEKAYQVPASRGLLDHAIPLIPDKDGNDPPLPWGPLYGMSRQELLVLKKT 522
Query: 1221 VQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVD 1280
++ +D GF+ A ++ V K G +R CVD+R LN + KD +PLP I +
Sbjct: 523 LEDLLDKGFIKASGSAAG-APVLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETLR 699
Query: 1281 NTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMT 1340
A ++ F+ +D + ++++++ ED+EKT+F T +G F + V PFGL A AT+QR +
Sbjct: 700 RVAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRTRYGLFEWIVCPFGLTGAPATFQRYIN 879
Query: 1341 TLFHDMIHKEVEVYVDDMIV-KSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGK 1399
H+ + V Y+DD+++ + ++ H + ++ RL L L+P KC F V + K
Sbjct: 880 KTLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVLRRLADAGLSLDPKKCEFSVTTVK 1059
Query: 1400 LLGFIVSQ-KGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFK 1458
+GFI++ KG+ DP K+ AIR+ P + K R FLG NY FI + P+ +
Sbjct: 1060 YVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLGFCNYYKDFIPGYSEITEPLTR 1239
Query: 1459 LLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDE 1518
L RK+ P W E + AF +K E P+L + ++G VL Q+D
Sbjct: 1240 LTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTTVETDCSGFALGGVLTQEDG 1419
Query: 1519 TGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKR 1556
TG H + + S++ + E Y + +K A+ WA R
Sbjct: 1420 TG-AAHPVAFHSQRLSPAEYNYPIHDKELLAV-WACLR 1527
>BE942785
Length = 460
Score = 134 bits (337), Expect = 4e-31
Identities = 65/82 (79%), Positives = 72/82 (87%)
Frame = -2
Query: 939 NGKLVTIHGEEAYLVSQLSSFSCIEAGSAEGTAFQGLTIEGAESKEAGAAMASLKDAQRA 998
+G LVTIHGEEAYL+SQLSSFSCIEAGSAEGTAFQGLT+EG E K G AMASLKDAQRA
Sbjct: 378 SGXLVTIHGEEAYLISQLSSFSCIEAGSAEGTAFQGLTVEGTEPKRDGTAMASLKDAQRA 199
Query: 999 IQEGQTAGWGKMIQLCENKRKE 1020
+QE Q AGWG++IQL ENK K+
Sbjct: 198 VQESQAAGWGRLIQLRENKHKD 133
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 115 bits (287), Expect = 3e-25
Identities = 63/196 (32%), Positives = 97/196 (49%)
Frame = +2
Query: 1859 RFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWM 1918
R+L D LYK+ D + +RCV E E ++ H + H K+ +AG++W
Sbjct: 17 RYLWDEPFLYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGFWWP 196
Query: 1919 AMEHDCYQYARKCHKCQIYANKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRF 1978
M D + + KC CQ N N + F +WGID +G +N ++
Sbjct: 197 TMFKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFPSSYNN--KY 370
Query: 1979 ILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALC 2038
ILVA+DY +KWVEA + VV K K+ I R+GVP +I+D G++ N V + L
Sbjct: 371 ILVAVDYVSKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLL 550
Query: 2039 EEFKIEHHNSSPYRPQ 2054
++ + H ++ Y PQ
Sbjct: 551 KKNGVRHKVATAYHPQ 598
>TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC 4.6.1.1)
(ATP pyrophosphate-lyase) (Adenylyl cyclase). [Yeast],
partial (0%)
Length = 665
Score = 92.0 bits (227), Expect = 2e-18
Identities = 54/132 (40%), Positives = 68/132 (50%), Gaps = 3/132 (2%)
Frame = +3
Query: 403 PPFYHQYPLPPGQPQVPVNAIAQQIKQQLPVQQQQQQ---QQQQYTRPTFPPIPMLYAEL 459
PP Q P P QP P Q +Q +P Q Q+ Q Q PIP+ YA+L
Sbjct: 228 PPLVQQRPQSPYQPMCPQKPRQQAPRQSIPQNQVPQKFIPQNQVQKASQCDPIPVKYADL 407
Query: 460 LPTLLQRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQG 519
LP LL++ T P+ LPP +R DL C FHQGA GHD E CY LK V+KLI+
Sbjct: 408 LPILLKKNLIQTLPLPRVPNSLPPWYRPDLNCVFHQGAPGHDTEQCYPLKEEVQKLIENN 587
Query: 520 KLTFENNVPHVL 531
+F++ VL
Sbjct: 588 VWSFDDQDIKVL 623
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 686
Score = 59.3 bits (142), Expect(2) = 1e-17
Identities = 40/122 (32%), Positives = 69/122 (55%), Gaps = 4/122 (3%)
Frame = -3
Query: 2088 LHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL---RVIMEAKLSEAEWCQNRYDQL 2144
L +RT R +T +TPFS+ + +EA+ P EV + SL R+ +L+ ++ L
Sbjct: 462 LWSHRTNPRGATKSTPFSMAHRVEAMAPAEVNVTSL*RSRMPQNIELNN----DRLFNAL 295
Query: 2145 NLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL-KGRISQQPDPRGKWTPNY 2203
IEE+R A+ R Q+YQ ++++ ++K V + K+G++VL K + + GK N+
Sbjct: 294 ETIEERRDQALLRIQNYQHQIESYYNKTVKSQPLKLGDIVLCKVFENTKELNAGKLGTNW 115
Query: 2204 EG 2205
EG
Sbjct: 114 EG 109
Score = 50.4 bits (119), Expect(2) = 1e-17
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = -2
Query: 2015 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI 2066
+G+P +I+TDNG++ +N + CE ++I + +SP PQ NG EA+NK I
Sbjct: 685 HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKII 530
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 84.7 bits (208), Expect = 4e-16
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 5/230 (2%)
Frame = +2
Query: 1189 VEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKK 1248
++ I P P+ R +P +K +++ ++ GF+ YP V ++ + KK
Sbjct: 35 IDFGIDLLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVV-VLFLKKK 211
Query: 1249 DGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDRE 1308
DG +RM +D+ LN + K +PLP ID L DN SK F +D G +Q ++ ED
Sbjct: 212 DGFLRMSIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVIGEDVP 391
Query: 1309 KTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQH 1368
KT+F +G + VM FG N + M +F D + V V+ +D+++ S +E +H
Sbjct: 392 KTAFRIRYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSKNENEH 571
Query: 1369 VEYLTKMFERLRKYKLRLNPNKCTFG-----VRSGKLLGFIVSQKGIEVD 1413
+L + L+ L C V G ++S +G++VD
Sbjct: 572 ENHLRLALKVLKDIGL------CQISYV*ILVEVGFFSLHVISGEGLKVD 703
>AL375832
Length = 535
Score = 80.9 bits (198), Expect = 5e-15
Identities = 38/41 (92%), Positives = 40/41 (96%)
Frame = +3
Query: 1040 FVNAISEEATGSGLRPIFVTPGGIATNWDAIDIPSIMHVSE 1080
FVNAISEEATGSGLRP FVTPGGIA++WDAIDIPSIMHVSE
Sbjct: 3 FVNAISEEATGSGLRPAFVTPGGIASDWDAIDIPSIMHVSE 125
Score = 34.7 bits (78), Expect(2) = 5e-05
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 1078 VSELNHNKPVEHSNPTVPPSFD 1099
+ LNHNKPVEHSN P+FD
Sbjct: 418 ICRLNHNKPVEHSNSMPLPNFD 483
Score = 32.3 bits (72), Expect(2) = 5e-05
Identities = 13/17 (76%), Positives = 14/17 (81%)
Frame = +3
Query: 1100 FPVYEAEDEEGDDIPYE 1116
FPVYE + EGDDIPYE
Sbjct: 483 FPVYEPKMREGDDIPYE 533
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial (14%)
Length = 1708
Score = 80.1 bits (196), Expect = 9e-15
Identities = 75/353 (21%), Positives = 141/353 (39%), Gaps = 15/353 (4%)
Frame = +2
Query: 1887 QLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYANKIHVPPH 1946
+L+ + HD T H G + +++ ++W ++ R C C IH+
Sbjct: 176 KLVQESHDSTAAGHP-GRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVC----GGIHIWRQ 340
Query: 1947 ALNVMSSPWPF-----SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 2001
A P P S +D I + P G +++ V +D +K V + +
Sbjct: 341 AKRGFLKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAE 520
Query: 2002 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEA 2061
A+ + +G+P I++D G+N + C + S+ Y PQ +G E
Sbjct: 521 ACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTER 700
Query: 2062 ANKNIKRIIQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 2120
N+ I+ +++ V +D W ++LP R SS GATPF + +G V P+
Sbjct: 701 WNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGYH-VDPIPTVE 877
Query: 2121 PSLRVIMEAKLSEAEWCQNRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKV 2180
+ V+ E + + + D I+ + + A R ++ + + D+ ++V
Sbjct: 878 DTGGVVSEGEAAAQLLVKRMKDVTGFIQAEIVAAQQRSEASANKRRCPADR------YQV 1039
Query: 2181 GELV---LKGRISQQPDPRGKW------TPNYEGPYVVKKAFSGGALILTHMD 2224
G+ V + S +P + W + P+VV+ G H+D
Sbjct: 1040 GDKVWLNVSNYKSPRPSKKLDWLHHKYEVTRFVTPHVVELNVPGTVYPKFHVD 1198
>BE124481
Length = 538
Score = 73.2 bits (178), Expect = 1e-12
Identities = 42/102 (41%), Positives = 51/102 (49%), Gaps = 3/102 (2%)
Frame = +3
Query: 403 PPFYHQYPLPPGQPQVPVNAIAQQIKQQLPVQQQQQQ---QQQQYTRPTFPPIPMLYAEL 459
PP Q P P QP P Q +Q +P Q Q+ Q Q PIP+ YA+L
Sbjct: 231 PPLVQQRPQSPYQPMCPQKPRQQAPRQSIPQNQVPQKFIPQNQVQKASQCDPIPVKYADL 410
Query: 460 LPTLLQRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHD 501
LP LL++ T P+ LPP +R DL C FHQGA GHD
Sbjct: 411 LPILLKKNLIQTLPLPRVPNSLPPWYRPDLNCVFHQGAPGHD 536
>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(13%)
Length = 415
Score = 66.2 bits (160), Expect = 1e-10
Identities = 38/109 (34%), Positives = 55/109 (49%)
Frame = +3
Query: 1676 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1735
G + SP + + R+ F +NN YEA I G+ A ++I+++ Y DS LV +Q
Sbjct: 3 GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182
Query: 1736 KGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSS 1784
GE+E + Y ++L L IPR EN ADALA L+S
Sbjct: 183 SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALAS 329
>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
partial (6%)
Length = 469
Score = 50.1 bits (118), Expect = 1e-05
Identities = 35/101 (34%), Positives = 52/101 (50%), Gaps = 3/101 (2%)
Frame = +1
Query: 2143 QLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL--KGRISQQPDPRGKWT 2200
+LN +EE R+DA + Y+ R K D+++ REF+ GELVL R+ P GK
Sbjct: 103 ELNELEELRLDAYENAKIYKERTKKWHDRRIIRREFREGELVLLFNSRLKLFP---GKLR 273
Query: 2201 PNYEGPYVVKKAFSGGAL-ILTHMDGVELPNPVNADIVKKY 2240
++ GP+ VK GA+ + + G P VN +K Y
Sbjct: 274 SHWSGPFQVKNVMPSGAVEVWSESTG---PFTVNGQRLKHY 387
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/56 (42%), Positives = 31/56 (54%)
Frame = +1
Query: 1506 DESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYL 1561
D +G L Q+DE EH I Y S+ T E YT++E+ C A WA + RHYL
Sbjct: 7 DWGIGAGLSQKDEENH-EHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYL 171
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,616,320
Number of Sequences: 36976
Number of extensions: 990753
Number of successful extensions: 6474
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 5371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6125
length of query: 2242
length of database: 9,014,727
effective HSP length: 111
effective length of query: 2131
effective length of database: 4,910,391
effective search space: 10464043221
effective search space used: 10464043221
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Medicago: description of AC134824.6