BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134322.6 + phase: 0
(1667 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 198 7e-69
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 202 7e-52
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 185 1e-46
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 178 2e-44
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 167 3e-41
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 159 9e-39
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 143 6e-34
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 80 8e-30
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 122 2e-27
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 115 1e-25
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 106 9e-23
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 98 4e-21
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 95 2e-19
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 90 6e-18
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 81 3e-15
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 70 7e-12
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 70 9e-12
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 67 8e-11
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 62 2e-09
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 57 5e-08
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 198 bits (504), Expect(2) = 7e-69
Identities = 91/141 (64%), Positives = 121/141 (85%)
Frame = -2
Query: 1217 VTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNG 1276
+TRNK++LV QGY+Q+EGIDY E F+PVAR+EAIR+L+++A G LYQMDVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1277 VVEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDT 1336
++EEV+VKQPPGFED + P+HV++L K+LYGLKQAPRAWY+RLS FL+KN F+RG++D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1337 TLFRRTLKKDILIVQIYVDDI 1357
TLF + ++LI+Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 82.8 bits (203), Expect(2) = 7e-69
Identities = 38/62 (61%), Positives = 47/62 (75%)
Frame = -3
Query: 1150 SLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRN 1209
S +S IEPK V+EAL D WI +MQEEL+QF+R+ VW LVP+P K +IGT+WVFRN
Sbjct: 615 SFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRN 436
Query: 1210 KL 1211
KL
Sbjct: 435 KL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 202 bits (515), Expect = 7e-52
Identities = 94/217 (43%), Positives = 144/217 (66%), Gaps = 1/217 (0%)
Frame = +1
Query: 1392 IQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGM 1451
+++ Q++EG+Y+ Q KY +LL++F +E + P+ P C L K++ G VD Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1452 IGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK 1511
+G L+YL A+RPD+++ + L +RF + P E H+ AVKR+ RYL GT NLG++Y+++ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1512 LIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQL 1571
L + D+DYAGD +RKSTSG L +SW+SK+Q + +ST +AE+I+AA C Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1572 LWMKHQLEDY-QINANSIPIYCDNTAAICLSKNPILH 1607
+WM+ LE + SI +YCDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 185 bits (470), Expect = 1e-46
Identities = 97/257 (37%), Positives = 159/257 (61%), Gaps = 5/257 (1%)
Frame = +3
Query: 1152 IGLLSII-EPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNK 1210
+G+L++ +P T EEA+ + W +M E+ +RN+ W+L S IG KW+F+ K
Sbjct: 15 LGMLTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTK 194
Query: 1211 LNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAI---NHGIILYQM 1267
LNE GE+ + KARLVA+GYSQQ G+DYTE FAPVAR + IR++++ A G+ + M
Sbjct: 195 LNENGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M 374
Query: 1268 DVKSAFLNGVVEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKN 1327
+ + + + + + + ++K++LYGLKQAPRAWY R+ + K
Sbjct: 375 *KAHSCMEN*MRKFLLINH----RVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKE 542
Query: 1328 DFERGQVDTTLFRRTLK-KDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGEL 1386
FE+ + TLF + + ILI+ +YVDD+IF + ++ +EF K M+ EF MS +G++
Sbjct: 543 GFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKM 722
Query: 1387 KFFLGIQINQSKEGVYV 1403
+FLG+++ Q+++G+Y+
Sbjct: 723 HYFLGVEVTQNEKGIYI 773
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 178 bits (451), Expect = 2e-44
Identities = 95/199 (47%), Positives = 126/199 (62%)
Frame = +1
Query: 1167 LSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVA 1226
LSD W+ AM+ E N WDLVP P K IG KWV+R K N G V + KARLVA
Sbjct: 82 LSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVA 261
Query: 1227 QGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVVEEEVYVKQ 1286
+G+SQ G DYTETF+PV + IRL+L+ AI + + Q+D+ +AFLNG ++EEVY+ Q
Sbjct: 262 KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441
Query: 1287 PPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKD 1346
P GFE + V KL KSLYGLKQAPRAWY+ L++ I+ F + + D +L
Sbjct: 442 PQGFE-AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGA 618
Query: 1347 ILIVQIYVDDIIFGSTNAS 1365
+ + IYVDDI+ ++AS
Sbjct: 619 CIYLXIYVDDILITGSSAS 675
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 167 bits (423), Expect = 3e-41
Identities = 83/183 (45%), Positives = 116/183 (63%)
Frame = -1
Query: 1160 PKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTR 1219
P++ EEA+ D W ++ E +ND W P K + ++W+F K G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 1220 NKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVVE 1279
K RLVA+G++ G DY ETFAPVA+L IR++LS A+N G L+QMDVK+AFL G +E
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1280 EEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLF 1339
+EVY+ PPG E L +V +LKK++YGLKQ+PRAWY++LS L F + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1340 RRT 1342
T
Sbjct: 18 TLT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 159 bits (402), Expect = 9e-39
Identities = 88/240 (36%), Positives = 134/240 (55%)
Frame = +2
Query: 1299 VYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDII 1358
V +L+KS+YGLKQA R WY +LS LI + + D +LF + + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1359 FGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKL 1418
+ S + + D F++ +G L++FLG+++ +SK+G+ ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1419 EDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSD 1478
K TP + L D+ D+ YR +IG L+YLT +RPDI F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1479 PRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLG 1538
P++ H A R+ +YLK GL Y + + KL F D+D+A RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 143 bits (360), Expect = 6e-34
Identities = 73/146 (50%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Frame = +2
Query: 1518 ADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQ 1577
+D+AGD RKSTSG LG ISW+SK+Q +A STAEAEYI++ SC TQ +W++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1578 LEDYQINANS-IPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRNYVQKGILDIQFIDT 1636
LE N+ IYCDN +AI LSKNP+ H R+KHI+I+ H IR + + + I++ T
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1637 EHQWADIFTKPLSVERFEFIKKNLNM 1662
E + ADIFTKPL +E F +KK L M
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGM 439
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 80.5 bits (197), Expect(2) = 8e-30
Identities = 33/100 (33%), Positives = 60/100 (60%)
Frame = +3
Query: 1563 SAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRN 1622
S C + +WM+ +E+ I +YCD+ +A+ +++NP HSR KHI I++HF+R
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVRE 407
Query: 1623 YVQKGILDIQFIDTEHQWADIFTKPLSVERFEFIKKNLNM 1662
V++G +D+Q I T AD TK ++ ++F + + + +
Sbjct: 408 VVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRSSYGL 527
Score = 70.1 bits (170), Expect(2) = 8e-30
Identities = 35/78 (44%), Positives = 52/78 (65%)
Frame = +1
Query: 1487 VKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWAS 1546
VKRI RY+KGT+ + + + S + + G+ D+D+AGD +RKST+G L +SW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGGS-ELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1547 KRQATIAMSTAEAEYISA 1564
K Q +A+ST EAEY++A
Sbjct: 178 KLQTVVALSTTEAEYMAA 231
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 122 bits (305), Expect = 2e-27
Identities = 71/214 (33%), Positives = 107/214 (49%), Gaps = 2/214 (0%)
Frame = +1
Query: 812 LELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQYEK 871
L+ +H DL+GP S G +Y + I+DD+ R WV F++ K+ F + ++ +
Sbjct: 97 LDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQT 276
Query: 872 ELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMI 931
+ K+ +D+ EF + F FC HGI + PR PQQNGV ER RTL E AR M+
Sbjct: 277 GKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCML 456
Query: 932 HENNL--AKHFWAEAVNTSCYIQNRIYIRPMXEXTAYELFKGRRPNISNFHQLGCTXYIL 989
L + W EA +T+C++ NR + +++ G + SN GC Y L
Sbjct: 457 SNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYAL 636
Query: 990 NTKDYLKKLNAKAQRGIFXGYSERSKAYRVYNSE 1023
KL +A IF Y+ SK YR++ S+
Sbjct: 637 VNDG---KLAPRAGECIFLSYASESKGYRLWCSD 729
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 115 bits (289), Expect = 1e-25
Identities = 71/209 (33%), Positives = 113/209 (53%)
Frame = -3
Query: 747 DKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIV 806
+K +WH RLGH + R ++ + LP + + + C AC GK K+ F V
Sbjct: 596 NKDALWHARLGHPHGRALNLM--------LPGVVFENKN-CEACILGKHCKNVFPRTSTV 444
Query: 807 STSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQ 866
+ +L++ DL+ + S KY + +D+ S++TW+ I SKD + F +F
Sbjct: 443 YENC-FDLIYTDLW-TAPSLSRDNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAY 270
Query: 867 IQYEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEM 926
+ KI +RSD+GGE+ + F+ + HGILH+ S P TPQQNGV +RKN+ L E+
Sbjct: 269 VTNHYHAKIKILRSDNGGEYTSYAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEV 90
Query: 927 ARTMIHENNLAKHFWAEAVNTSCYIQNRI 955
AR+++ + N V+T+CY+ N I
Sbjct: 89 ARSLMFQAN---------VSTACYLINWI 30
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 106 bits (264), Expect = 9e-23
Identities = 56/163 (34%), Positives = 93/163 (56%), Gaps = 2/163 (1%)
Frame = +1
Query: 1486 AVKRIFRYLKGTTNLGLLYRKSLDYK--LIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1543
A+K + +YL + L Y K+ + L G+ DADYAG+ RKS SG L IS
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1544 WASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKN 1603
W + +Q+ + +ST +AEYI+ +W+K + + I + I+CD+ +AI L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 1604 PILHSRAKHIEIKHHFIRNYVQKGILDIQFIDTEHQWADIFTK 1646
+ H R KHI+I+ HFIR+ ++ + ++ + +E AD+FTK
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza sativa}
[Oryza sativa (japonica cultivar-group)], partial (8%)
Length = 426
Score = 97.8 bits (242), Expect(2) = 4e-21
Identities = 47/113 (41%), Positives = 68/113 (59%)
Frame = +1
Query: 909 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMXEXTAYEL 968
TPQQNGV ER NRTL E R M+ +AK FWAEAV T+CY+ NR + T E+
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 969 FKGRRPNISNFHQLGCTXYILNTKDYLKKLNAKAQRGIFXGYSERSKAYRVYN 1021
+KG+ + S+ H GC Y++ KL+ K+++ IF GY++ K Y +++
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
Score = 23.5 bits (49), Expect(2) = 4e-21
Identities = 8/22 (36%), Positives = 15/22 (67%)
Frame = +3
Query: 884 GEFENEPFELFCEKHGILHEFS 905
GE+ + F FC++ GI+ +F+
Sbjct: 9 GEYVDGEFLAFCKQEGIVRQFT 74
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 95.1 bits (235), Expect = 2e-19
Identities = 51/122 (41%), Positives = 74/122 (59%), Gaps = 3/122 (2%)
Frame = +1
Query: 1462 RPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLY---RKSLDYKLIGFCDA 1518
RPDI +SV + ++F DPR+ HL A RI RY++GT GLL+ KS Y+LI + D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1519 DYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQL 1578
D+ GD R+STSG + ISW +K+Q A+S+ EAEYI+ Q LW+ +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1579 ED 1580
++
Sbjct: 472 KE 477
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 90.1 bits (222), Expect = 6e-18
Identities = 44/86 (51%), Positives = 61/86 (70%)
Frame = +2
Query: 1191 LVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAI 1250
LV KP+ IG +W+++ K NE G + + KARLVA+GY +Q+GID+ E FAPV R+E I
Sbjct: 65 LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRIETI 244
Query: 1251 RLLLSYAINHGIILYQMDVKSAFLNG 1276
LLL+ A +G ++ +DVK AFLNG
Sbjct: 245 *LLLALAATNGC*IHHIDVKIAFLNG 322
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 81.3 bits (199), Expect = 3e-15
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Frame = +1
Query: 1311 QAPRAWYDRLSNFLIKNDFERGQVDTTLFRR---TLKKDILIVQIYVDDIIFGSTNASLC 1367
Q+PR W+DR + + K + + Q D +F + T+KK ILIV YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 1368 KEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTP 1427
K L+ +EFE+ +G LK+FLG+++ + K+G + Q KY +LLK+ ++ CK + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 1428 MHPTC 1432
C
Sbjct: 355 YGCNC 369
Score = 53.5 bits (127), Expect = 7e-07
Identities = 25/56 (44%), Positives = 35/56 (61%)
Frame = +2
Query: 1420 DCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARF 1475
D K TPM T L D GT+VD+ Y+ ++G L+YL+ +RPDI F VC ++F
Sbjct: 332 DVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 70.1 bits (170), Expect = 7e-12
Identities = 39/104 (37%), Positives = 57/104 (54%)
Frame = -3
Query: 1456 LYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGF 1515
+ LT P+I FS+ L +R+ S P H +K I +YLKG ++GL Y K LIG+
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1516 CDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA 1559
+A Y D + +S +G G +ISW S + +TIA S+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 69.7 bits (169), Expect = 9e-12
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 8/210 (3%)
Frame = -2
Query: 948 SCYIQNRIYIRPMXEXTAYELFKGRRPNISNFHQLGCTXYILNTKDYLKKLNAKAQRGIF 1007
+CY+ NRI R + + +E+ R+P+++ GC Y+L + KL A++++ +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 1008 XGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPS 1067
GYS K Y+ Y+ E + V S VKF + + Q + T+D
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLTSDKAGVLRVILEG 345
Query: 1068 DSEKYTEVESCPEAEITPEAESNS--EAEPSPKVQNESASE-DFQDNTQQVI-----QPK 1119
K + +S + PE SN A +P + +E SE + Q+N Q+ + +
Sbjct: 344 LGIKMNQDQSTRSRQ--PEESSNEPRRAAQTPHLDHEGGSEPETQENGQEGVGLSEEGEE 171
Query: 1120 FKHKSSHPEELIIGSKDSPRRTRSHFRQEE 1149
F S H E G ++ + Q+E
Sbjct: 170 FNSGSHHQGEQDQGDEEHHSEAQEPHIQDE 81
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 66.6 bits (161), Expect = 8e-11
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +2
Query: 1592 CDNTAAICLSKNPILHSRAKHIEIKHHFIRNYVQKGILDIQFIDTEHQWADIFTKPLSVE 1651
CD +A L+ NP+ HSR KHI I HF+R+ VQ+G L +Q + T Q AD TKPLS
Sbjct: 29 CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208
Query: 1652 RFEFIKKNLNM 1662
R + ++ + +
Sbjct: 209 RHQLLRNKIGV 241
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 61.6 bits (148), Expect = 2e-09
Identities = 38/96 (39%), Positives = 52/96 (53%)
Frame = -2
Query: 1241 FAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVVEEEVYVKQPPGFEDLKHPDHVY 1300
F P+ +L I LLS + L +DVK+AFL G + E++Y+ QP GF + V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGF-S*EVGKMVG 378
Query: 1301 KLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDT 1336
KLKKS+YGLKQ PR L + F R ++ T
Sbjct: 377 KLKKSMYGLKQGPRQCI*SLKALCTRKGF-RSEIST 273
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse transcriptase
homolog - rape retrotransposon copia-like (fragment),
partial (84%)
Length = 249
Score = 57.4 bits (137), Expect = 5e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = -1
Query: 1278 VEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNF 1323
+EE++Y+ QP GF DHV KL+KSLYGLKQ+PR WY R ++
Sbjct: 246 LEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSY 109
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.131 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,632,965
Number of Sequences: 36976
Number of extensions: 646931
Number of successful extensions: 3089
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 2960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3062
length of query: 1667
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1558
effective length of database: 4,984,343
effective search space: 7765606394
effective search space used: 7765606394
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)
Medicago: description of AC134322.6