BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134322.24 + phase: 0
(456 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC92002 similar to GP|4104929|gb|AAD02218.1| auxin response fact... 101 1e-31
AW688064 homologue to GP|13272405|gb unknown protein {Arabidopsi... 130 1e-30
TC82637 similar to PIR|G86331|G86331 IAA24 [imported] - Arabidop... 130 1e-30
TC91430 similar to PIR|F86427|F86427 auxin response factor 6 (AR... 130 1e-30
TC85977 similar to GP|10176918|dbj|BAB10162. auxin response fact... 128 4e-30
TC88775 homologue to PIR|F86427|F86427 auxin response factor 6 (... 112 3e-25
TC88776 homologue to PIR|F86427|F86427 auxin response factor 6 (... 61 8e-25
TC89117 similar to GP|12484199|gb|AAG53998.1 auxin response tran... 85 7e-17
TC82150 similar to GP|19352051|dbj|BAB85919. auxin response fact... 75 5e-14
BE325390 weakly similar to GP|13272405|gb| unknown protein {Arab... 71 8e-13
TC93578 similar to GP|9757747|dbj|BAB08228.1 auxin response fact... 56 4e-12
BQ124121 similar to PIR|G86331|G863 IAA24 [imported] - Arabidops... 59 4e-09
TC83162 homologue to PIR|F86427|F86427 auxin response factor 6 (... 51 8e-07
AW695486 homologue to GP|22136676|gb| auxin response factor 1 {A... 46 3e-05
BG644686 similar to GP|22136676|gb| auxin response factor 1 {Ara... 44 1e-04
TC78765 weakly similar to PIR|T47975|T47975 auxin response facto... 41 8e-04
BG646172 homologue to PIR|F86427|F86 auxin response factor 6 (AR... 40 0.001
TC80369 similar to PIR|A86386|A86386 probable DNA-binding protei... 39 0.004
TC85891 similar to PIR|A86386|A86386 probable DNA-binding protei... 36 0.027
TC88323 similar to PIR|T08917|T08917 auxin response factor 9 - A... 33 0.23
>TC92002 similar to GP|4104929|gb|AAD02218.1| auxin response factor 7
{Arabidopsis thaliana}, partial (31%)
Length = 1138
Score = 101 bits (252), Expect(2) = 1e-31
Identities = 52/156 (33%), Positives = 88/156 (56%)
Frame = +3
Query: 65 LCIVSAVDLLADPHTDEVFVKLLLTPITNDVHLENPKEEVANLNDRNEVVSFVKTLTRSD 124
+C++ V L ADP TDEV+ ++ L P+ ++ ++ F KTLT SD
Sbjct: 42 ICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPSEFFCKTLTASD 221
Query: 125 VNNARSFHIPRFCADNVFPQLDLEAESSSQHLFVTDVHGEVSKFYHVCRGFPKRNMLYIS 184
+ F +PR A+ +FP LD + +Q + D++ F H+ RG PKR++L +
Sbjct: 222 TSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLYDTTWTFRHIYRGQPKRHLL-TT 398
Query: 185 EWNSFVKRKKLVAGDSVIFMKDSTGKIFVGIRRNTQ 220
W+ FV K+L AGDSV+F++D ++ +GI+R+++
Sbjct: 399 GWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSR 506
Score = 52.8 bits (125), Expect(2) = 1e-31
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Frame = +1
Query: 241 LKLAEENKAFEIVYYPQGDDWCDFVVDGNVVDESM--KIQWNPRMRVKMKTDKSSRIPYQ 298
L LA N F I Y P+ C+FV+ ++++ + R R+ +T+ S Y
Sbjct: 577 LMLASNNSPFTIFYNPRTSP-CEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYM 753
Query: 299 GTISIVSRT------SNLWRMLQVNWDEFQVSQIPRRVNPWWVELISHKPAPTPF 347
GTI+ +S ++ WR LQV WDE + P RV+ W +E P TPF
Sbjct: 754 GTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIE-----PVVTPF 903
>AW688064 homologue to GP|13272405|gb unknown protein {Arabidopsis thaliana},
partial (15%)
Length = 576
Score = 130 bits (327), Expect = 1e-30
Identities = 64/135 (47%), Positives = 90/135 (66%)
Frame = +1
Query: 83 FVKLLLTPITNDVHLENPKEEVANLNDRNEVVSFVKTLTRSDVNNARSFHIPRFCADNVF 142
F K+ L P+ N LEN + + + SF KTLT+SD NN F +PR+CA+ +F
Sbjct: 1 FSKITLIPLRNS-ELENDDSDGDGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIF 177
Query: 143 PQLDLEAESSSQHLFVTDVHGEVSKFYHVCRGFPKRNMLYISEWNSFVKRKKLVAGDSVI 202
P+LD AE Q + DVHGEV KF H+ RG P+R++L + W+SFV +KKLVAGDS++
Sbjct: 178 PRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLL-TTGWSSFVNQKKLVAGDSIV 354
Query: 203 FMKDSTGKIFVGIRR 217
F++ +G++FVGIRR
Sbjct: 355 FLRAESGELFVGIRR 399
>TC82637 similar to PIR|G86331|G86331 IAA24 [imported] - Arabidopsis
thaliana, partial (28%)
Length = 889
Score = 130 bits (327), Expect = 1e-30
Identities = 74/195 (37%), Positives = 106/195 (53%), Gaps = 1/195 (0%)
Frame = +1
Query: 13 EIWHTCATAAVKIPKLHSRVYYFPQGHLENASPSSSSI-THTHSFLQSFRPFTLCIVSAV 71
E+WH CA V +P++ VYYFPQGH E + S+ I T S LC V V
Sbjct: 139 ELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRIATSQIPNYPSLPSQLLCQVQNV 318
Query: 72 DLLADPHTDEVFVKLLLTPITNDVHLENPKEEVANLNDRNEVVSFVKTLTRSDVNNARSF 131
L AD TDE++ ++ L P+ ++ + P E ++ F KTLT SD + F
Sbjct: 319 TLHADKETDEIYAQMTLQPLNSEKEVF-PVSEFGLSKSKHPTEFFCKTLTASDTSTHGGF 495
Query: 132 HIPRFCADNVFPQLDLEAESSSQHLFVTDVHGEVSKFYHVCRGFPKRNMLYISEWNSFVK 191
+PR A+ +FP LD + +Q L V D+H F H+ RG PKR++L + W+ FV
Sbjct: 496 SVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLL-TTGWSLFVG 672
Query: 192 RKKLVAGDSVIFMKD 206
K+L AGDSV+F++D
Sbjct: 673 SKRLRAGDSVLFIRD 717
>TC91430 similar to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (23%)
Length = 728
Score = 130 bits (326), Expect = 1e-30
Identities = 72/192 (37%), Positives = 103/192 (53%)
Frame = +3
Query: 13 EIWHTCATAAVKIPKLHSRVYYFPQGHLENASPSSSSITHTHSFLQSFRPFTLCIVSAVD 72
E+WH CA V +P SRV YFPQGH E + S++ T+ S P +C + +
Sbjct: 129 ELWHACAGPLVCLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLT 308
Query: 73 LLADPHTDEVFVKLLLTPITNDVHLENPKEEVANLNDRNEVVSFVKTLTRSDVNNARSFH 132
+ AD TDEV+ ++ L P+ + E ++ F K LT SD + F
Sbjct: 309 MHADTETDEVYAQMTLQPLNPEEQKEAYLPAELGTANKQPTNYFCKILTASDTSTHGGFS 488
Query: 133 IPRFCADNVFPQLDLEAESSSQHLFVTDVHGEVSKFYHVCRGFPKRNMLYISEWNSFVKR 192
+PR A+ VFP LD + +Q L D+HG KF H+ RG PKR++L + W+ FV
Sbjct: 489 VPRRAAEKVFPPLDFTQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLL-TTGWSVFVSA 665
Query: 193 KKLVAGDSVIFM 204
K+LVAGDSV+F+
Sbjct: 666 KRLVAGDSVLFI 701
>TC85977 similar to GP|10176918|dbj|BAB10162. auxin response factor-like
protein {Arabidopsis thaliana}, partial (65%)
Length = 3162
Score = 128 bits (322), Expect = 4e-30
Identities = 72/185 (38%), Positives = 98/185 (52%)
Frame = +3
Query: 13 EIWHTCATAAVKIPKLHSRVYYFPQGHLENASPSSSSITHTHSFLQSFRPFTLCIVSAVD 72
E+WH CA V +P+ V+YFPQGH+E S++ + H + RP LC V V
Sbjct: 306 ELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVM 485
Query: 73 LLADPHTDEVFVKLLLTPITNDVHLENPKEEVANLNDRNEVVSFVKTLTRSDVNNARSFH 132
L A+P TDEVF ++ L P N KE R V SF KTLT SD + F
Sbjct: 486 LKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFS 665
Query: 133 IPRFCADNVFPQLDLEAESSSQHLFVTDVHGEVSKFYHVCRGFPKRNMLYISEWNSFVKR 192
+ + AD P LD+ + +Q L D+HG +F H+ RG P+R++L S W+ FV
Sbjct: 666 VLKRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQ-SGWSVFVSS 842
Query: 193 KKLVA 197
K+LVA
Sbjct: 843 KRLVA 857
Score = 50.4 bits (119), Expect = 1e-06
Identities = 42/146 (28%), Positives = 69/146 (46%), Gaps = 16/146 (10%)
Frame = +2
Query: 253 VYYPQGDDWCDFVVDGNVVDESMKIQWNPRMRVKMKTD--KSSRIPYQGTISIVSRT--- 307
VYY +F+V + ES+K + MR KM+ + ++ + GTI + +
Sbjct: 1031 VYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSK 1210
Query: 308 ---SNLWRMLQVNWDEFQVSQIPRRVNPWWVELISHKPA--PTPFPQTKKFR-----TTQ 357
++ WR L+V WDE P RV+PW +E PA P P P+ K+ R ++
Sbjct: 1211 RWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPSSP 1390
Query: 358 SSAQLSDKKETLLNGDGFPVD-IQRV 382
S+ L+ + + ++ D P QRV
Sbjct: 1391 DSSVLTREASSKVSMDPLPTSGFQRV 1468
>TC88775 homologue to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (23%)
Length = 678
Score = 112 bits (280), Expect = 3e-25
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 12/217 (5%)
Frame = +3
Query: 116 FVKTLTRSDVNNARSFHIPRFCADNVFPQLDLEAESSSQHLFVTDVHGEVSKFYHVCRGF 175
F KTLT SD + F +PR A+ VFP LD + +Q L D+HG KF H+ RG
Sbjct: 24 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQ 203
Query: 176 PKRNMLYISEWNSFVKRKKLVAGDSVIFMKDSTGKIFVGIRR--NTQFVAAAAEQKKDEL 233
PKR++L + W+ FV K+LVAGDSV+F+ + ++ +GIRR Q V ++ D +
Sbjct: 204 PKRHLL-TTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSM 380
Query: 234 EKAVM-EALKLAEENKAFEIVYYPQGDDWCDFVVDGNVVDESM---KIQWNPRMRVKMKT 289
++ A A N F I Y P+ +FV+ +++ ++ R R+ +T
Sbjct: 381 HLGLLAAAAHAAATNSRFTIFYNPRACP-SEFVIPLAKYVKAVYHTRVSVGMRFRMLFET 557
Query: 290 DKSSRIPYQGTISIVSRTSNL------WRMLQVNWDE 320
++SS Y GTI+ + +++ WR ++V WDE
Sbjct: 558 EESSVRRYMGTITGICDLNSVRWPNSHWRSVKVGWDE 668
>TC88776 homologue to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (22%)
Length = 1278
Score = 60.8 bits (146), Expect(3) = 8e-25
Identities = 30/80 (37%), Positives = 44/80 (54%), Gaps = 1/80 (1%)
Frame = +3
Query: 13 EIWHTCATAAVKIPKLHSRVYYFPQGHLENASPSSSSITHTH-SFLQSFRPFTLCIVSAV 71
E+WH CA V +P + SRV YFPQGH E + S++ H S P +C + +
Sbjct: 582 ELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNL 761
Query: 72 DLLADPHTDEVFVKLLLTPI 91
+ AD TDEV+ ++ L P+
Sbjct: 762 TMHADVETDEVYAQMTLQPL 821
Score = 48.5 bits (114), Expect(3) = 8e-25
Identities = 23/53 (43%), Positives = 29/53 (54%)
Frame = +1
Query: 116 FVKTLTRSDVNNARSFHIPRFCADNVFPQLDLEAESSSQHLFVTDVHGEVSKF 168
F KTLT SD + F +PR A+ VFP LD + +Q L D+HG KF
Sbjct: 895 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKF 1053
Score = 42.4 bits (98), Expect(3) = 8e-25
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +2
Query: 168 FYHVCRGFPKRNMLYISEWNSFVKRKKLVAGDSVIFM 204
F H+ RG PKR++L + W+ FV K+LVAGDSV+F+
Sbjct: 1052 FRHIFRGQPKRHLL-TTGWSVFVSAKRLVAGDSVLFI 1159
>TC89117 similar to GP|12484199|gb|AAG53998.1 auxin response transcription
factor 3 {Arabidopsis thaliana}, partial (26%)
Length = 861
Score = 84.7 bits (208), Expect = 7e-17
Identities = 56/161 (34%), Positives = 75/161 (45%), Gaps = 10/161 (6%)
Frame = +1
Query: 13 EIWHTCATAAVKIPKLHSRVYYFPQGHLENASPSSSSITHTHSFLQSFRPFTLCIVSAVD 72
E+WH CA + +PK S V Y PQGH E A S + P C V V
Sbjct: 370 ELWHACAGPLISLPKKGSIVVYVPQGHFEQAHDFPVSACN-------IPPHVFCRVLDVK 528
Query: 73 LLADPHTDEVFVKLLLTPITNDVHLENPKEEV----ANLNDRNEVVS------FVKTLTR 122
L A+ +DEV+ ++LL P + +N +E V A D +V F KTLT
Sbjct: 529 LHAEEGSDEVYCQVLLVPENQQLE-QNVREGVIDADAEEEDTEAIVKSTTPHMFCKTLTA 705
Query: 123 SDVNNARSFHIPRFCADNVFPQLDLEAESSSQHLFVTDVHG 163
SD + F +PR A++ FP LD + SQ L D+HG
Sbjct: 706 SDTSTHGGFSVPRXAAEDCFPPLDYGQQRPSQELVXKDLHG 828
>TC82150 similar to GP|19352051|dbj|BAB85919. auxin response factor 10
{Oryza sativa}, partial (30%)
Length = 1263
Score = 75.1 bits (183), Expect = 5e-14
Identities = 56/135 (41%), Positives = 77/135 (56%), Gaps = 12/135 (8%)
Frame = +2
Query: 235 KAVMEALKLAEENKAFEIVYYPQGDDWCDFVVDGNVVDESMKIQWNPRMRVKM--KTDKS 292
++V+EA+ A ++FE VYYP+ +F V + V +M+IQW MR KM +T+ S
Sbjct: 353 ESVVEAVNGAVNGRSFEGVYYPRAST-PEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDS 529
Query: 293 SRIP-YQGTISIVSRTSNL------WRMLQVNWDEFQVSQIPRRVNPWWVELISHKP--A 343
SRI + GTIS V + WR+LQV WDE + Q + VNPW VEL+S+ P
Sbjct: 530 SRISWFMGTISSVHVQDPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFN 709
Query: 344 PTPF-PQTKKFRTTQ 357
+PF P KK R Q
Sbjct: 710 LSPFTPPRKKPRFIQ 754
Score = 66.6 bits (161), Expect = 2e-11
Identities = 30/64 (46%), Positives = 45/64 (69%)
Frame = +1
Query: 154 QHLFVTDVHGEVSKFYHVCRGFPKRNMLYISEWNSFVKRKKLVAGDSVIFMKDSTGKIFV 213
Q + D+HG+ KF H+ RG P+R++L + W++FV KKLVAGDS++F++ G + V
Sbjct: 1 QTIIAKDMHGQCWKFKHIYRGTPRRHLL-TTGWSNFVNHKKLVAGDSIVFLRAENGDLCV 177
Query: 214 GIRR 217
GIRR
Sbjct: 178 GIRR 189
>BE325390 weakly similar to GP|13272405|gb| unknown protein {Arabidopsis
thaliana}, partial (12%)
Length = 388
Score = 71.2 bits (173), Expect = 8e-13
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +3
Query: 13 EIWHTCATAAVKIPKLHSRVYYFPQGHLENASPSSSSITHTHSFLQSFR--PFTLCIVSA 70
++WH CA A V++P L+++V+YFPQGH E+A H R P C +SA
Sbjct: 120 QLWHACAGAMVQMPPLNTKVFYFPQGHAEHA--------HNKVDFSKTRVPPLIPCRISA 275
Query: 71 VDLLADPHTDEVFVKLLLTPI 91
+ +ADP TDEV+VK+ LTP+
Sbjct: 276 MKYMADPETDEVYVKMKLTPL 338
>TC93578 similar to GP|9757747|dbj|BAB08228.1 auxin response factor 4
{Arabidopsis thaliana}, partial (18%)
Length = 634
Score = 55.8 bits (133), Expect(2) = 4e-12
Identities = 34/98 (34%), Positives = 45/98 (45%)
Frame = +1
Query: 13 EIWHTCATAAVKIPKLHSRVYYFPQGHLENASPSSSSITHTHSFLQSFRPFTLCIVSAVD 72
E+WH CA +PK + V YFPQGHLE + S S +P C V V
Sbjct: 184 ELWHACAGPLTSLPKKGNVVVYFPQGHLEQFA-SFSPFKQLEIPNYDLQPQIFCRVVNVQ 360
Query: 73 LLADPHTDEVFVKLLLTPITNDVHLENPKEEVANLNDR 110
LLA+ DEV+ ++ L P + +EV L R
Sbjct: 361 LLANKENDEVYTQVTLLPQAELAGMHMEGKEVEELRRR 474
Score = 33.1 bits (74), Expect(2) = 4e-12
Identities = 15/35 (42%), Positives = 21/35 (59%)
Frame = +2
Query: 116 FVKTLTRSDVNNARSFHIPRFCADNVFPQLDLEAE 150
F KTLT SD + F +PR A++ FP LD + +
Sbjct: 521 FCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQ 625
>BQ124121 similar to PIR|G86331|G863 IAA24 [imported] - Arabidopsis thaliana,
partial (2%)
Length = 569
Score = 58.9 bits (141), Expect = 4e-09
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Frame = +2
Query: 138 ADNVFPQLDLEAESSSQHLFVTDVHGEVSKFYHVCRGFPKRNMLYISEWNSFVKRKKLVA 197
AD FP LD+ + Q L V D+ G F H+ + ++L + WN+FV K L
Sbjct: 5 ADRCFP*LDMTLQPPMQDLVVKDLQGIEWNFRHIYCDHERAHLL-TNGWNTFVNSKNLRP 181
Query: 198 GDSVIFMKDSTGKIFVGIRR----NTQFVAAAAEQKKDELEKAVMEALKLAEE-NKAFEI 252
GDS IF+ G+I +GIRR ++ +Q ++ + A+ A F +
Sbjct: 182 GDSCIFVSGENGEIGIGIRRAMKQHSHICTKLCQQSSQNIQLGALAAVVHAVSIGSLFHL 361
Query: 253 VYYPQGDDWC---DFVVDGNVVDESMKIQWNPRMRVKMKTDKSSRIPYQGTI 301
Y+P W +F++ ES++ ++ RV M ++ GTI
Sbjct: 362 QYHP----WIAPFEFMIPLKTYVESIEKDYSIGTRVHMLSEVGGCPRRYGTI 505
>TC83162 homologue to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (18%)
Length = 569
Score = 51.2 bits (121), Expect = 8e-07
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 10/151 (6%)
Frame = +2
Query: 165 VSKFYHVCRGFPKRNMLYISEWNSFVKRKKLVAGDSVIFMKDSTGKIFVGIRR--NTQFV 222
+S + + G + + L + W+ FV K+LVAGDSV+F+ + ++ +GIRR Q V
Sbjct: 14 LSGSFDIFFGDSQNDTLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTV 193
Query: 223 AAAAEQKKDELEKAVM-EALKLAEENKAFEIVYYPQGDDWCDFVVDGNVVDESMKIQWNP 281
++ D + ++ A A N F + + P+ +FV+ + + +K ++
Sbjct: 194 MPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASP-SEFVIP---LSKYIKAVYHT 361
Query: 282 -------RMRVKMKTDKSSRIPYQGTISIVS 305
R R+ +T++SS Y GTI+ +S
Sbjct: 362 RPFLSVCRFRMLFETEESSVRRYMGTITSIS 454
>AW695486 homologue to GP|22136676|gb| auxin response factor 1 {Arabidopsis
thaliana}, partial (9%)
Length = 480
Score = 46.2 bits (108), Expect = 3e-05
Identities = 18/34 (52%), Positives = 22/34 (63%)
Frame = +2
Query: 13 EIWHTCATAAVKIPKLHSRVYYFPQGHLENASPS 46
E+WH CA V +P+ RVYYFPQGH+E S
Sbjct: 308 ELWHACAGPLVTLPREGERVYYFPQGHMEQLEAS 409
>BG644686 similar to GP|22136676|gb| auxin response factor 1 {Arabidopsis
thaliana}, partial (6%)
Length = 731
Score = 44.3 bits (103), Expect = 1e-04
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +3
Query: 13 EIWHTCATAAVKIPKLHSRVYYFPQGHLE 41
E+W CA V +PK RVYYFPQGH+E
Sbjct: 207 ELWRLCAGPLVDVPKNEERVYYFPQGHME 293
>TC78765 weakly similar to PIR|T47975|T47975 auxin response factor-like
protein - Arabidopsis thaliana, partial (30%)
Length = 1586
Score = 41.2 bits (95), Expect = 8e-04
Identities = 40/168 (23%), Positives = 71/168 (41%), Gaps = 9/168 (5%)
Frame = +3
Query: 264 FVVDGNVVDESMKIQWNPRMRVKM--------KTDKSSRIPYQGTISIVSRTSNL-WRML 314
F++ N E++ +++ MR KM +TDK G I S N WR L
Sbjct: 21 FIISVNKYMEAINQKFSVGMRFKMSFDGDDSPETDKRFSGTIIGQEDISSHWLNSKWRSL 200
Query: 315 QVNWDEFQVSQIPRRVNPWWVELISHKPAPTPFPQTKKFRTTQSSAQLSDKKETLLNGDG 374
+V WD+ P R++PW +E + + P K++ + +++ D +T + GD
Sbjct: 201 KVQWDDPASIPRPDRISPWEIEPLMASVPTSIQPAVAKYKRPRLPSEVPDFGDTTV-GDS 377
Query: 375 FPVDIQRVRHDLVSISGPIHSHIILNSSETKFPATHNCNTKNDSDGSI 422
+ + D+ ++ + +I S F H+ T N S I
Sbjct: 378 TYWEAGLAQSDITQVNNVLSENI--RSDGMHF--WHHKQTDNSSSNGI 509
>BG646172 homologue to PIR|F86427|F86 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (14%)
Length = 802
Score = 40.4 bits (93), Expect = 0.001
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Frame = +1
Query: 288 KTDKSSRIPYQGTISIVSRTSNL------WRMLQVNWDEFQVSQIPRRVNPWWVELISHK 341
+T++SS Y GTI+ +S ++ WR ++V WDE + RV+ W +E ++
Sbjct: 1 ETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTF 180
Query: 342 PA-PTPFP 348
P P+PFP
Sbjct: 181 PMYPSPFP 204
>TC80369 similar to PIR|A86386|A86386 probable DNA-binding protein RAV2
[imported] - Arabidopsis thaliana, partial (30%)
Length = 821
Score = 38.9 bits (89), Expect = 0.004
Identities = 33/101 (32%), Positives = 45/101 (43%), Gaps = 7/101 (6%)
Frame = +3
Query: 116 FVKTLTRSDVNNARSFHIPRFCADNVFP-------QLDLEAESSSQHLFVTDVHGEVSKF 168
F K +T SDV IP+ A+ FP Q A L D+ G+V +F
Sbjct: 18 FEKVVTPSDVGKLNRLVIPKQHAEKHFPLQKADCVQGSASAAGKGVLLNFEDIGGKVWRF 197
Query: 169 YHVCRGFPKRNMLYISEWNSFVKRKKLVAGDSVIFMKDSTG 209
+ + +L W+ FVK K L AGD+V F + STG
Sbjct: 198 RYSYWNSSQSYVL-TKGWSRFVKEKNLKAGDTVCFQR-STG 314
>TC85891 similar to PIR|A86386|A86386 probable DNA-binding protein RAV2
[imported] - Arabidopsis thaliana, partial (57%)
Length = 2083
Score = 36.2 bits (82), Expect = 0.027
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Frame = +2
Query: 116 FVKTLTRSDVNNARSFHIPRFCADNVFPQLDLE----------AESSSQHLFVT--DVHG 163
F KT+T SDV IP+ A+ FP + A ++++ L + DV G
Sbjct: 1163 FEKTVTPSDVGKLNRLVIPKQHAEKHFPLNAVAVAVACDGVSTAAAAAKGLLLNFEDVGG 1342
Query: 164 EVSKFYHVCRGFPKRNMLYISEWNSFVKRKKLVAGDSVIFMKDSTG 209
+V +F + + +L W+ FVK K L AGD+V F + STG
Sbjct: 1343 KVWRFRYSYWNSSQSYVL-TKGWSRFVKEKNLRAGDAVRFFR-STG 1474
>TC88323 similar to PIR|T08917|T08917 auxin response factor 9 - Arabidopsis
thaliana, partial (21%)
Length = 1232
Score = 33.1 bits (74), Expect = 0.23
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 311 WRMLQVNWDEFQVSQIPRRVNPWWVE 336
WR L+V WDE P RV+PW +E
Sbjct: 82 WRSLKVQWDEPSAITRPDRVSPWEIE 159
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,182,922
Number of Sequences: 36976
Number of extensions: 229412
Number of successful extensions: 1356
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of query: 456
length of database: 9,014,727
effective HSP length: 99
effective length of query: 357
effective length of database: 5,354,103
effective search space: 1911414771
effective search space used: 1911414771
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC134322.24