TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134322.2 + phase: 0 /pseudo
         (840 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG587127 weakly similar to PIR|H84506|H84 probable retroelement ...    72  1e-12
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ...    67  3e-11
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis...    42  0.001

>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (13%)
          Length = 415

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 39/112 (34%), Positives = 60/112 (52%)
 Frame = +3

Query: 685 GVTLEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQV 744
           G+ L  P   +++QS R +F +SNN+  YEAL AG+RLA  + ++ + A  DSQLV  Q 
Sbjct: 3   GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182

Query: 745 TGNFQTKDPQLLMYLESVMYLTQKFVSFKYYMCLESRTVEQTCWLSWLAPSD 796
           +G ++ +D  +  YL+ V  L QK   F       S  V+     +  + SD
Sbjct: 183 SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALASSSD 338


>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (2%)
          Length = 592

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 36/109 (33%), Positives = 54/109 (49%)
 Frame = -2

Query: 667 AKWVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALKV 726
           +KW L  DG+ N  G G G  +  P G  I  + R  F+ +NN AEYEA   G+  A+ +
Sbjct: 540 SKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNNMAEYEACIFGIEEAIDM 361

Query: 727 VVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMYLTQKFVSFKYY 775
            +K L+   DS LV  Q+ G ++T    L+ Y +    L   F   + +
Sbjct: 360 RIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELH 214


>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
           chromosome II BAC F26H6; putative retroelement pol
           polyprotein, partial (1%)
          Length = 636

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = -2

Query: 669 WVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGM 720
           W L  DG+ N+ G+G G  L  P G  I  + R  F  +NN AEYEA   G+
Sbjct: 290 WGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.358    0.156    0.572 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,587,149
Number of Sequences: 36976
Number of extensions: 368965
Number of successful extensions: 3485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 2452
Number of HSP's gapped (non-prelim): 1178
length of query: 840
length of database: 9,014,727
effective HSP length: 104
effective length of query: 736
effective length of database: 5,169,223
effective search space: 3804548128
effective search space used: 3804548128
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 63 (28.9 bits)