BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133780.9 - phase: 0 /pseudo
(562 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC85262 similar to GP|9279671|dbj|BAB01228.1 transport inhibitor... 495 0.0
TC85267 similar to GP|9279671|dbj|BAB01228.1 transport inhibitor... 582 e-166
TC86245 weakly similar to GP|9279671|dbj|BAB01228.1 transport in... 341 5e-94
TC86244 weakly similar to PIR|T48087|T48087 transport inhibitor ... 339 2e-93
TC88184 similar to GP|11935209|gb|AAG42020.1 putative transport ... 241 4e-64
AW586059 similar to GP|13249030|gb F-box containing protein TIR1... 161 5e-40
TC80432 similar to PIR|T52139|T52139 LRR-containing F-box protei... 115 6e-26
BQ137720 similar to GP|12658970|gb| GRR1-like protein 1 {Arabido... 112 4e-25
AL374485 similar to GP|12658970|gb| GRR1-like protein 1 {Arabido... 79 4e-21
TC88183 similar to PIR|T48087|T48087 transport inhibitor respons... 90 2e-18
TC81462 similar to GP|21536497|gb|AAM60829.1 F-box protein famil... 69 5e-12
TC84158 similar to PIR|T52139|T52139 LRR-containing F-box protei... 46 7e-10
TC76362 similar to GP|10716949|gb|AAG21977.1 SKP1 interacting pa... 55 5e-08
AW697041 49 5e-06
TC80264 similar to GP|21689699|gb|AAM67471.1 putative F-box fami... 49 7e-06
TC81565 similar to GP|6041850|gb|AAF02159.1| unknown protein {Ar... 47 3e-05
BG646666 similar to PIR|T48087|T48 transport inhibitor response ... 45 1e-04
TC88495 similar to GP|15420162|gb|AAK97303.1 F-box containing pr... 41 0.001
TC89980 similar to PIR|D96512|D96512 hypothetical protein F2G19.... 41 0.001
BI311086 40 0.002
>TC85262 similar to GP|9279671|dbj|BAB01228.1 transport inhibitor
response-like protein {Arabidopsis thaliana}, partial
(47%)
Length = 1291
Score = 495 bits (1274), Expect(2) = 0.0
Identities = 246/246 (100%), Positives = 246/246 (100%)
Frame = +1
Query: 317 WD*VL*LAHVKNCKN*EFSHQLHLETKQLLPKKDL*RYQWDVLSFTHYSTSVTR*PMLLS 376
WD*VL*LAHVKNCKN*EFSHQLHLETKQLLPKKDL*RYQWDVLSFTHYSTSVTR*PMLLS
Sbjct: 334 WD*VL*LAHVKNCKN*EFSHQLHLETKQLLPKKDL*RYQWDVLSFTHYSTSVTR*PMLLS 513
Query: 377 *QWPKTAQILSDLGYASWMQQNLTLTQCSH*MKVLGRLCSHASD*GGYHSQVS*PTRFSF 436
*QWPKTAQILSDLGYASWMQQNLTLTQCSH*MKVLGRLCSHASD*GGYHSQVS*PTRFSF
Sbjct: 514 *QWPKTAQILSDLGYASWMQQNLTLTQCSH*MKVLGRLCSHASD*GGYHSQVS*PTRFSF 693
Query: 437 TLVCMLSSLKCYLLHLLARVTRECSMY*TDAKRFASLRLETVLSETRRF*QT*GSMKQCD 496
TLVCMLSSLKCYLLHLLARVTRECSMY*TDAKRFASLRLETVLSETRRF*QT*GSMKQCD
Sbjct: 694 TLVCMLSSLKCYLLHLLARVTRECSMY*TDAKRFASLRLETVLSETRRF*QT*GSMKQCD 873
Query: 497 PFGCRRAR*L*KHARHWQRRCRG*MWRFSVKVNRQIVTWKMGRESRRCICIVQWLGKGRM 556
PFGCRRAR*L*KHARHWQRRCRG*MWRFSVKVNRQIVTWKMGRESRRCICIVQWLGKGRM
Sbjct: 874 PFGCRRAR*L*KHARHWQRRCRG*MWRFSVKVNRQIVTWKMGRESRRCICIVQWLGKGRM 1053
Query: 557 HQTMYG 562
HQTMYG
Sbjct: 1054HQTMYG 1071
Score = 206 bits (523), Expect(2) = 0.0
Identities = 103/103 (100%), Positives = 103/103 (100%)
Frame = +3
Query: 214 NRSVPVDALQRILTRAPQLMDLGIGSFFHDLNSDAYAMFKATILKCKSITSLSGFLEVAP 273
NRSVPVDALQRILTRAPQLMDLGIGSFFHDLNSDAYAMFKATILKCKSITSLSGFLEVAP
Sbjct: 3 NRSVPVDALQRILTRAPQLMDLGIGSFFHDLNSDAYAMFKATILKCKSITSLSGFLEVAP 182
Query: 274 FSLAAIYPICQNLTSLNLSYAAGILGIELIKLIRHCGKLQRLW 316
FSLAAIYPICQNLTSLNLSYAAGILGIELIKLIRHCGKLQRLW
Sbjct: 183 FSLAAIYPICQNLTSLNLSYAAGILGIELIKLIRHCGKLQRLW 311
>TC85267 similar to GP|9279671|dbj|BAB01228.1 transport inhibitor
response-like protein {Arabidopsis thaliana}, partial
(48%)
Length = 1795
Score = 582 bits (1501), Expect = e-166
Identities = 291/293 (99%), Positives = 291/293 (99%)
Frame = +1
Query: 1 MNYFPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPERLVERF 60
MNYFPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPERLVERF
Sbjct: 916 MNYFPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPERLVERF 1095
Query: 61 PDLKSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLELL 120
PDLKSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLELL
Sbjct: 1096 PDLKSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLELL 1275
Query: 121 SRSFVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVEDHKGQWLSCFPESCTS 180
SRSFVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVEDHKGQWLSCFPESCTS
Sbjct: 1276 SRSFVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVEDHKGQWLSCFPESCTS 1455
Query: 181 LVSLNFACLKGDINLGALERLVSRSPNLKSLRLNRSVPVDALQRILTRAPQLMDLGIGSF 240
LVSLNFACLKGDINLGALERLVSRSPNLKSLRLNRSVPVDALQRILTRAPQLMDLGIGSF
Sbjct: 1456 LVSLNFACLKGDINLGALERLVSRSPNLKSLRLNRSVPVDALQRILTRAPQLMDLGIGSF 1635
Query: 241 FHDLNSDAYAMFKATILKCKSITSLSGFLEVAPFSLAAIYPICQNLTSLNLSY 293
FHDLNSDAYAMFKATILKCKSITSL GFLEVAPFSLAAIY ICQNLTSLNLSY
Sbjct: 1636 FHDLNSDAYAMFKATILKCKSITSL*GFLEVAPFSLAAIYRICQNLTSLNLSY 1794
>TC86245 weakly similar to GP|9279671|dbj|BAB01228.1 transport inhibitor
response-like protein {Arabidopsis thaliana}, partial
(80%)
Length = 2260
Score = 341 bits (874), Expect = 5e-94
Identities = 169/313 (53%), Positives = 221/313 (69%)
Frame = +3
Query: 4 FPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPERLVERFPDL 63
FPDEV+E V + S DR+S+SLVCK WY ER++R+ VFIGNCY++SPE L RFP++
Sbjct: 516 FPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVFIGNCYAVSPEILTRRFPNI 695
Query: 64 KSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLELLSRS 123
+S+T+KGKP F+DF+LVP WG ++ W+ A LEELRLKRM VSDESLE L+ S
Sbjct: 696 RSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRLKRMAVSDESLEFLAFS 875
Query: 124 FVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVEDHKGQWLSCFPESCTSLVS 183
F NFK+L L+SC+GF+TDGLAAVA NC++L ELD+QEN V+D G WLSCFPES TSL
Sbjct: 876 FPNFKALSLLSCDGFSTDGLAAVATNCKNLTELDIQENGVDDKSGNWLSCFPESFTSLEI 1055
Query: 184 LNFACLKGDINLGALERLVSRSPNLKSLRLNRSVPVDALQRILTRAPQLMDLGIGSFFHD 243
LNFA L D+N ALE+LV+R +LK+L++N+SV ++ LQR+L RAPQL +LG GSF +
Sbjct: 1056LNFANLSNDVNFDALEKLVARCNSLKTLKVNKSVTLEQLQRLLVRAPQLCELGTGSFSQE 1235
Query: 244 LNSDAYAMFKATILKCKSITSLSGFLEVAPFSLAAIYPICQNLTSLNLSYAAGILGIELI 303
L Y+ + C+S+ +LSG + +YP+C NLT LN SYA + L
Sbjct: 1236LTGQQYSELERAFNNCRSLHTLSGLWVASAQYHQVLYPVCTNLTFLNFSYAP-LDSEGLS 1412
Query: 304 KLIRHCGKLQRLW 316
KL+ C L+RLW
Sbjct: 1413KLLVRCPNLRRLW 1451
Score = 38.9 bits (89), Expect = 0.005
Identities = 49/149 (32%), Positives = 64/149 (42%)
Frame = +1
Query: 357 DVLSFTHYSTSVTR*PMLLS*QWPKTAQILSDLGYASWMQQNLTLTQCSH*MKVLGRLCS 416
D S+T T R*PMLL KTA L G AS + + + + L +L
Sbjct: 1600 DAGSYTTSYTFAVR*PMLLLLLLWKTAPTLLIFGSAS*PLVSQITRRVNLWTRPLEQLLR 1779
Query: 417 HASD*GGYHSQVS*PTRFSFTLVCMLSSLKCYLLHLLARVTRECSMY*TDAKRFASLRLE 476
A + G QV * T ML + K + LL V +C++Y + +LR
Sbjct: 1780 PALNSKGLLYQVL*LT*HLSI*GSMLKTWKHFQWLLLEAVIGQCNVYWLAVRSCENLR*G 1959
Query: 477 TVLSETRRF*QT*GSMKQCDPFGCRRAR* 505
TV S RF SM Q FGCR A+*
Sbjct: 1960 TVHSAMPRFCLVLTSMSQ*GHFGCRTAK* 2046
>TC86244 weakly similar to PIR|T48087|T48087 transport inhibitor response
protein TIR1 [imported] - Arabidopsis thaliana, partial
(48%)
Length = 2369
Score = 339 bits (869), Expect = 2e-93
Identities = 174/316 (55%), Positives = 222/316 (70%), Gaps = 5/316 (1%)
Frame = +1
Query: 6 DEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPERLVERFPDLKS 65
DEV++ V V S DRNS SLVCK WY ER +R+ VFIGNCYS++PE L RFP+++S
Sbjct: 250 DEVLKQVLGTVKSRKDRNSASLVCKQWYNAERLSRRNVFIGNCYSVTPEILTRRFPNIRS 429
Query: 66 LTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLELLSRSFV 125
+TLKGKP F+DF+LVP WG ++ W+ A+ LEELRLKRMVV+DESLE L+ SF
Sbjct: 430 ITLKGKPRFSDFNLVPENWGADIHSWLVVFAEKYPFLEELRLKRMVVTDESLEFLAFSFH 609
Query: 126 NFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVEDHKGQWLSCFPESCTSLVSLN 185
NFK+L L+SCEGF+TDGLAAVAANC++L ELD+QEN+++D G WLSCFPES TSL LN
Sbjct: 610 NFKALSLLSCEGFSTDGLAAVAANCKNLTELDIQENDIDDKSGDWLSCFPESFTSLEVLN 789
Query: 186 FACLKGDINLGALERLVSRSPNLKSLRLNRSVPVDALQRILTRAPQLMDLGIGSFFHDLN 245
FA L D+N+ ALE+LV R +LK+L++N+SV ++ QR+L APQL +LG GSF DL
Sbjct: 790 FANLNNDVNIDALEKLVGRCKSLKTLKVNKSVTLEQFQRLLVLAPQLCELGSGSFSQDLT 969
Query: 246 SDAYAMFKATILKCKSITSLSGFLEVAPFS-----LAAIYPICQNLTSLNLSYAAGILGI 300
Y ++ CKS+ +LSG L VA S L +Y C NLT LN SYA +
Sbjct: 970 CQQYLELESAFKNCKSLHTLSG-LWVASASAQYIQLQVLYSACTNLTFLNFSYAL-VDSE 1143
Query: 301 ELIKLIRHCGKLQRLW 316
+L L+ HC L+RLW
Sbjct: 1144DLTDLLVHCPNLRRLW 1191
>TC88184 similar to GP|11935209|gb|AAG42020.1 putative transport inhibitor
response TIR1 AtFBL1 protein {Arabidopsis thaliana},
partial (39%)
Length = 742
Score = 241 bits (616), Expect = 4e-64
Identities = 108/162 (66%), Positives = 142/162 (86%)
Frame = +2
Query: 4 FPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPERLVERFPDL 63
FP+EV+EHVF ++ S DR S+SLVCKSWY IER+ R+RVF+GNCY+I+P +++RFP +
Sbjct: 206 FPEEVLEHVFSFIDSTKDRGSISLVCKSWYEIERWCRRRVFVGNCYAITPAMVIKRFPKV 385
Query: 64 KSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLELLSRS 123
+S+TLKGKPHFADF+LVP GWGG+V PWI+A+A LEE++LKRMV+SD+ L+L+++S
Sbjct: 386 RSITLKGKPHFADFNLVPEGWGGYVCPWIKAMAVAFPCLEEIKLKRMVISDDCLDLIAKS 565
Query: 124 FVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVED 165
F NFK LVL+SCEGFTTDGLA++AANCR+LRELDL+E+EVED
Sbjct: 566 FKNFKVLVLISCEGFTTDGLASIAANCRNLRELDLRESEVED 691
>AW586059 similar to GP|13249030|gb F-box containing protein TIR1 {Populus
tremula x Populus tremuloides}, partial (25%)
Length = 545
Score = 161 bits (408), Expect = 5e-40
Identities = 89/176 (50%), Positives = 117/176 (65%), Gaps = 4/176 (2%)
Frame = +3
Query: 102 LEELRLKRMVVSDESLELLSRSFVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQEN 161
LE+L LKRM V+D+ L +++ SF F+ L+LV CEGF T GLAA+A+ CR LR L+L E+
Sbjct: 12 LEKLHLKRMNVTDDDLGVIADSFAGFRELLLVCCEGFGTPGLAAIASKCRLLRVLELVES 191
Query: 162 EVE---DHKGQWLSCFP-ESCTSLVSLNFACLKGDINLGALERLVSRSPNLKSLRLNRSV 217
++ D + W+SCFP E T L SL F C++ +N ALERLV+RSPNLK LRLNRSV
Sbjct: 192 VIDAENDEEVDWVSCFPIEGQTHLESLAFDCVECPVNFEALERLVARSPNLKKLRLNRSV 371
Query: 218 PVDALQRILTRAPQLMDLGIGSFFHDLNSDAYAMFKATILKCKSITSLSGFLEVAP 273
+ L R++ RAPQL LG GSF + N D + + CKS+ LSGF E+ P
Sbjct: 372 SMVQLHRLMLRAPQLTHLGTGSFCANENVDQEPDYASAFAACKSLVCLSGFKEIWP 539
>TC80432 similar to PIR|T52139|T52139 LRR-containing F-box protein
[imported] - Arabidopsis thaliana, partial (18%)
Length = 621
Score = 115 bits (287), Expect = 6e-26
Identities = 53/118 (44%), Positives = 77/118 (64%)
Frame = +2
Query: 6 DEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPERLVERFPDLKS 65
D V++ V Y+ DR+++S VC+ WY I+ TR+ V I CY+ +P+RL RFP L+S
Sbjct: 236 DVVLDCVMPYIHDPKDRDAVSQVCRRWYEIDSQTRKHVTIALCYTTTPDRLRRRFPHLES 415
Query: 66 LTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLELLSRS 123
L LKGKP A F+L+P WGGFV PW+ + L+ L +RM+V+D+ L +L+RS
Sbjct: 416 LKLKGKPRAAMFNLIPENWGGFVNPWVREIENYFDCLKSLHFRRMIVTDDDLSILARS 589
>BQ137720 similar to GP|12658970|gb| GRR1-like protein 1 {Arabidopsis
thaliana}, partial (5%)
Length = 607
Score = 112 bits (280), Expect = 4e-25
Identities = 49/53 (92%), Positives = 50/53 (93%)
Frame = +1
Query: 510 ARHWQRRCRG*MWRFSVKVNRQIVTWKMGRESRRCICIVQWLGKGRMHQTMYG 562
ARHWQRRCRG*MWRFSVKVNR IVTWKMGR SR+CICIVQWLGKGRMH TMYG
Sbjct: 250 ARHWQRRCRG*MWRFSVKVNRXIVTWKMGRXSRKCICIVQWLGKGRMHXTMYG 408
>AL374485 similar to GP|12658970|gb| GRR1-like protein 1 {Arabidopsis
thaliana}, partial (2%)
Length = 475
Score = 78.6 bits (192), Expect(2) = 4e-21
Identities = 36/38 (94%), Positives = 37/38 (96%)
Frame = +1
Query: 504 R*L*KHARHWQRRCRG*MWRFSVKVNRQIVTWKMGRES 541
+*L*KHARHWQRRCRG*MWRFSVKVNRQIVTWKMG ES
Sbjct: 85 Q*L*KHARHWQRRCRG*MWRFSVKVNRQIVTWKMGTES 198
Score = 41.2 bits (95), Expect(2) = 4e-21
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 543 RCICIVQWLGKGRMHQ 558
RCICIVQWLGKGRMHQ
Sbjct: 210 RCICIVQWLGKGRMHQ 257
>TC88183 similar to PIR|T48087|T48087 transport inhibitor response protein
TIR1 [imported] - Arabidopsis thaliana, partial (40%)
Length = 731
Score = 90.1 bits (222), Expect = 2e-18
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = +2
Query: 160 ENEVEDHKGQWLSCFPESCTSLVSLNFACLKGDINLGALERLVSRSPNLKSLRLNRSVPV 219
E+EVED G WL+ FP+S TSLVSLN +CL ++N ALERLVSR PN+ +LRLNR+ P+
Sbjct: 2 ESEVEDICGHWLTHFPDSYTSLVSLNISCLANEVNFPALERLVSRCPNMHTLRLNRAAPL 181
Query: 220 DALQRILTRAPQL 232
D L +L APQL
Sbjct: 182 DKLANLLRGAPQL 220
Score = 80.1 bits (196), Expect = 2e-15
Identities = 41/99 (41%), Positives = 57/99 (57%)
Frame = +3
Query: 218 PVDALQRILTRAPQLMDLGIGSFFHDLNSDAYAMFKATILKCKSITSLSGFLEVAPFSLA 277
P+ +LQ L++LG G++ ++ + + A CK + LSGF +V P L
Sbjct: 177 PLISLQTFSVGLHSLVELGTGAYTSEMRPEVFTNLAAAFSGCKQMKGLSGFWDVLPSYLP 356
Query: 278 AIYPICQNLTSLNLSYAAGILGIELIKLIRHCGKLQRLW 316
A+YP+C LTSLNLSYA I +LIKL+ C LQRLW
Sbjct: 357 AVYPVCSRLTSLNLSYAT-IQSPDLIKLVGQCQSLQRLW 470
Score = 28.1 bits (61), Expect = 9.4
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Frame = +3
Query: 142 GLAAVAANCRSLREL--------DLQENEVEDHKGQWLSCFPESCTSLVSLNFACLKGDI 193
GL +AA+C+ LREL L+ N +G L E C L S+ + C + +
Sbjct: 495 GLDMLAASCKDLRELRVFPSDPFGLEANVALTEQG--LVSVSEGCPKLHSVLYFCRQ--M 662
Query: 194 NLGALERLVSRSPNLKSLRL 213
AL + PN+ R+
Sbjct: 663 TNAALNTIARNRPNMTRFRI 722
>TC81462 similar to GP|21536497|gb|AAM60829.1 F-box protein family AtFBL4
{Arabidopsis thaliana}, partial (67%)
Length = 1452
Score = 68.9 bits (167), Expect = 5e-12
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 12/204 (5%)
Frame = +2
Query: 5 PDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYS--ISPERLVERFPD 62
PDE+I +F + S R++ SLVC W R+ER TR + IG S + + L RF +
Sbjct: 116 PDELIVEIFRRLDSKPTRDAASLVCNRWLRLERLTRSSIRIGATGSPDLFVQLLASRFFN 295
Query: 63 LKSLTLKGKPHFADFSLVPHGWG----------GFVYPWIEALAKNKVGLEELRLKRMVV 112
+ ++ + + + +P G ++ + EE + +
Sbjct: 296 ITAVHIDERLSIS----LPVQLGRRRENSSPSSSLKLHYVNKRIGSSSSSEENEFDSLCL 463
Query: 113 SDESLELLSRSFVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVEDHKGQWLS 172
SD L L+ F + L L+ C T+ GL+++A+ C SL+ LDLQ V D Q L+
Sbjct: 464 SDNGLIALADGFPKLEKLKLIWCSNVTSFGLSSLASKCASLKSLDLQGCYVGD---QGLA 634
Query: 173 CFPESCTSLVSLNFACLKGDINLG 196
+ C L LN +G + G
Sbjct: 635 AVGQRCKQLEDLNLRFCEGLTDTG 706
Score = 44.7 bits (104), Expect = 1e-04
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 6/196 (3%)
Frame = +3
Query: 126 NFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVEDHKGQWLSCFPESCTSLVSLN 185
+ KSL + +C T + AVA++C SL L L V + Q + + C L SL
Sbjct: 738 SLKSLGVAACAKITDISMEAVASHCGSLETLSLDSEFVHN---QGVLAVAKGCPHLKSLK 908
Query: 186 FACLKGDINLGALERLVSRSPNLKSLRLNRSVPVDALQRILTRAPQLMDLGIGSFFHDLN 245
C+ ++ AL+ + +L+ L L + QR + + + G +
Sbjct: 909 LQCI--NLTDDALKAVGVSCLSLELLALY------SFQRFTDKGLRAIGNGCKKLKNLTL 1064
Query: 246 SDAYAM----FKATILKCKSITSL--SGFLEVAPFSLAAIYPICQNLTSLNLSYAAGILG 299
SD Y + +A CK +T L +G + L ++ C +L+ L L Y I
Sbjct: 1065SDCYFLSDKGLEAIATGCKELTHLEVNGCHNIGTLGLDSVGKSCLHLSELALLYCQRIGD 1244
Query: 300 IELIKLIRHCGKLQRL 315
+ L+++ + C LQ L
Sbjct: 1245LGLLQVGKGCQFLQAL 1292
Score = 29.3 bits (64), Expect = 4.2
Identities = 35/148 (23%), Positives = 60/148 (39%), Gaps = 14/148 (9%)
Frame = +3
Query: 25 LSLVCKSWYRIERFTRQRV-FIGN------------CYSISPERLVERFPDLKSLTLKGK 71
LSL + Y +RFT + + IGN CY +S + L K LT
Sbjct: 963 LSLELLALYSFQRFTDKGLRAIGNGCKKLKNLTLSDCYFLSDKGLEAIATGCKELT---- 1130
Query: 72 PHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMV-VSDESLELLSRSFVNFKSL 130
L +G ++++ K+ + L EL L + D L + + ++L
Sbjct: 1131 ------HLEVNGCHNIGTLGLDSVGKSCLHLSELALLYCQRIGDLGLLQVGKGCQFLQAL 1292
Query: 131 VLVSCEGFTTDGLAAVAANCRSLRELDL 158
LV C + + +A CR+L++L +
Sbjct: 1293 HLVDCSSIGDEAMCGIATGCRNLKKLHI 1376
>TC84158 similar to PIR|T52139|T52139 LRR-containing F-box protein
[imported] - Arabidopsis thaliana, partial (11%)
Length = 614
Score = 45.8 bits (107), Expect(2) = 7e-10
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 2 NYFPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPER 55
N D V++ V Y+ DR+++S VC+ W+ ++ TR+ V I CY+ +P R
Sbjct: 363 NRIIDVVLDCVIPYITDPKDRDAVSQVCRRWHELDSMTRKHVTIALCYTTTPWR 524
Score = 35.8 bits (81), Expect(2) = 7e-10
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +2
Query: 60 FPDLKSLTLKGKPHFADFSLVPHGW 84
FP L+SL LKGKP A F+L+P W
Sbjct: 539 FPHLESLKLKGKPRAAMFNLIPEDW 613
>TC76362 similar to GP|10716949|gb|AAG21977.1 SKP1 interacting partner 2
{Arabidopsis thaliana}, partial (57%)
Length = 1307
Score = 55.5 bits (132), Expect = 5e-08
Identities = 89/338 (26%), Positives = 134/338 (39%), Gaps = 27/338 (7%)
Frame = +1
Query: 5 PDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFI---GNCYSISPERLVERFP 61
PDE + + ++ + DR S S+VCK W+R+E +RQR+ + I P L R+
Sbjct: 250 PDECLAGILHFLDA-GDRKSCSVVCKRWFRVEGESRQRLSLNAEAKLVDIVPS-LFNRYD 423
Query: 62 DLKSLTL---KGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLE 118
+ L L K D +L+ I KN L +LR R V L
Sbjct: 424 SVTKLALRCNKKSTSINDDALI----------LISLRCKNLTRL-KLRACREVTEIGMLG 570
Query: 119 LLSRSFVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQE-------NEVEDHKGQWL 171
L+R+ N K L +VSC F G+ AV N L EL ++ NEV + +G
Sbjct: 571 -LARNCKNLKKLSVVSCL-FGVKGIRAVVDNSNVLEELSVKRLRGVNDVNEVNE-EGVES 741
Query: 172 SCFPESCTSLVSLNFACLKGDINLGALERLVSRSPNLKSLRLNRSV------------PV 219
C S SL CLK +N + L+ S L++L+L R +
Sbjct: 742 GCGNGSS----SLKSICLKELVNGHSFAPLIIGSRKLQTLKLIRCIGDWDSMLGTVGKMN 909
Query: 220 DALQRILTRAPQLMDLGIGSFFHDLNSDAYAMFKATILKCKSITSLSGFLEVAPFSLAAI 279
L I Q+ D+G+ L + + K E + L I
Sbjct: 910 SGLVEIHLEKVQVSDVGLVGISKCLKLETLHLVKTP--------------ECSDHGLVVI 1047
Query: 280 YPICQNLTSLNL-SYAAGILGIE-LIKLIRHCGKLQRL 315
C+ L L++ + +G E L+ + R+C LQ L
Sbjct: 1048AERCRMLKKLHIDGWRTNRIGDEGLVSVARNCPNLQEL 1161
>AW697041
Length = 504
Score = 48.9 bits (115), Expect = 5e-06
Identities = 22/46 (47%), Positives = 31/46 (66%)
Frame = +1
Query: 65 SLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRM 110
S+TLK K HFADF+L P GW G+V PWI+ + LEE++ ++
Sbjct: 205 SITLKVKLHFADFNLEPEGWSGYVCPWIKDMVVAF*CLEEIQSSKL 342
>TC80264 similar to GP|21689699|gb|AAM67471.1 putative F-box family protein
AtFBL3 {Arabidopsis thaliana}, partial (4%)
Length = 1305
Score = 48.5 bits (114), Expect = 7e-06
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Frame = +3
Query: 112 VSDESLELLSRSFVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQE-NEVEDHKGQW 170
V+D ++ ++ S N L L SC+ T GL + ++C L ELDL + + V D ++
Sbjct: 609 VTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKY 788
Query: 171 LSCFPESCTSLVSLNFACLKGDINLGALERLVSRSPNLKSLRLNRSVPV--DALQRILTR 228
LS C+ LV L ++G L + P L L L R V + D L + T
Sbjct: 789 LS----RCSKLVRLKLGLCTNISDIG-LAHIACNCPKLTELDLYRCVRIGDDGLAALTTG 953
Query: 229 APQLMDLGIGSFFHDLNSDAYAMFKATILKC------KSITSLSGFLEVAPFSLAAIYPI 282
+L L + + + +DA LKC S L G + + A+
Sbjct: 954 CNKLAMLNLA--YCNRITDAG-------LKCISNLGELSDFELRGLSNITSIGIKAVAVS 1106
Query: 283 CQNLTSLNLSY 293
C+ L +LNL +
Sbjct: 1107CKRLANLNLKH 1139
Score = 31.2 bits (69), Expect = 1.1
Identities = 54/231 (23%), Positives = 86/231 (36%), Gaps = 26/231 (11%)
Frame = +3
Query: 111 VVSDESLELLSRSFVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELD------------- 157
+V D L+ L + K++ + C + GL +V + L +++
Sbjct: 222 LVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHCLSELSAPLT 401
Query: 158 -----LQENEVEDHKGQWLSCF-----PESCTSLVSLNFACLKGDINLGALERLVSRSPN 207
L+ V G +S F +C SLV L + G N+G ++ V N
Sbjct: 402 NGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQ--VVGCCN 575
Query: 208 LKSLRLN--RSVPVDALQRILTRAPQLMDLGIGSFFHDLNSDAYAMFKATI-LKCKSITS 264
L +L L R V A+ I P L L + S Y + + + L+ +T
Sbjct: 576 LTTLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTD 755
Query: 265 LSGFLEVAPFSLAAIYPICQNLTSLNLSYAAGILGIELIKLIRHCGKLQRL 315
SG ++A L+ C L L L I I L + +C KL L
Sbjct: 756 CSGVNDIALKYLSR----CSKLVRLKLGLCTNISDIGLAHIACNCPKLTEL 896
>TC81565 similar to GP|6041850|gb|AAF02159.1| unknown protein {Arabidopsis
thaliana}, partial (12%)
Length = 1070
Score = 46.6 bits (109), Expect = 3e-05
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 31/166 (18%)
Frame = +3
Query: 1 MNYFPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIG-------------- 46
+ + PD+ + +F + +DR S L C+ W RI+ F R+ +
Sbjct: 561 ITHLPDDCLTIIFHGLNCRTDRESFGLTCRRWLRIQNFNRRTLQFECSFSILNPSSLSAK 740
Query: 47 --NCYSISPERLVERFPDLKSLTLKGKPHFADFS---LVPHG-----------WGGFVYP 90
+ Y++ RL+ RF L+SL+L G D L+ +G W Y
Sbjct: 741 GLDVYTVHIHRLLRRFQHLESLSLCGCTELDDSXLTRLLSYGSNLQKLNLDCCWKVTNY- 917
Query: 91 WIEALAKNKVGLEELRL-KRMVVSDESLELLSRSFVNFKSLVLVSC 135
W+ A L + L +R++++DE LE + + ++ L C
Sbjct: 918 WLSLTASGCPSLTTIXLYRRLIITDEGLETXTTACLSXXCXXLSYC 1055
>BG646666 similar to PIR|T48087|T48 transport inhibitor response protein TIR1
[imported] - Arabidopsis thaliana, partial (20%)
Length = 764
Score = 44.7 bits (104), Expect = 1e-04
Identities = 26/61 (42%), Positives = 34/61 (55%)
Frame = +1
Query: 472 SLRLETVLSETRRF*QT*GSMKQCDPFGCRRAR*L*KHARHWQRRCRG*MWRFSVKVNRQ 531
S R T T+ F* T S +QCDPFGC A+*+ +H W R C G M + +K + Q
Sbjct: 76 SWRSGTAPLVTKLF*PTLQSWRQCDPFGCPLAQ*VMEHVNCWVRSCLGSMLKSLMKEDLQ 255
Query: 532 I 532
I
Sbjct: 256 I 258
>TC88495 similar to GP|15420162|gb|AAK97303.1 F-box containing protein ORE9
{Arabidopsis thaliana}, partial (12%)
Length = 876
Score = 41.2 bits (95), Expect = 0.001
Identities = 17/40 (42%), Positives = 28/40 (69%)
Frame = +1
Query: 1 MNYFPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTR 40
+++ P+E++ VF + RNSLSLVC S++++ER TR
Sbjct: 190 VSHLPEEILSKVFTGITDTRTRNSLSLVCHSFFKLERKTR 309
>TC89980 similar to PIR|D96512|D96512 hypothetical protein F2G19.16
[imported] - Arabidopsis thaliana, partial (22%)
Length = 980
Score = 41.2 bits (95), Expect = 0.001
Identities = 25/67 (37%), Positives = 35/67 (51%), Gaps = 2/67 (2%)
Frame = +1
Query: 5 PDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISP--ERLVERFPD 62
PDE + VF + + SDRN SLVC+ W +E +RQR+ + + P L RF
Sbjct: 637 PDECLAIVFQSL-NPSDRNQCSLVCRRWLHVEGQSRQRLSLNAKLDLLPVIPSLFNRFDS 813
Query: 63 LKSLTLK 69
+ L LK
Sbjct: 814 VTKLALK 834
>BI311086
Length = 718
Score = 40.0 bits (92), Expect = 0.002
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +1
Query: 102 LEELRLKRMVVSDESLELLSRSFVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDL 158
LE L L V DE+L ++S LVL+ C+ T G+ V NC LRE++L
Sbjct: 319 LEVLNLTNTEVDDEALYIISNRCPALLQLVLLRCDYITDKGVMHVVNNCTQLREINL 489
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.340 0.146 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,138,891
Number of Sequences: 36976
Number of extensions: 312386
Number of successful extensions: 2447
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 1777
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 1929
length of query: 562
length of database: 9,014,727
effective HSP length: 101
effective length of query: 461
effective length of database: 5,280,151
effective search space: 2434149611
effective search space used: 2434149611
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC133780.9