BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130807.9 + phase: 0 /pseudo
(311 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol... 74 9e-21
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 96 2e-20
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 83 1e-16
AL366725 59 3e-09
TC79627 32 0.41
TC88532 similar to PIR|S45033|S45033 probable imbibition protein... 29 2.7
TC81162 weakly similar to PIR|T47673|T47673 hypothetical protein... 29 2.7
TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finge... 28 4.5
TC87639 GP|9663153|emb|CAC01132.1 transport-secretion protein 2.... 28 4.5
TC87954 similar to GP|21928168|gb|AAM78111.1 AT5g23040/MYJ24_3 {... 28 5.9
TC93065 27 7.7
>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 754
Score = 74.3 bits (181), Expect(2) = 9e-21
Identities = 33/50 (66%), Positives = 40/50 (80%)
Frame = -1
Query: 261 KFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDL 310
+F +PS+SP GA + V KKDG R+CIDYRQ NKVT KN+YPLPRID+L
Sbjct: 271 RFQQPSISP*GAALLFVRKKDGYFRMCIDYRQFNKVTTKNKYPLPRIDNL 122
Score = 43.1 bits (100), Expect(2) = 9e-21
Identities = 26/62 (41%), Positives = 36/62 (57%)
Frame = -2
Query: 201 VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKPVSMAPYRMSASELAELKKRLEDLLEN 260
V+ F V PD P +P +RE+ F IDL+ T+ +S P M +EL +LK L+D LE
Sbjct: 450 VLKGFS*VFPDNFPVIPLEREIFFCIDLLLDTQLISNPP*LMDRTELKKLKI*LKDSLEK 271
Query: 261 KF 262
F
Sbjct: 270 GF 265
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 95.9 bits (237), Expect = 2e-20
Identities = 46/100 (46%), Positives = 68/100 (68%)
Frame = +2
Query: 211 DEIPDMPPKREVEFSIDLVPRTKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPW 270
D + +PP+ +++F IDL+P P+ + YR++ +L LK +L+DLLE F++PS+ P
Sbjct: 2 DHLL*VPPEWKIDFGIDLLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP* 181
Query: 271 GAPVFLVMKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDL 310
G V + KKDG +R+ IDY QLN V IK +YPLP ID+L
Sbjct: 182 GVVVLFLKKKDGFLRMSIDYPQLNNVNIKIKYPLPLIDEL 301
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 83.2 bits (204), Expect = 1e-16
Identities = 49/118 (41%), Positives = 70/118 (58%), Gaps = 7/118 (5%)
Frame = +1
Query: 201 VVCDFPEVL-PDEIPDMPPKREV-EFSIDLVP----RTKPVSMAP-YRMSASELAELKKR 253
V+ +FP++ P++ +P R + + +I L+P P+ P Y MS EL LKK
Sbjct: 343 VLEEFPDLFNPEKAYQVPASRGLLDHAIPLIPDKDGNDPPLPWGPLYGMSRQELLVLKKT 522
Query: 254 LEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLM 311
LEDLL+ F++ S S GAPV V K G +R C+DYR LN +T K+RYPLP I + +
Sbjct: 523 LEDLLDKGFIKASGSAAGAPVLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETL 696
>AL366725
Length = 485
Score = 58.5 bits (140), Expect = 3e-09
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +2
Query: 1 RNDIVCFNCNEEGHIGSQCKQPKR 24
RNDIVCFNCNEEGHIGSQCKQPKR
Sbjct: 413 RNDIVCFNCNEEGHIGSQCKQPKR 484
>TC79627
Length = 1522
Score = 31.6 bits (70), Expect = 0.41
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVC-------FSSAEEESGA*FLSTKQLKQM 174
+C GMD++L W+ YN+ ++C C FS+ E+ A L K +
Sbjct: 950 ICRTARGMDLMLV--WIAYNYSLVSCIHAGFCFLLPTVVFSTLEDNPAANLL*HKDSFNL 1123
Query: 175 ERDGILMFSLMASLS 189
+ + MF+L+ + S
Sbjct: 1124 VPEVVRMFNLLVNTS 1168
>TC88532 similar to PIR|S45033|S45033 probable imbibition protein - wild
cabbage, partial (33%)
Length = 1273
Score = 28.9 bits (63), Expect = 2.7
Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 6/52 (11%)
Frame = +1
Query: 73 DCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRC------PLSMFGHDFE 118
DC+ L N ++ + P+KG + SL L+C P+ +FGHD +
Sbjct: 727 DCI------LYAFNAGLLSKLPSKGKLEVSLETLQCEVYTVSPIRVFGHDVQ 864
>TC81162 weakly similar to PIR|T47673|T47673 hypothetical protein T26I12.220
- Arabidopsis thaliana, partial (9%)
Length = 756
Score = 28.9 bits (63), Expect = 2.7
Identities = 10/28 (35%), Positives = 18/28 (63%)
Frame = +2
Query: 1 RNDIVCFNCNEEGHIGSQCKQPKRAPTT 28
R + +C+ C ++GH S+C P+ A +T
Sbjct: 407 RKNRMCYGCRQKGHNLSECPNPQIAAST 490
>TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finger protein
{Oryza sativa (japonica cultivar-group)}, partial (96%)
Length = 1286
Score = 28.1 bits (61), Expect = 4.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 5 VCFNCNEEGHIGSQCKQPKRAPTTGR 30
+C+NC E GH+ S C T G+
Sbjct: 535 LCWNCKEPGHMASSCPNEGICHTCGK 612
Score = 27.3 bits (59), Expect = 7.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 2 NDIVCFNCNEEGHIGSQC 19
N VC NC+ GHI S+C
Sbjct: 469 NVAVCHNCSLPGHIASEC 522
>TC87639 GP|9663153|emb|CAC01132.1 transport-secretion protein 2.2 (TTS-2.2)
{Homo sapiens}, partial (2%)
Length = 1522
Score = 28.1 bits (61), Expect = 4.5
Identities = 11/32 (34%), Positives = 17/32 (52%), Gaps = 6/32 (18%)
Frame = -1
Query: 6 CFNCNEEGHIGSQC------KQPKRAPTTGRV 31
C++C+E GHI C K+ K+ P +V
Sbjct: 316 CYSCHERGHIARNCTNTSAAKKKKKGPKVAKV 221
>TC87954 similar to GP|21928168|gb|AAM78111.1 AT5g23040/MYJ24_3 {Arabidopsis
thaliana}, partial (82%)
Length = 1200
Score = 27.7 bits (60), Expect = 5.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 14 HIGSQCKQPKRAPTTGRV 31
H+GS CKQPKR P +V
Sbjct: 754 HLGSICKQPKRLPPEKQV 701
>TC93065
Length = 783
Score = 27.3 bits (59), Expect = 7.7
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 1 RNDIVCFNCNEEGHIGSQCKQPKRAPTTGRVFAMAGTQTENEDRLIRGTCYI 52
R + C CN+ GH+ CK + + + E+E+ L + +CY+
Sbjct: 620 RPGVKCRACNQLGHVEKVCK--NKTNQQEQEARVVEHHQEDEEPLFKASCYL 769
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.140 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,083,451
Number of Sequences: 36976
Number of extensions: 137618
Number of successful extensions: 959
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of query: 311
length of database: 9,014,727
effective HSP length: 96
effective length of query: 215
effective length of database: 5,465,031
effective search space: 1174981665
effective search space used: 1174981665
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC130807.9