TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130807.10 - phase: 0 /pseudo
         (530 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci...    95  5e-32
AL366725                                                               88  7e-18
TC77232 similar to SP|O04130|SERA_ARATH D-3-phosphoglycerate deh...    30  1.8
TC79281 similar to GP|12597851|gb|AAG60161.1 hypothetical protei...    30  1.8
TC93780 similar to GP|16648903|gb|AAL24303.1 alpha glucosidase-l...    30  3.0
AW585096 similar to GP|11125147|emb MHC class I chain-related pr...    29  5.1
TC87093 homologue to GP|10177817|dbj|BAB11183. gene_id:MKD15.14~...    29  5.1
BG583840 GP|20146556|gb ATP synthase alpha subunit {Clethra barb...    28  6.7

>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
           arietinum}, partial (8%)
          Length = 516

 Score = 95.1 bits (235), Expect(2) = 5e-32
 Identities = 50/78 (64%), Positives = 56/78 (71%)
 Frame = +3

Query: 75  GKFCYLCWKRMELQ*LGRCSGENF*TGTSRKMSEVRKRLNFWS*SRVTCLLLSMLQSLWN 134
           G  C L W RM L * G CSG +F  G  ++MS VRKRLNFWS*+RVTCL  SMLQSLWN
Sbjct: 279 GLVCCLFWSRMMLW*PGPCSGRSFWAGIFQRMSGVRKRLNFWS*NRVTCLSQSMLQSLWN 458

Query: 135 LQSSTLTIQRRQLNSPNV 152
           L  STL   RRQL+SP+V
Sbjct: 459 LPHSTLITVRRQLSSPSV 512



 Score = 61.2 bits (147), Expect(2) = 5e-32
 Identities = 37/68 (54%), Positives = 44/68 (64%)
 Frame = +1

Query: 10  W*WRSEDAGDLFEESSPNIQGKV*SRWCPEVA*GSGEDFQGHAVL*SAKGAVRDAYVG*G 69
           W*  ++DA D  EESS NIQG V S WC EVA G  ++   HA+ *  +GAV DA+V * 
Sbjct: 85  W**WNQDARDFLEESSTNIQG*VCS*WCLEVAEGD*KNIPSHAMF*DTEGAVWDAHVS*R 264

Query: 70  GR*LVGKF 77
           GR*LV  F
Sbjct: 265 GR*LVD*F 288


>AL366725 
          Length = 485

 Score = 88.2 bits (217), Expect = 7e-18
 Identities = 72/160 (45%), Positives = 90/160 (56%)
 Frame = +3

Query: 137 SSTLTIQRRQLNSPNV*SLRIA*ELTSREP*GINRLEFSLIW*VVAGSMRRTQKIIIR** 196
           SS  T+  R L+S N  S R+ *  TSR     N  EFSLI *+ A S RR  +++ R *
Sbjct: 3   SSIRTMLLRLLSSRNASSSRMV*GPTSRGQSDTNSSEFSLI**IPAESTRRILRLMTRL* 182

Query: 197 VSEVVRDSRVVLNRTVPLLTRESKD*MMRGGPIGEMLLLR*FVTSVAIKATRVMFVPKMR 256
           +S   R +RV L+  VPLL R +++  M G     MLL R  V+++A KATRVMFV K  
Sbjct: 183 MSGRPRANRVALSLIVPLLIRANREWSMIGVLRRRMLLRRLSVSTMARKATRVMFVLKRS 362

Query: 257 RSASGVVRRVTH*LIVRGETLFAITTMKRAISVLSAHSRR 296
           R+ SGV RRV  *LI     L A    KR I V +A S R
Sbjct: 363 RNVSGVTRRVIL*LIASEMILCASIATKRVILVPNASSLR 482


>TC77232 similar to SP|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase 
           chloroplast precursor (EC 1.1.1.95) (3-PGDH). [Mouse-ear
           cress], partial (87%)
          Length = 2474

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 20/49 (40%), Positives = 35/49 (70%)
 Frame = +3

Query: 320 EVLVSLIVLL*LLL*ILVLLIVSLLLNVHISWVWFYLI*KEKWLLKLQL 368
           ++L++L+VLL*+LL    LLI+ LLLN+ + ++  +L+   K +L L+L
Sbjct: 603 KLLLNLVVLL*MLL----LLILLLLLNMGLLFLLLWLVTFLKLMLPLKL 737


>TC79281 similar to GP|12597851|gb|AAG60161.1 hypothetical protein
            {Arabidopsis thaliana}, partial (57%)
          Length = 1860

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 1    LFNSNRNWSW*WRSEDAGDLFEESSPNIQG 30
            L +S +NW++*+R ++ G   E  +P+IQG
Sbjct: 995  LTSSTKNWAF*YRKKEVGSSGEGGTPSIQG 1084


>TC93780 similar to GP|16648903|gb|AAL24303.1 alpha glucosidase-like protein
           {Arabidopsis thaliana}, partial (18%)
          Length = 825

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 3   NSNRNWSW*WRSEDAGDLFEESSPNIQ 29
           NS + WSW WR    G L  ++SPNIQ
Sbjct: 225 NSTQRWSWFWRVLKVGML--KNSPNIQ 299


>AW585096 similar to GP|11125147|emb MHC class I chain-related protein A
           {Homo sapiens}, partial (5%)
          Length = 231

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/34 (41%), Positives = 25/34 (73%)
 Frame = +3

Query: 317 DLSEVLVSLIVLL*LLL*ILVLLIVSLLLNVHIS 350
           ++  +L++L++LL LLL  L LLI+ L+L + I+
Sbjct: 111 EIMRLLLNLLLLLLLLLLFLTLLIILLILTIDIT 212


>TC87093 homologue to GP|10177817|dbj|BAB11183. gene_id:MKD15.14~unknown
           protein {Arabidopsis thaliana}, partial (49%)
          Length = 1313

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 24/70 (34%), Positives = 41/70 (58%)
 Frame = -1

Query: 276 TLFAITTMKRAISVLSAHSRRRLEPVEKCLH*PVRRLLMRTDLSEVLVSLIVLL*LLL*I 335
           T+F I+T +  IS+ +    ++++   K + *P R       L  +++ L+V+L LLL  
Sbjct: 818 TIFIISTTR--ISIPTRQ*SQQIQMTRKIIP*PRRGSFTHRALLLLVMLLVVVLLLLL-- 651

Query: 336 LVLLIVSLLL 345
           LVLL++ LLL
Sbjct: 650 LVLLLLLLLL 621


>BG583840 GP|20146556|gb ATP synthase alpha subunit {Clethra barbinervis},
           partial (17%)
          Length = 585

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/36 (44%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
 Frame = +2

Query: 321 VLVSLIVLL*LLL*ILVLLIVSLLLNVHI-SWVWFY 355
           +L+ L++LL LLL +L+LL++ LLL ++I  ++W Y
Sbjct: 2   LLLLLLLLLLLLLLLLLLLLLLLLLLLYIYIYMWLY 109


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.370    0.167    0.608 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,559,029
Number of Sequences: 36976
Number of extensions: 203931
Number of successful extensions: 2952
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 1621
Number of HSP's gapped (non-prelim): 1384
length of query: 530
length of database: 9,014,727
effective HSP length: 101
effective length of query: 429
effective length of database: 5,280,151
effective search space: 2265184779
effective search space used: 2265184779
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 61 (28.1 bits)