Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130806.6 + phase: 0 /pseudo
         (2359 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis...   317  3e-86
CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fra...   165  2e-40
AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia...   140  6e-33
AL366605                                                              135  2e-31
TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC ...   114  3e-25
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ...   103  6e-22
BE124481                                                               94  6e-19
BE942785                                                               94  8e-19
AL375831                                                               70  1e-16
AL367832 weakly similar to GP|14091845|gb Putative retroelement ...    67  8e-11
TC84839 similar to GP|19386827|dbj|BAB86205. hypothetical protei...    51  5e-06
TC87407 similar to PIR|T49945|T49945 periaxin-like protein - Ara...    50  1e-05
TC92466 similar to GP|11141605|gb|AAG32022.1 LEUNIG {Arabidopsis...    47  9e-05
TC79570 similar to PIR|F86427|F86427 auxin response factor 6 (AR...    45  4e-04
TC80046 similar to SP|P22699|GUN6_DICDI Endoglucanase precursor ...    43  0.001
CA859989 similar to GP|18308125|gb bromodomain-containing protei...    43  0.001
TC79058 homologue to GP|20197423|gb|AAM15069.1 unknown protein {...    43  0.002
CA860196 weakly similar to GP|1654183|gb|A MYOD-like DNA-binding...    43  0.002
TC89480 similar to GP|20260684|gb|AAM13240.1 unknown protein {Ar...    43  0.002
BF521580 homologue to GP|20197423|gb|A unknown protein {Arabidop...    42  0.002

>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
            chromosome II BAC F26H6; putative retroelement pol
            polyprotein, partial (1%)
          Length = 636

 Score =  317 bits (812), Expect = 3e-86
 Identities = 163/167 (97%), Positives = 164/167 (97%)
 Frame = -1

Query: 1671 EDMLCSSLGCQTPPSLYD*SHYLAGI*NGSNQVHI*EARFDRKDCTVADATI*I*YRVPF 1730
            EDMLCSSLGCQ PPSLYD*SHYLAGI*NGSNQVHI*EARFDRKDCTVADATI I*YRVPF
Sbjct: 636  EDMLCSSLGCQAPPSLYD*SHYLAGI*NGSNQVHI*EARFDRKDCTVADATIGI*YRVPF 457

Query: 1731 PEGN*RQYSC*SLGSPTT*RLSTYQV*LS**RDYVSKDERL*RATIRRRS*SRFSVGFDI 1790
            PEGN*RQYSC*SLGSPTT*RLSTYQV*LS**RDYVSKDERL*RATIRRRS*SRFSVGFDI
Sbjct: 456  PEGN*RQYSC*SLGSPTT*RLSTYQV*LS**RDYVSKDERL*RATIRRRS*SRFSVGFDI 277

Query: 1791 *WGCQCIRQRHRGSTPYS*RCSHPFHSKTPV*LHEQHR*I*SLHHGY 1837
            *WGCQCIRQRHRGSTPYS*RCSHPFHSKTPV*LHEQHR*I SLHHG+
Sbjct: 276  *WGCQCIRQRHRGSTPYS*RCSHPFHSKTPV*LHEQHR*IRSLHHGH 136



 Score = 50.8 bits (120), Expect(2) = 2e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +1

Query: 1636 GLCARTTR*NRKKRARHLLFKQEV 1659
            GLCARTTR*NRKKRARHLLFKQEV
Sbjct: 34   GLCARTTR*NRKKRARHLLFKQEV 105



 Score = 20.8 bits (42), Expect(2) = 2e-06
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 1625 DHVPNGVRKFHG 1636
            DHVPN VR  HG
Sbjct: 3    DHVPNSVR-IHG 35


>CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fragment),
           partial (9%)
          Length = 624

 Score =  165 bits (418), Expect = 2e-40
 Identities = 88/182 (48%), Positives = 115/182 (62%)
 Frame = -2

Query: 464 PQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPEKLPSWY 523
           P +N     +QQR  Q   P  P+  IP+ YAE LP LL +     R   P P+ LP  +
Sbjct: 539 PPRNNHPPVHQQRQ*QQARPTFPL--IPMLYAE*LPTLLLRGHCTIRQGKPPPDPLPPRF 366

Query: 524 RLDQTCDFHEGGRGHNIETCYAFKSIVQRLINDGKITFTDSAPNVQTNPLPNHGAATVNM 583
           R D  CDFH+G  GH++E CYA K IV++LIN GK+TF ++ P+V  NPLPNH  A VNM
Sbjct: 365 RSDLKCDFHQGALGHDVEGCYALKHIVKKLINQGKLTFENNVPHVLDNPLPNH--AAVNM 192

Query: 584 IEDCQKTRPILNVQHIRTPLVPLHAKLCKVDLFEHDHDLCEICLMNSGGCQKVRNDIQGL 643
           IE  ++  P L+V+++ TPLVPLH KLC+  LF+HDH  C+    N  GC  V+NDIQ L
Sbjct: 191 IEVYEEA-PGLDVRNVTTPLVPLHIKLCQASLFDHDHANCQE*FYNPLGCCVVQNDIQSL 15

Query: 644 LN 645
           +N
Sbjct: 14  MN 9


>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana chromosome
            II BAC F26H6; putative retroelement pol polyprotein,
            partial (1%)
          Length = 488

 Score =  140 bits (353), Expect = 6e-33
 Identities = 73/133 (54%), Positives = 88/133 (65%)
 Frame = +1

Query: 939  VNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKFVKNGKLVTVNGEEALLVSHLSSF 998
            + FQVMDI ASYSCLLGRPWIH+AGAVTSTLHQKLKFVKNG                   
Sbjct: 1    ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNG------------------- 123

Query: 999  SFIGADDVEGTPFQGFTIEDKNAKRNEASISSLKDAQKVIQAGGSASWGKLIELPENKHR 1058
                    EGT FQG ++E    K+  A+++SLKDAQK +Q G +A WGKLI+L ENK +
Sbjct: 124  ------SAEGTAFQGLSMEGAEPKKVGAAMASLKDAQKAVQEGQAADWGKLIQLCENKRK 285

Query: 1059 EGLGFFPSTGLST 1071
            EGL F P++G+ST
Sbjct: 286  EGLRFSPTSGVST 324


>AL366605 
          Length = 422

 Score =  135 bits (339), Expect = 2e-31
 Identities = 59/124 (47%), Positives = 86/124 (68%)
 Frame = -3

Query: 175 DLCLVPSVQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGP 234
           DLCLV  V VP KFKIPDF++Y G +CP+ H+  YVR+M  Y  +D ++I+ FQ+SL   
Sbjct: 372 DLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMED 193

Query: 235 ASKWYTNLDKTRVQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRD 294
           A++WYT+L K  + TF +L  AF   Y +N  + P+R  L++++Q  +E+F+EYAQRWR 
Sbjct: 192 AAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 13

Query: 295 TAAQ 298
            AA+
Sbjct: 12  AAAR 1


>TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC 4.6.1.1)
           (ATP pyrophosphate-lyase) (Adenylyl cyclase). [Yeast],
           partial (0%)
          Length = 665

 Score =  114 bits (286), Expect = 3e-25
 Identities = 70/189 (37%), Positives = 88/189 (46%), Gaps = 3/189 (1%)
 Frame = +3

Query: 394 IAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQ 453
           +  +T        TN+ P + Q PQ P  P  PQ P+                    QQ 
Sbjct: 180 VEKLTSLVSSLMATNDPPLVQQRPQSPYQPMCPQKPR--------------------QQA 299

Query: 454 PYQQFPYQQYPQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAP 513
           P Q  P  Q PQ+   Q   Q+  Q         +PIPV YA+LLP LLKKNL+QT   P
Sbjct: 300 PRQSIPQNQVPQKFIPQNQVQKASQ--------CDPIPVKYADLLPILLKKNLIQTLPLP 455

Query: 514 PIPEKLPSWYRLDQTCDFHEGGRGHNIETCYAFKSIVQRLINDGKITFTDSAPNV---QT 570
            +P  LP WYR D  C FH+G  GH+ E CY  K  VQ+LI +   +F D    V   Q 
Sbjct: 456 RVPNSLPPWYRPDLNCVFHQGAPGHDTEQCYPLKEEVQKLIENNVWSFDDQDIKVLLQQQ 635

Query: 571 NPLPNHGAA 579
           +  P+ GAA
Sbjct: 636 HLAPHSGAA 662


>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (2%)
          Length = 592

 Score =  103 bits (258), Expect = 6e-22
 Identities = 65/170 (38%), Positives = 97/170 (56%)
 Frame = -1

Query: 1767 KDERL*RATIRRRS*SRFSVGFDI*WGCQCIRQRHRGSTPYS*RCSHPFHSKTPV*LHEQ 1826
            K +RL R     RS S+  +GF +*W CQC+  R+  S        HPF+    V +++Q
Sbjct: 592  KIKRLRRTVDW*RSRSQ*QMGFSL*WCCQCLW*RNWSSHCIPAGALHPFYRPDSVRMYKQ 413

Query: 1827 HR*I*SLHHGY*RSH*SKNQEHRNIWRFSSRNQPDQRKMGNSSCRTNTLSRLCKTFIDLL 1886
            + *+*S++     S+* +NQ  R++WRF + +QPDQ  MG+  C++++L RLC+ F DL 
Sbjct: 412  YG*V*SMYLWDRGSN*HENQTPRHLWRFCTCHQPDQG*MGDPPCQSDSLPRLCEAFADLF 233

Query: 1887 QQSGITSYPSG*ESDG*CLGYFVFNDQGESSQ*RATNQCQIP**TRLCVC 1936
             +S    Y S  E +G*C GY + +   +  +* A NQ   P* T  CVC
Sbjct: 232  YKS*AAPYSS*REPNG*CSGYSILHVSSKPLE*CANNQSATP*KTFTCVC 83


>BE124481 
          Length = 538

 Score = 94.0 bits (232), Expect = 6e-19
 Identities = 54/146 (36%), Positives = 67/146 (44%)
 Frame = +3

Query: 394 IAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQ 453
           +  +T        TN+ P + Q PQ P  P  PQ P+                    QQ 
Sbjct: 183 VEKLTSLVSSLMATNDPPLVQQRPQSPYQPMCPQKPR--------------------QQA 302

Query: 454 PYQQFPYQQYPQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAP 513
           P Q  P  Q PQ+   Q   Q+  Q         +PIPV YA+LLP LLKKNL+QT   P
Sbjct: 303 PRQSIPQNQVPQKFIPQNQVQKASQ--------CDPIPVKYADLLPILLKKNLIQTLPLP 458

Query: 514 PIPEKLPSWYRLDQTCDFHEGGRGHN 539
            +P  LP WYR D  C FH+G  GH+
Sbjct: 459 RVPNSLPPWYRPDLNCVFHQGAPGHD 536


>BE942785 
          Length = 460

 Score = 93.6 bits (231), Expect = 8e-19
 Identities = 44/82 (53%), Positives = 60/82 (72%)
 Frame = -2

Query: 978  NGKLVTVNGEEALLVSHLSSFSFIGADDVEGTPFQGFTIEDKNAKRNEASISSLKDAQKV 1037
            +G LVT++GEEA L+S LSSFS I A   EGT FQG T+E    KR+  +++SLKDAQ+ 
Sbjct: 378  SGXLVTIHGEEAYLISQLSSFSCIEAGSAEGTAFQGLTVEGTEPKRDGTAMASLKDAQRA 199

Query: 1038 IQAGGSASWGKLIELPENKHRE 1059
            +Q   +A WG+LI+L ENKH++
Sbjct: 198  VQESQAAGWGRLIQLRENKHKD 133


>AL375831 
          Length = 467

 Score = 70.5 bits (171), Expect(2) = 1e-16
 Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
 Frame = +2

Query: 116 TMTYSAPVIHTIPQTEEPIFHSGNAEAYEEVSDLREKY-DELRRDMKALHEKGKFGKTAY 174
           T   + P++HT+PQ         +    + + ++ E+   ELR +++A        KT  
Sbjct: 56  TAAVTEPLVHTLPQGININTQHRSIPVTKTMEEMMEELAKELRHEIQANRGNADSVKTQ- 232

Query: 175 DLCLVPSVQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAY 216
           DLCLV  V VP KFKIPDF++Y G +CP+ H+  YVR+M  Y
Sbjct: 233 DLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNY 358



 Score = 36.6 bits (83), Expect(2) = 1e-16
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 219 DDQILIYYFQESLTGPASKWYTNLDKTRVQTF 250
           +D ++I+ FQ+SL   A++WYT+L K  + TF
Sbjct: 366 NDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTF 461


>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
            sativa}, partial (2%)
          Length = 384

 Score = 67.0 bits (162), Expect = 8e-11
 Identities = 46/127 (36%), Positives = 71/127 (55%)
 Frame = -3

Query: 1250 REEDHSALWGRTRSD*LGHQRRQERNQGWGIARNKC*KASDRAPQRVC*CVCLVLPRYAG 1309
            R+E HSA  GR  +    ++  Q R+QG   +R + *K    AP R+    C+++ RYA 
Sbjct: 382  RKESHSASPGRD*AYQPRYRGEQARDQGRCCSRGRG*KEDLPAPPRIPGYFCMLV*RYAR 203

Query: 1310 SRH*YCGTSPTFKT*VSASQTKVEKNTS*HGSQNQRRGTETDRRWFPHYIKLPPVVS*HS 1369
            SR * CGTS   K *+S+ Q ++EK++S +GSQ+   G++ D   F H   +  +   + 
Sbjct: 202  SRS*NCGTSDPNKA*MSSRQVEIEKDSSRYGSQD*E*GSKAD*CGFSHDS*VS*MGCQYC 23

Query: 1370 ACSKERW 1376
             C+KE W
Sbjct: 22   TCAKEGW 2


>TC84839 similar to GP|19386827|dbj|BAB86205. hypothetical protein~similar
           to Arabidopsis thaliana chromosome 5  T6I14_10, partial
           (20%)
          Length = 819

 Score = 51.2 bits (121), Expect = 5e-06
 Identities = 38/107 (35%), Positives = 45/107 (41%), Gaps = 5/107 (4%)
 Frame = +1

Query: 423 PQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQP----YQQFPYQQYPQQNFQQQPYQQRPQ 478
           P  PQ+ Q  Q+   Q  QQQ +QQ   QQQP    +QQ   Q  P  +F + P    PQ
Sbjct: 163 PHNPQHQQHQQHQQQQQQQQQQYQQHQQQQQPPHFHHQQQQQQSGPGPDFHRGPPPPMPQ 342

Query: 479 QPRP-PRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPEKLPSWYR 524
           QP P  R P        +E LPG            PP P   P  YR
Sbjct: 343 QPPPMMRQPSASSTNLGSEFLPG-----------GPPGPPGPPPHYR 450


>TC87407 similar to PIR|T49945|T49945 periaxin-like protein - Arabidopsis
           thaliana, partial (44%)
          Length = 1559

 Score = 50.1 bits (118), Expect = 1e-05
 Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
 Frame = +3

Query: 409 NHPQIP--QYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQ 466
           N P++P  ++P++P+ P++P+ P+FP+ P P+  +          + P  + P  + P+ 
Sbjct: 342 NVPELPKLEFPKLPELPKVPELPKFPELPKPELPKVPELSMPEIPKIP--ELPKPELPKL 515

Query: 467 NFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPE 517
           N  + P   + +QP+ P +P + +P       P + K   +     P +PE
Sbjct: 516 NAPELP---KLEQPKVPELPKHELPKVSELPKPDIPKVPELPKPELPKVPE 659


>TC92466 similar to GP|11141605|gb|AAG32022.1 LEUNIG {Arabidopsis thaliana},
           partial (14%)
          Length = 632

 Score = 47.0 bits (110), Expect = 9e-05
 Identities = 28/62 (45%), Positives = 32/62 (51%)
 Frame = +1

Query: 421 QYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQQP 480
           Q  Q  Q  Q PQ    Q+ QQQ  Q    QQ   Q+   QQ  QQ  QQQP Q +PQQP
Sbjct: 373 QQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQLLMQRHAQQQQQQQQHQQQP-QSQPQQP 549

Query: 481 RP 482
           +P
Sbjct: 550 QP 555



 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +1

Query: 427 QYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQ-QPRPPR 484
           Q  Q  Q   PQ  Q Q+ QQQ  Q    QQ   Q++ QQ  QQQ +QQ+PQ QP+ P+
Sbjct: 376 QQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQLLMQRHAQQQQQQQQHQQQPQSQPQQPQ 552



 Score = 36.6 bits (83), Expect = 0.12
 Identities = 23/58 (39%), Positives = 26/58 (44%)
 Frame = +1

Query: 405 QQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQ 462
           QQ    PQ  Q+ Q  Q   +       Q  + Q  QQQ  QQQP Q QP Q  P QQ
Sbjct: 394 QQQQPQPQQSQHAQQQQQQHMQMQQLLMQRHAQQQQQQQQHQQQP-QSQPQQPQPQQQ 564



 Score = 36.2 bits (82), Expect = 0.15
 Identities = 28/62 (45%), Positives = 32/62 (51%)
 Frame = +1

Query: 405 QQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYP 464
           QQ    PQ PQ  Q  Q  Q  Q+ Q  Q    ++ QQQ  QQQ +QQQP  Q P Q  P
Sbjct: 388 QQQQQQPQ-PQQSQHAQQQQ-QQHMQMQQLLMQRHAQQQQ-QQQQHQQQPQSQ-PQQPQP 555

Query: 465 QQ 466
           QQ
Sbjct: 556 QQ 561



 Score = 35.0 bits (79), Expect = 0.34
 Identities = 26/69 (37%), Positives = 30/69 (42%), Gaps = 10/69 (14%)
 Frame = +1

Query: 418 QIPQYPQIPQYPQFPQNPSPQNTQQQNFQ----------QQPYQQQPYQQFPYQQYPQQN 467
           Q  Q  Q  Q PQ  Q+   Q  QQQ+ Q          QQ  QQQ +QQ P  Q  Q  
Sbjct: 373 QQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQLLMQRHAQQQQQQQQHQQQPQSQPQQPQ 552

Query: 468 FQQQPYQQR 476
            QQQ  + R
Sbjct: 553 PQQQQNRDR 579



 Score = 34.7 bits (78), Expect = 0.45
 Identities = 28/75 (37%), Positives = 33/75 (43%)
 Frame = +1

Query: 405 QQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYP 464
           +Q     Q  Q PQ PQ  Q  Q  Q       Q   Q++ QQQ  QQQ      +QQ P
Sbjct: 370 EQQQQQQQQQQQPQ-PQQSQHAQQQQQQHMQMQQLLMQRHAQQQQQQQQ------HQQQP 528

Query: 465 QQNFQQQPYQQRPQQ 479
               Q QP Q +PQQ
Sbjct: 529 ----QSQPQQPQPQQ 561


>TC79570 similar to PIR|F86427|F86427 auxin response factor 6 (ARF6)
           [imported] - Arabidopsis thaliana, partial (15%)
          Length = 1143

 Score = 44.7 bits (104), Expect = 4e-04
 Identities = 29/93 (31%), Positives = 40/93 (42%), Gaps = 2/93 (2%)
 Frame = +2

Query: 389 PAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYP--QFPQNPSPQNTQQQNFQ 446
           P+ QH A++     P   +N +  + Q   + Q      +P  Q  Q+PS    Q Q FQ
Sbjct: 347 PSKQHPASLLQFQQPQNFSNGNAALMQNQMLQQSQPHQAFPKNQESQHPSQSQAQTQQFQ 526

Query: 447 QQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQQ 479
           Q    Q  +    Y    QQ  QQQ  QQ+ QQ
Sbjct: 527 QLLQHQHSFTNQNYHMQQQQQQQQQQQQQQQQQ 625



 Score = 38.5 bits (88), Expect = 0.031
 Identities = 33/98 (33%), Positives = 43/98 (43%)
 Frame = +2

Query: 378 MVTHGRPQQTYPAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSP 437
           M+   +P Q +P  Q       + HP Q   +  Q  Q+ Q+ Q+    Q+    QN   
Sbjct: 434 MLQQSQPHQAFPKNQE------SQHPSQ---SQAQTQQFQQLLQH----QHSFTNQNYHM 574

Query: 438 QNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQ 475
           Q  QQQ  QQQ  QQQ   Q   QQ  QQ  Q   +QQ
Sbjct: 575 QQQQQQQ-QQQQQQQQQQHQQQQQQQSQQQQQVVDHQQ 685


>TC80046 similar to SP|P22699|GUN6_DICDI Endoglucanase precursor (EC
           3.2.1.4) (Endo-1 4-beta-glucanase) (Spore germination
           protein 270-6), partial (11%)
          Length = 643

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 37/96 (38%), Positives = 49/96 (50%), Gaps = 10/96 (10%)
 Frame = +1

Query: 406 QTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQ 465
           QT + P +PQ P  PQ P  PQ P  PQ P PQ   Q+  Q+ P  Q+P Q+ P  Q P 
Sbjct: 253 QTRSLP-LPQRP--PQRP--PQRP--PQKP-PQRPPQKPPQRPP--QRPPQKLP--QRPP 396

Query: 466 QNFQQQPYQQRPQQ----------PRPPRMPINPIP 491
           Q   Q+P Q+ PQ+          P P + P+ P+P
Sbjct: 397 QKLPQRPPQKLPQKLPQKPPQRPLPHPQKPPLRPLP 504



 Score = 40.0 bits (92), Expect = 0.011
 Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
 Frame = +1

Query: 399 PTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQF 458
           P   P +     PQ P  PQ P  PQ P  PQ P    PQ   Q+  Q+ P  Q+P Q+ 
Sbjct: 274 PQRPPQRPPQRPPQKP--PQRP--PQKP--PQRPPQRPPQKLPQRPPQKLP--QRPPQKL 429

Query: 459 PYQQYPQQNFQQQ-PYQQRPQQ---PRPPRMPINPIP 491
           P Q+ PQ+  Q+  P+ Q+P     P P + P+ P+P
Sbjct: 430 P-QKLPQKPPQRPLPHPQKPPLRPLPHPQKPPLRPLP 537



 Score = 39.3 bits (90), Expect = 0.018
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +1

Query: 399 PTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQF 458
           P   P +     PQ P  PQ P      + PQ P    PQ   Q+  Q+ P Q+ P +  
Sbjct: 298 PQRPPQKPPQRPPQKP--PQRPPQRPPQKLPQRPPQKLPQRPPQKLPQKLP-QKPPQRPL 468

Query: 459 PYQQYPQQNFQQQPYQQRPQQ---PRPPRMPINPIP 491
           P+ Q P    +  P+ Q+P     P P + P+ P+P
Sbjct: 469 PHPQKPP--LRPLPHPQKPPLRPLPHPQKPPLRPLP 570



 Score = 37.7 bits (86), Expect = 0.053
 Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 11/104 (10%)
 Frame = +1

Query: 399 PTSHPFQQTNNHPQIPQYPQIPQYP--QIPQYP--QFPQNPSPQNTQQQNFQQQPYQQQP 454
           P   P Q+    P  PQ P  PQ P  ++PQ P  + PQ P PQ   Q+  Q+ P +  P
Sbjct: 307 PPQKPPQRPPQKP--PQRP--PQRPPQKLPQRPPQKLPQRP-PQKLPQKLPQKPPQRPLP 471

Query: 455 YQQFPYQQ---YPQQN-FQQQPYQQRPQQ---PRPPRMPINPIP 491
           + Q P  +   +PQ+   +  P+ Q+P     P P + P+ P+P
Sbjct: 472 HPQKPPLRPLPHPQKPPLRPLPHPQKPPLRPLPHPQKPPLRPLP 603


>CA859989 similar to GP|18308125|gb bromodomain-containing protein BRD4 long
           variant {Mus musculus}, partial (1%)
          Length = 375

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
 Frame = +3

Query: 430 QFPQNPSPQNTQQQNFQQQPYQQQPYQ--QFPY-QQYPQQNFQQQ-------PYQQRPQQ 479
           + P + + QN  QQ  QQ P +QQ Y+    PY QQ PQ   + Q       PYQQ+ QQ
Sbjct: 18  EVPTSINTQNVTQQQQQQPPPEQQRYE*PASPYHQQRPQPTPEHQRYGQPAPPYQQQQQQ 197

Query: 480 PRPP 483
           P+PP
Sbjct: 198 PQPP 209



 Score = 32.3 bits (72), Expect = 2.2
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +3

Query: 403 PFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQ 462
           P QQ    P  P + Q PQ    P++ ++ Q P+P   QQQ   Q P  Q P   FP  +
Sbjct: 78  PEQQRYE*PASPYHQQRPQ--PTPEHQRYGQ-PAPPYQQQQQQPQPPPSQGPGISFPEPK 248

Query: 463 YPQQ 466
           + +Q
Sbjct: 249 HYKQ 260


>TC79058 homologue to GP|20197423|gb|AAM15069.1 unknown protein {Arabidopsis
           thaliana}, partial (71%)
          Length = 627

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 28/73 (38%), Positives = 33/73 (44%), Gaps = 2/73 (2%)
 Frame = +1

Query: 409 NHPQIPQY--PQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQ 466
           +H Q P    P    YP    YP       P    QQ + QQ Y   P Q +P Q YPQQ
Sbjct: 100 DHQQQPPVGVPPPQGYPPKDAYP-------PPGYPQQGYPQQGY---PPQGYPQQGYPQQ 249

Query: 467 NFQQQPYQQRPQQ 479
            +  Q Y Q+PQQ
Sbjct: 250 GYPPQQYAQQPQQ 288



 Score = 39.7 bits (91), Expect = 0.014
 Identities = 28/75 (37%), Positives = 31/75 (41%)
 Frame = +1

Query: 402 HPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQ 461
           H  Q     P    YP    YP  P YPQ       Q   QQ +  Q Y QQ Y   P Q
Sbjct: 103 HQQQPPVGVPPPQGYPPKDAYPP-PGYPQ-------QGYPQQGYPPQGYPQQGY---PQQ 249

Query: 462 QYPQQNFQQQPYQQR 476
            YP Q + QQP Q +
Sbjct: 250 GYPPQQYAQQPQQNK 294


>CA860196 weakly similar to GP|1654183|gb|A MYOD-like DNA-binding protein
           {Trichinella spiralis}, partial (7%)
          Length = 398

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 24/50 (48%), Positives = 28/50 (56%)
 Frame = +1

Query: 437 PQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQQPRPPRMP 486
           PQ   QQ   QQPY QQ  QQ+  Q  PQQN  + P Q  PQ   PP++P
Sbjct: 103 PQQYGQQQHVQQPYGQQ--QQYSQQYQPQQN--RPPLQMAPQSGPPPQVP 240



 Score = 35.8 bits (81), Expect = 0.20
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
 Frame = +1

Query: 443 QNFQQQPYQQQPYQQFPY---QQYPQQNFQQQPY--------QQRPQQPRPP 483
           Q++ + P+ Q   QQ  Y   QQY QQ   QQPY        Q +PQQ RPP
Sbjct: 43  QSYGRPPHSQGQGQQHNYGGPQQYGQQQHVQQPYGQQQQYSQQYQPQQNRPP 198


>TC89480 similar to GP|20260684|gb|AAM13240.1 unknown protein {Arabidopsis
           thaliana}, partial (43%)
          Length = 1068

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 32/91 (35%), Positives = 42/91 (45%)
 Frame = +1

Query: 398 TPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQ 457
           TP S+P  Q+ +  Q  Q P +     + Q  QF         QQQ FQQ    Q  +QQ
Sbjct: 94  TPNSNPQIQSQSQSQSNQDPNL----YLQQQQQFLHQQ-----QQQPFQQSQTTQSQFQQ 246

Query: 458 FPYQQYPQQNFQQQPYQQRPQQPRPPRMPIN 488
              QQ  QQ  QQ+  QQ+ QQ + P+   N
Sbjct: 247 QQQQQLYQQQQQQRILQQQQQQLQQPQQQQN 339


>BF521580 homologue to GP|20197423|gb|A unknown protein {Arabidopsis
           thaliana}, partial (42%)
          Length = 334

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 25/61 (40%), Positives = 29/61 (46%)
 Frame = +1

Query: 419 IPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQ 478
           I  YP    YP       P    QQ + QQ Y   P Q +P Q YPQQ +  Q Y Q+PQ
Sbjct: 1   IKGYPPKDAYP-------PPGYPQQGYPQQGY---PPQGYPQQGYPQQGYPPQQYAQQPQ 150

Query: 479 Q 479
           Q
Sbjct: 151 Q 153



 Score = 39.7 bits (91), Expect = 0.014
 Identities = 26/64 (40%), Positives = 29/64 (44%)
 Frame = +1

Query: 413 IPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQP 472
           I  YP    YP  P YPQ       Q   QQ +  Q Y QQ Y   P Q YP Q + QQP
Sbjct: 1   IKGYPPKDAYPP-PGYPQ-------QGYPQQGYPPQGYPQQGY---PQQGYPPQQYAQQP 147

Query: 473 YQQR 476
            Q +
Sbjct: 148 QQNK 159


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.343    0.149    0.504 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,540,974
Number of Sequences: 36976
Number of extensions: 1157723
Number of successful extensions: 16366
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 6082
Number of HSP's successfully gapped in prelim test: 783
Number of HSP's that attempted gapping in prelim test: 6597
Number of HSP's gapped (non-prelim): 10155
length of query: 2359
length of database: 9,014,727
effective HSP length: 112
effective length of query: 2247
effective length of database: 4,873,415
effective search space: 10950563505
effective search space used: 10950563505
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 66 (30.0 bits)


Medicago: description of AC130806.6