
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130806.6 + phase: 0 /pseudo
(2359 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 317 3e-86
CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fra... 165 2e-40
AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia... 140 6e-33
AL366605 135 2e-31
TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC ... 114 3e-25
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 103 6e-22
BE124481 94 6e-19
BE942785 94 8e-19
AL375831 70 1e-16
AL367832 weakly similar to GP|14091845|gb Putative retroelement ... 67 8e-11
TC84839 similar to GP|19386827|dbj|BAB86205. hypothetical protei... 51 5e-06
TC87407 similar to PIR|T49945|T49945 periaxin-like protein - Ara... 50 1e-05
TC92466 similar to GP|11141605|gb|AAG32022.1 LEUNIG {Arabidopsis... 47 9e-05
TC79570 similar to PIR|F86427|F86427 auxin response factor 6 (AR... 45 4e-04
TC80046 similar to SP|P22699|GUN6_DICDI Endoglucanase precursor ... 43 0.001
CA859989 similar to GP|18308125|gb bromodomain-containing protei... 43 0.001
TC79058 homologue to GP|20197423|gb|AAM15069.1 unknown protein {... 43 0.002
CA860196 weakly similar to GP|1654183|gb|A MYOD-like DNA-binding... 43 0.002
TC89480 similar to GP|20260684|gb|AAM13240.1 unknown protein {Ar... 43 0.002
BF521580 homologue to GP|20197423|gb|A unknown protein {Arabidop... 42 0.002
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 317 bits (812), Expect = 3e-86
Identities = 163/167 (97%), Positives = 164/167 (97%)
Frame = -1
Query: 1671 EDMLCSSLGCQTPPSLYD*SHYLAGI*NGSNQVHI*EARFDRKDCTVADATI*I*YRVPF 1730
EDMLCSSLGCQ PPSLYD*SHYLAGI*NGSNQVHI*EARFDRKDCTVADATI I*YRVPF
Sbjct: 636 EDMLCSSLGCQAPPSLYD*SHYLAGI*NGSNQVHI*EARFDRKDCTVADATIGI*YRVPF 457
Query: 1731 PEGN*RQYSC*SLGSPTT*RLSTYQV*LS**RDYVSKDERL*RATIRRRS*SRFSVGFDI 1790
PEGN*RQYSC*SLGSPTT*RLSTYQV*LS**RDYVSKDERL*RATIRRRS*SRFSVGFDI
Sbjct: 456 PEGN*RQYSC*SLGSPTT*RLSTYQV*LS**RDYVSKDERL*RATIRRRS*SRFSVGFDI 277
Query: 1791 *WGCQCIRQRHRGSTPYS*RCSHPFHSKTPV*LHEQHR*I*SLHHGY 1837
*WGCQCIRQRHRGSTPYS*RCSHPFHSKTPV*LHEQHR*I SLHHG+
Sbjct: 276 *WGCQCIRQRHRGSTPYS*RCSHPFHSKTPV*LHEQHR*IRSLHHGH 136
Score = 50.8 bits (120), Expect(2) = 2e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 1636 GLCARTTR*NRKKRARHLLFKQEV 1659
GLCARTTR*NRKKRARHLLFKQEV
Sbjct: 34 GLCARTTR*NRKKRARHLLFKQEV 105
Score = 20.8 bits (42), Expect(2) = 2e-06
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 1625 DHVPNGVRKFHG 1636
DHVPN VR HG
Sbjct: 3 DHVPNSVR-IHG 35
>CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fragment),
partial (9%)
Length = 624
Score = 165 bits (418), Expect = 2e-40
Identities = 88/182 (48%), Positives = 115/182 (62%)
Frame = -2
Query: 464 PQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPEKLPSWY 523
P +N +QQR Q P P+ IP+ YAE LP LL + R P P+ LP +
Sbjct: 539 PPRNNHPPVHQQRQ*QQARPTFPL--IPMLYAE*LPTLLLRGHCTIRQGKPPPDPLPPRF 366
Query: 524 RLDQTCDFHEGGRGHNIETCYAFKSIVQRLINDGKITFTDSAPNVQTNPLPNHGAATVNM 583
R D CDFH+G GH++E CYA K IV++LIN GK+TF ++ P+V NPLPNH A VNM
Sbjct: 365 RSDLKCDFHQGALGHDVEGCYALKHIVKKLINQGKLTFENNVPHVLDNPLPNH--AAVNM 192
Query: 584 IEDCQKTRPILNVQHIRTPLVPLHAKLCKVDLFEHDHDLCEICLMNSGGCQKVRNDIQGL 643
IE ++ P L+V+++ TPLVPLH KLC+ LF+HDH C+ N GC V+NDIQ L
Sbjct: 191 IEVYEEA-PGLDVRNVTTPLVPLHIKLCQASLFDHDHANCQE*FYNPLGCCVVQNDIQSL 15
Query: 644 LN 645
+N
Sbjct: 14 MN 9
>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana chromosome
II BAC F26H6; putative retroelement pol polyprotein,
partial (1%)
Length = 488
Score = 140 bits (353), Expect = 6e-33
Identities = 73/133 (54%), Positives = 88/133 (65%)
Frame = +1
Query: 939 VNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKFVKNGKLVTVNGEEALLVSHLSSF 998
+ FQVMDI ASYSCLLGRPWIH+AGAVTSTLHQKLKFVKNG
Sbjct: 1 ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNG------------------- 123
Query: 999 SFIGADDVEGTPFQGFTIEDKNAKRNEASISSLKDAQKVIQAGGSASWGKLIELPENKHR 1058
EGT FQG ++E K+ A+++SLKDAQK +Q G +A WGKLI+L ENK +
Sbjct: 124 ------SAEGTAFQGLSMEGAEPKKVGAAMASLKDAQKAVQEGQAADWGKLIQLCENKRK 285
Query: 1059 EGLGFFPSTGLST 1071
EGL F P++G+ST
Sbjct: 286 EGLRFSPTSGVST 324
>AL366605
Length = 422
Score = 135 bits (339), Expect = 2e-31
Identities = 59/124 (47%), Positives = 86/124 (68%)
Frame = -3
Query: 175 DLCLVPSVQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGP 234
DLCLV V VP KFKIPDF++Y G +CP+ H+ YVR+M Y +D ++I+ FQ+SL
Sbjct: 372 DLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMED 193
Query: 235 ASKWYTNLDKTRVQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRD 294
A++WYT+L K + TF +L AF Y +N + P+R L++++Q +E+F+EYAQRWR
Sbjct: 192 AAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 13
Query: 295 TAAQ 298
AA+
Sbjct: 12 AAAR 1
>TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC 4.6.1.1)
(ATP pyrophosphate-lyase) (Adenylyl cyclase). [Yeast],
partial (0%)
Length = 665
Score = 114 bits (286), Expect = 3e-25
Identities = 70/189 (37%), Positives = 88/189 (46%), Gaps = 3/189 (1%)
Frame = +3
Query: 394 IAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQ 453
+ +T TN+ P + Q PQ P P PQ P+ QQ
Sbjct: 180 VEKLTSLVSSLMATNDPPLVQQRPQSPYQPMCPQKPR--------------------QQA 299
Query: 454 PYQQFPYQQYPQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAP 513
P Q P Q PQ+ Q Q+ Q +PIPV YA+LLP LLKKNL+QT P
Sbjct: 300 PRQSIPQNQVPQKFIPQNQVQKASQ--------CDPIPVKYADLLPILLKKNLIQTLPLP 455
Query: 514 PIPEKLPSWYRLDQTCDFHEGGRGHNIETCYAFKSIVQRLINDGKITFTDSAPNV---QT 570
+P LP WYR D C FH+G GH+ E CY K VQ+LI + +F D V Q
Sbjct: 456 RVPNSLPPWYRPDLNCVFHQGAPGHDTEQCYPLKEEVQKLIENNVWSFDDQDIKVLLQQQ 635
Query: 571 NPLPNHGAA 579
+ P+ GAA
Sbjct: 636 HLAPHSGAA 662
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 103 bits (258), Expect = 6e-22
Identities = 65/170 (38%), Positives = 97/170 (56%)
Frame = -1
Query: 1767 KDERL*RATIRRRS*SRFSVGFDI*WGCQCIRQRHRGSTPYS*RCSHPFHSKTPV*LHEQ 1826
K +RL R RS S+ +GF +*W CQC+ R+ S HPF+ V +++Q
Sbjct: 592 KIKRLRRTVDW*RSRSQ*QMGFSL*WCCQCLW*RNWSSHCIPAGALHPFYRPDSVRMYKQ 413
Query: 1827 HR*I*SLHHGY*RSH*SKNQEHRNIWRFSSRNQPDQRKMGNSSCRTNTLSRLCKTFIDLL 1886
+ *+*S++ S+* +NQ R++WRF + +QPDQ MG+ C++++L RLC+ F DL
Sbjct: 412 YG*V*SMYLWDRGSN*HENQTPRHLWRFCTCHQPDQG*MGDPPCQSDSLPRLCEAFADLF 233
Query: 1887 QQSGITSYPSG*ESDG*CLGYFVFNDQGESSQ*RATNQCQIP**TRLCVC 1936
+S Y S E +G*C GY + + + +* A NQ P* T CVC
Sbjct: 232 YKS*AAPYSS*REPNG*CSGYSILHVSSKPLE*CANNQSATP*KTFTCVC 83
>BE124481
Length = 538
Score = 94.0 bits (232), Expect = 6e-19
Identities = 54/146 (36%), Positives = 67/146 (44%)
Frame = +3
Query: 394 IAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQ 453
+ +T TN+ P + Q PQ P P PQ P+ QQ
Sbjct: 183 VEKLTSLVSSLMATNDPPLVQQRPQSPYQPMCPQKPR--------------------QQA 302
Query: 454 PYQQFPYQQYPQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAP 513
P Q P Q PQ+ Q Q+ Q +PIPV YA+LLP LLKKNL+QT P
Sbjct: 303 PRQSIPQNQVPQKFIPQNQVQKASQ--------CDPIPVKYADLLPILLKKNLIQTLPLP 458
Query: 514 PIPEKLPSWYRLDQTCDFHEGGRGHN 539
+P LP WYR D C FH+G GH+
Sbjct: 459 RVPNSLPPWYRPDLNCVFHQGAPGHD 536
>BE942785
Length = 460
Score = 93.6 bits (231), Expect = 8e-19
Identities = 44/82 (53%), Positives = 60/82 (72%)
Frame = -2
Query: 978 NGKLVTVNGEEALLVSHLSSFSFIGADDVEGTPFQGFTIEDKNAKRNEASISSLKDAQKV 1037
+G LVT++GEEA L+S LSSFS I A EGT FQG T+E KR+ +++SLKDAQ+
Sbjct: 378 SGXLVTIHGEEAYLISQLSSFSCIEAGSAEGTAFQGLTVEGTEPKRDGTAMASLKDAQRA 199
Query: 1038 IQAGGSASWGKLIELPENKHRE 1059
+Q +A WG+LI+L ENKH++
Sbjct: 198 VQESQAAGWGRLIQLRENKHKD 133
>AL375831
Length = 467
Score = 70.5 bits (171), Expect(2) = 1e-16
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +2
Query: 116 TMTYSAPVIHTIPQTEEPIFHSGNAEAYEEVSDLREKY-DELRRDMKALHEKGKFGKTAY 174
T + P++HT+PQ + + + ++ E+ ELR +++A KT
Sbjct: 56 TAAVTEPLVHTLPQGININTQHRSIPVTKTMEEMMEELAKELRHEIQANRGNADSVKTQ- 232
Query: 175 DLCLVPSVQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAY 216
DLCLV V VP KFKIPDF++Y G +CP+ H+ YVR+M Y
Sbjct: 233 DLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNY 358
Score = 36.6 bits (83), Expect(2) = 1e-16
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3
Query: 219 DDQILIYYFQESLTGPASKWYTNLDKTRVQTF 250
+D ++I+ FQ+SL A++WYT+L K + TF
Sbjct: 366 NDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTF 461
>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
sativa}, partial (2%)
Length = 384
Score = 67.0 bits (162), Expect = 8e-11
Identities = 46/127 (36%), Positives = 71/127 (55%)
Frame = -3
Query: 1250 REEDHSALWGRTRSD*LGHQRRQERNQGWGIARNKC*KASDRAPQRVC*CVCLVLPRYAG 1309
R+E HSA GR + ++ Q R+QG +R + *K AP R+ C+++ RYA
Sbjct: 382 RKESHSASPGRD*AYQPRYRGEQARDQGRCCSRGRG*KEDLPAPPRIPGYFCMLV*RYAR 203
Query: 1310 SRH*YCGTSPTFKT*VSASQTKVEKNTS*HGSQNQRRGTETDRRWFPHYIKLPPVVS*HS 1369
SR * CGTS K *+S+ Q ++EK++S +GSQ+ G++ D F H + + +
Sbjct: 202 SRS*NCGTSDPNKA*MSSRQVEIEKDSSRYGSQD*E*GSKAD*CGFSHDS*VS*MGCQYC 23
Query: 1370 ACSKERW 1376
C+KE W
Sbjct: 22 TCAKEGW 2
>TC84839 similar to GP|19386827|dbj|BAB86205. hypothetical protein~similar
to Arabidopsis thaliana chromosome 5 T6I14_10, partial
(20%)
Length = 819
Score = 51.2 bits (121), Expect = 5e-06
Identities = 38/107 (35%), Positives = 45/107 (41%), Gaps = 5/107 (4%)
Frame = +1
Query: 423 PQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQP----YQQFPYQQYPQQNFQQQPYQQRPQ 478
P PQ+ Q Q+ Q QQQ +QQ QQQP +QQ Q P +F + P PQ
Sbjct: 163 PHNPQHQQHQQHQQQQQQQQQQYQQHQQQQQPPHFHHQQQQQQSGPGPDFHRGPPPPMPQ 342
Query: 479 QPRP-PRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPEKLPSWYR 524
QP P R P +E LPG PP P P YR
Sbjct: 343 QPPPMMRQPSASSTNLGSEFLPG-----------GPPGPPGPPPHYR 450
>TC87407 similar to PIR|T49945|T49945 periaxin-like protein - Arabidopsis
thaliana, partial (44%)
Length = 1559
Score = 50.1 bits (118), Expect = 1e-05
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = +3
Query: 409 NHPQIP--QYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQ 466
N P++P ++P++P+ P++P+ P+FP+ P P+ + + P + P + P+
Sbjct: 342 NVPELPKLEFPKLPELPKVPELPKFPELPKPELPKVPELSMPEIPKIP--ELPKPELPKL 515
Query: 467 NFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPE 517
N + P + +QP+ P +P + +P P + K + P +PE
Sbjct: 516 NAPELP---KLEQPKVPELPKHELPKVSELPKPDIPKVPELPKPELPKVPE 659
>TC92466 similar to GP|11141605|gb|AAG32022.1 LEUNIG {Arabidopsis thaliana},
partial (14%)
Length = 632
Score = 47.0 bits (110), Expect = 9e-05
Identities = 28/62 (45%), Positives = 32/62 (51%)
Frame = +1
Query: 421 QYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQQP 480
Q Q Q Q PQ Q+ QQQ Q QQ Q+ QQ QQ QQQP Q +PQQP
Sbjct: 373 QQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQLLMQRHAQQQQQQQQHQQQP-QSQPQQP 549
Query: 481 RP 482
+P
Sbjct: 550 QP 555
Score = 46.6 bits (109), Expect = 1e-04
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 427 QYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQ-QPRPPR 484
Q Q Q PQ Q Q+ QQQ Q QQ Q++ QQ QQQ +QQ+PQ QP+ P+
Sbjct: 376 QQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQLLMQRHAQQQQQQQQHQQQPQSQPQQPQ 552
Score = 36.6 bits (83), Expect = 0.12
Identities = 23/58 (39%), Positives = 26/58 (44%)
Frame = +1
Query: 405 QQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQ 462
QQ PQ Q+ Q Q + Q + Q QQQ QQQP Q QP Q P QQ
Sbjct: 394 QQQQPQPQQSQHAQQQQQQHMQMQQLLMQRHAQQQQQQQQHQQQP-QSQPQQPQPQQQ 564
Score = 36.2 bits (82), Expect = 0.15
Identities = 28/62 (45%), Positives = 32/62 (51%)
Frame = +1
Query: 405 QQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYP 464
QQ PQ PQ Q Q Q Q+ Q Q ++ QQQ QQQ +QQQP Q P Q P
Sbjct: 388 QQQQQQPQ-PQQSQHAQQQQ-QQHMQMQQLLMQRHAQQQQ-QQQQHQQQPQSQ-PQQPQP 555
Query: 465 QQ 466
QQ
Sbjct: 556 QQ 561
Score = 35.0 bits (79), Expect = 0.34
Identities = 26/69 (37%), Positives = 30/69 (42%), Gaps = 10/69 (14%)
Frame = +1
Query: 418 QIPQYPQIPQYPQFPQNPSPQNTQQQNFQ----------QQPYQQQPYQQFPYQQYPQQN 467
Q Q Q Q PQ Q+ Q QQQ+ Q QQ QQQ +QQ P Q Q
Sbjct: 373 QQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQLLMQRHAQQQQQQQQHQQQPQSQPQQPQ 552
Query: 468 FQQQPYQQR 476
QQQ + R
Sbjct: 553 PQQQQNRDR 579
Score = 34.7 bits (78), Expect = 0.45
Identities = 28/75 (37%), Positives = 33/75 (43%)
Frame = +1
Query: 405 QQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYP 464
+Q Q Q PQ PQ Q Q Q Q Q++ QQQ QQQ +QQ P
Sbjct: 370 EQQQQQQQQQQQPQ-PQQSQHAQQQQQQHMQMQQLLMQRHAQQQQQQQQ------HQQQP 528
Query: 465 QQNFQQQPYQQRPQQ 479
Q QP Q +PQQ
Sbjct: 529 ----QSQPQQPQPQQ 561
>TC79570 similar to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (15%)
Length = 1143
Score = 44.7 bits (104), Expect = 4e-04
Identities = 29/93 (31%), Positives = 40/93 (42%), Gaps = 2/93 (2%)
Frame = +2
Query: 389 PAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYP--QFPQNPSPQNTQQQNFQ 446
P+ QH A++ P +N + + Q + Q +P Q Q+PS Q Q FQ
Sbjct: 347 PSKQHPASLLQFQQPQNFSNGNAALMQNQMLQQSQPHQAFPKNQESQHPSQSQAQTQQFQ 526
Query: 447 QQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQQ 479
Q Q + Y QQ QQQ QQ+ QQ
Sbjct: 527 QLLQHQHSFTNQNYHMQQQQQQQQQQQQQQQQQ 625
Score = 38.5 bits (88), Expect = 0.031
Identities = 33/98 (33%), Positives = 43/98 (43%)
Frame = +2
Query: 378 MVTHGRPQQTYPAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSP 437
M+ +P Q +P Q + HP Q + Q Q+ Q+ Q+ Q+ QN
Sbjct: 434 MLQQSQPHQAFPKNQE------SQHPSQ---SQAQTQQFQQLLQH----QHSFTNQNYHM 574
Query: 438 QNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQ 475
Q QQQ QQQ QQQ Q QQ QQ Q +QQ
Sbjct: 575 QQQQQQQ-QQQQQQQQQQHQQQQQQQSQQQQQVVDHQQ 685
>TC80046 similar to SP|P22699|GUN6_DICDI Endoglucanase precursor (EC
3.2.1.4) (Endo-1 4-beta-glucanase) (Spore germination
protein 270-6), partial (11%)
Length = 643
Score = 43.1 bits (100), Expect = 0.001
Identities = 37/96 (38%), Positives = 49/96 (50%), Gaps = 10/96 (10%)
Frame = +1
Query: 406 QTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQ 465
QT + P +PQ P PQ P PQ P PQ P PQ Q+ Q+ P Q+P Q+ P Q P
Sbjct: 253 QTRSLP-LPQRP--PQRP--PQRP--PQKP-PQRPPQKPPQRPP--QRPPQKLP--QRPP 396
Query: 466 QNFQQQPYQQRPQQ----------PRPPRMPINPIP 491
Q Q+P Q+ PQ+ P P + P+ P+P
Sbjct: 397 QKLPQRPPQKLPQKLPQKPPQRPLPHPQKPPLRPLP 504
Score = 40.0 bits (92), Expect = 0.011
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Frame = +1
Query: 399 PTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQF 458
P P + PQ P PQ P PQ P PQ P PQ Q+ Q+ P Q+P Q+
Sbjct: 274 PQRPPQRPPQRPPQKP--PQRP--PQKP--PQRPPQRPPQKLPQRPPQKLP--QRPPQKL 429
Query: 459 PYQQYPQQNFQQQ-PYQQRPQQ---PRPPRMPINPIP 491
P Q+ PQ+ Q+ P+ Q+P P P + P+ P+P
Sbjct: 430 P-QKLPQKPPQRPLPHPQKPPLRPLPHPQKPPLRPLP 537
Score = 39.3 bits (90), Expect = 0.018
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = +1
Query: 399 PTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQF 458
P P + PQ P PQ P + PQ P PQ Q+ Q+ P Q+ P +
Sbjct: 298 PQRPPQKPPQRPPQKP--PQRPPQRPPQKLPQRPPQKLPQRPPQKLPQKLP-QKPPQRPL 468
Query: 459 PYQQYPQQNFQQQPYQQRPQQ---PRPPRMPINPIP 491
P+ Q P + P+ Q+P P P + P+ P+P
Sbjct: 469 PHPQKPP--LRPLPHPQKPPLRPLPHPQKPPLRPLP 570
Score = 37.7 bits (86), Expect = 0.053
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 11/104 (10%)
Frame = +1
Query: 399 PTSHPFQQTNNHPQIPQYPQIPQYP--QIPQYP--QFPQNPSPQNTQQQNFQQQPYQQQP 454
P P Q+ P PQ P PQ P ++PQ P + PQ P PQ Q+ Q+ P + P
Sbjct: 307 PPQKPPQRPPQKP--PQRP--PQRPPQKLPQRPPQKLPQRP-PQKLPQKLPQKPPQRPLP 471
Query: 455 YQQFPYQQ---YPQQN-FQQQPYQQRPQQ---PRPPRMPINPIP 491
+ Q P + +PQ+ + P+ Q+P P P + P+ P+P
Sbjct: 472 HPQKPPLRPLPHPQKPPLRPLPHPQKPPLRPLPHPQKPPLRPLP 603
>CA859989 similar to GP|18308125|gb bromodomain-containing protein BRD4 long
variant {Mus musculus}, partial (1%)
Length = 375
Score = 43.1 bits (100), Expect = 0.001
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Frame = +3
Query: 430 QFPQNPSPQNTQQQNFQQQPYQQQPYQ--QFPY-QQYPQQNFQQQ-------PYQQRPQQ 479
+ P + + QN QQ QQ P +QQ Y+ PY QQ PQ + Q PYQQ+ QQ
Sbjct: 18 EVPTSINTQNVTQQQQQQPPPEQQRYE*PASPYHQQRPQPTPEHQRYGQPAPPYQQQQQQ 197
Query: 480 PRPP 483
P+PP
Sbjct: 198 PQPP 209
Score = 32.3 bits (72), Expect = 2.2
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +3
Query: 403 PFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQ 462
P QQ P P + Q PQ P++ ++ Q P+P QQQ Q P Q P FP +
Sbjct: 78 PEQQRYE*PASPYHQQRPQ--PTPEHQRYGQ-PAPPYQQQQQQPQPPPSQGPGISFPEPK 248
Query: 463 YPQQ 466
+ +Q
Sbjct: 249 HYKQ 260
>TC79058 homologue to GP|20197423|gb|AAM15069.1 unknown protein {Arabidopsis
thaliana}, partial (71%)
Length = 627
Score = 42.7 bits (99), Expect = 0.002
Identities = 28/73 (38%), Positives = 33/73 (44%), Gaps = 2/73 (2%)
Frame = +1
Query: 409 NHPQIPQY--PQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQ 466
+H Q P P YP YP P QQ + QQ Y P Q +P Q YPQQ
Sbjct: 100 DHQQQPPVGVPPPQGYPPKDAYP-------PPGYPQQGYPQQGY---PPQGYPQQGYPQQ 249
Query: 467 NFQQQPYQQRPQQ 479
+ Q Y Q+PQQ
Sbjct: 250 GYPPQQYAQQPQQ 288
Score = 39.7 bits (91), Expect = 0.014
Identities = 28/75 (37%), Positives = 31/75 (41%)
Frame = +1
Query: 402 HPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQ 461
H Q P YP YP P YPQ Q QQ + Q Y QQ Y P Q
Sbjct: 103 HQQQPPVGVPPPQGYPPKDAYPP-PGYPQ-------QGYPQQGYPPQGYPQQGY---PQQ 249
Query: 462 QYPQQNFQQQPYQQR 476
YP Q + QQP Q +
Sbjct: 250 GYPPQQYAQQPQQNK 294
>CA860196 weakly similar to GP|1654183|gb|A MYOD-like DNA-binding protein
{Trichinella spiralis}, partial (7%)
Length = 398
Score = 42.7 bits (99), Expect = 0.002
Identities = 24/50 (48%), Positives = 28/50 (56%)
Frame = +1
Query: 437 PQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQQPRPPRMP 486
PQ QQ QQPY QQ QQ+ Q PQQN + P Q PQ PP++P
Sbjct: 103 PQQYGQQQHVQQPYGQQ--QQYSQQYQPQQN--RPPLQMAPQSGPPPQVP 240
Score = 35.8 bits (81), Expect = 0.20
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Frame = +1
Query: 443 QNFQQQPYQQQPYQQFPY---QQYPQQNFQQQPY--------QQRPQQPRPP 483
Q++ + P+ Q QQ Y QQY QQ QQPY Q +PQQ RPP
Sbjct: 43 QSYGRPPHSQGQGQQHNYGGPQQYGQQQHVQQPYGQQQQYSQQYQPQQNRPP 198
>TC89480 similar to GP|20260684|gb|AAM13240.1 unknown protein {Arabidopsis
thaliana}, partial (43%)
Length = 1068
Score = 42.7 bits (99), Expect = 0.002
Identities = 32/91 (35%), Positives = 42/91 (45%)
Frame = +1
Query: 398 TPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQ 457
TP S+P Q+ + Q Q P + + Q QF QQQ FQQ Q +QQ
Sbjct: 94 TPNSNPQIQSQSQSQSNQDPNL----YLQQQQQFLHQQ-----QQQPFQQSQTTQSQFQQ 246
Query: 458 FPYQQYPQQNFQQQPYQQRPQQPRPPRMPIN 488
QQ QQ QQ+ QQ+ QQ + P+ N
Sbjct: 247 QQQQQLYQQQQQQRILQQQQQQLQQPQQQQN 339
>BF521580 homologue to GP|20197423|gb|A unknown protein {Arabidopsis
thaliana}, partial (42%)
Length = 334
Score = 42.4 bits (98), Expect = 0.002
Identities = 25/61 (40%), Positives = 29/61 (46%)
Frame = +1
Query: 419 IPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQ 478
I YP YP P QQ + QQ Y P Q +P Q YPQQ + Q Y Q+PQ
Sbjct: 1 IKGYPPKDAYP-------PPGYPQQGYPQQGY---PPQGYPQQGYPQQGYPPQQYAQQPQ 150
Query: 479 Q 479
Q
Sbjct: 151 Q 153
Score = 39.7 bits (91), Expect = 0.014
Identities = 26/64 (40%), Positives = 29/64 (44%)
Frame = +1
Query: 413 IPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQP 472
I YP YP P YPQ Q QQ + Q Y QQ Y P Q YP Q + QQP
Sbjct: 1 IKGYPPKDAYPP-PGYPQ-------QGYPQQGYPPQGYPQQGY---PQQGYPPQQYAQQP 147
Query: 473 YQQR 476
Q +
Sbjct: 148 QQNK 159
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.343 0.149 0.504
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,540,974
Number of Sequences: 36976
Number of extensions: 1157723
Number of successful extensions: 16366
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 6082
Number of HSP's successfully gapped in prelim test: 783
Number of HSP's that attempted gapping in prelim test: 6597
Number of HSP's gapped (non-prelim): 10155
length of query: 2359
length of database: 9,014,727
effective HSP length: 112
effective length of query: 2247
effective length of database: 4,873,415
effective search space: 10950563505
effective search space used: 10950563505
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 66 (30.0 bits)
Medicago: description of AC130806.6