Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130806.14 - phase: 0 
         (394 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AL366725                                                              155  3e-38
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin...    90  1e-18
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna...    75  3e-14
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol...    51  9e-07
TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finge...    50  2e-06
TC81207 similar to GP|21322752|dbj|BAB78536. cold shock protein-...    46  3e-05
TC78961 similar to GP|18252179|gb|AAL61922.1 unknown protein {Ar...    46  3e-05
TC82733 similar to GP|10177404|dbj|BAB10535. gene_id:K24M7.12~pi...    45  5e-05
TC89725 similar to PIR|T05494|T05494 glycine-rich protein T19K4....    35  0.038
TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci...    33  0.25
BG645355 similar to PIR|G96590|G965 hypothetical protein T24C10....    32  0.43
TC84481 similar to GP|11875626|gb|AAG40731.1 XRN4 {Arabidopsis t...    31  0.95
TC80793 similar to SP|Q9LUA9|COLE_ARATH Zinc finger protein cons...    30  1.6
TC83030 weakly similar to GP|18855061|gb|AAL79753.1 putative RNA...    30  1.6
BQ137273                                                               30  1.6
AW736233 GP|21105451|gb small nuclear ribonucleoprotein D1 {Dani...    30  1.6
TC87639 GP|9663153|emb|CAC01132.1 transport-secretion protein 2....    29  2.8
TC81162 weakly similar to PIR|T47673|T47673 hypothetical protein...    29  2.8
TC90708 weakly similar to PIR|S26703|S26703 dnaJ protein homolog...    29  3.6
TC87483 similar to GP|21955291|gb|AAK59492.2 unknown protein {Ar...    29  3.6

>AL366725 
          Length = 485

 Score =  155 bits (391), Expect = 3e-38
 Identities = 67/90 (74%), Positives = 76/90 (84%)
 Frame = +2

Query: 22  PKPYSAPAGKGKQRLNDERRPKGRDTPAEIVCFKCGEKGHKSNVCTKDEKKCFRCGQKGH 81
           PKPYSAPA KGKQR+ D+RRPK +D PAEIVCF  GEKGHKSNVC K+ KKC RC +KGH
Sbjct: 215 PKPYSAPADKGKQRMVDDRRPKKKDAPAEIVCFNYGEKGHKSNVCPKEIKKCVRCDKKGH 394

Query: 82  VLADCKRGDIVCYNCNGEGHISSQCTQPKK 111
           ++ADCKR DIVC+NCN EGHI SQC QPK+
Sbjct: 395 IVADCKRNDIVCFNCNEEGHIGSQCKQPKR 484


>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
           Ty3-Gypsy type {Oryza sativa}, partial (15%)
          Length = 716

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 44/93 (47%), Positives = 63/93 (67%)
 Frame = +2

Query: 298 DEIPDVPPEREVEFSIDLVPRTKPVSMAPYRMSASELAELKNQLEDLLDKKFVRASVFPW 357
           D +  VPPE +++F IDL+P   P+ +  YR++  +L  LK QL+DLL+K F++ S++P 
Sbjct: 2   DHLL*VPPEWKIDFGIDLLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP* 181

Query: 358 GAPVLLAKKKDGSMRLCIAYPPLNKVPIKNRYP 390
           G  VL  KKKDG +R+ I YP LN V IK +YP
Sbjct: 182 GVVVLFLKKKDGFLRMSIDYPQLNNVNIKIKYP 280


>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
           alternata}, partial (21%)
          Length = 1540

 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 47/110 (42%), Positives = 63/110 (56%), Gaps = 7/110 (6%)
 Frame = +1

Query: 288 VVNEFPEVFSDEIP-DVPPEREV-EFSIDLVP----RTKPVSMAP-YRMSASELAELKNQ 340
           V+ EFP++F+ E    VP  R + + +I L+P       P+   P Y MS  EL  LK  
Sbjct: 343 VLEEFPDLFNPEKAYQVPASRGLLDHAIPLIPDKDGNDPPLPWGPLYGMSRQELLVLKKT 522

Query: 341 LEDLLDKKFVRASVFPWGAPVLLAKKKDGSMRLCIAYPPLNKVPIKNRYP 390
           LEDLLDK F++AS    GAPVL  +K  G +R C+ Y  LN +  K+RYP
Sbjct: 523 LEDLLDKGFIKASGSAAGAPVLFVRKPGGGIRFCVDYRALNAITKKDRYP 672


>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 754

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
 Frame = -1

Query: 334 LAELKNQLEDLLD-------KKFVRASVFPWGAPVLLAKKKDGSMRLCIAYPPLNKVPIK 386
           LA+  N++E   D       K+F + S+ P GA +L  +KKDG  R+CI Y   NKV  K
Sbjct: 334 LADGSNRVEKTKDLT*RFARKRFQQPSISP*GAALLFVRKKDGYFRMCIDYRQFNKVTTK 155

Query: 387 NRYP 390
           N+YP
Sbjct: 154 NKYP 143



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 27/62 (43%), Positives = 37/62 (59%)
 Frame = -2

Query: 288 VVNEFPEVFSDEIPDVPPEREVEFSIDLVPRTKPVSMAPYRMSASELAELKNQLEDLLDK 347
           V+  F  VF D  P +P ERE+ F IDL+  T+ +S  P  M  +EL +LK  L+D L+K
Sbjct: 450 VLKGFS*VFPDNFPVIPLEREIFFCIDLLLDTQLISNPP*LMDRTELKKLKI*LKDSLEK 271

Query: 348 KF 349
            F
Sbjct: 270 GF 265


>TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finger protein
           {Oryza sativa (japonica cultivar-group)}, partial (96%)
          Length = 1286

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +1

Query: 48  PAEIVCFKCGEKGHKSNVCTKDEKK------CFRCGQKGHVLADCKRGDIVCYNCNGEGH 101
           P E +C  CG+ GH++  CT  +K       C  C ++GH+  +C   +  C NC   GH
Sbjct: 580 PNEGICHTCGKAGHRARECTVPQKPPGDLRLCNNCYKQGHIAVEC-TNEKACNNCRKTGH 756

Query: 102 ISSQC 106
           ++  C
Sbjct: 757 LARDC 771



 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 25/72 (34%), Positives = 38/72 (52%)
 Frame = +1

Query: 52  VCFKCGEKGHKSNVCTKDEKKCFRCGQKGHVLADCKRGDIVCYNCNGEGHISSQCTQPKK 111
           +C  C ++GH +  CT +EK C  C + GH+  DC   D +C  CN  GH++ QC +   
Sbjct: 670 LCNNCYKQGHIAVECT-NEKACNNCRKTGHLARDCPN-DPICNLCNISGHVARQCPKSNV 843

Query: 112 VRTGGKVFALAG 123
           +   G   +L G
Sbjct: 844 IGDRGGGGSLRG 879



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
 Frame = +1

Query: 52  VCFKCGEKGHKSNVCTKDEKKCFRCGQKGHVLADCK-----RGDI-VCYNCNGEGHISSQ 105
           +C+ C E GH ++ C  +E  C  CG+ GH   +C       GD+ +C NC  +GHI+ +
Sbjct: 535 LCWNCKEPGHMASSCP-NEGICHTCGKAGHRARECTVPQKPPGDLRLCNNCYKQGHIAVE 711

Query: 106 CTQPKKVRTGGKVFALA 122
           CT  K      K   LA
Sbjct: 712 CTNEKACNNCRKTGHLA 762



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 23/85 (27%)
 Frame = +1

Query: 45  RDTPAEIVCFKCGEKGHKSNVCTKD----------------------EKKCFRCGQKGHV 82
           RD P + +C  C   GH +  C K                       +  C  C Q GH+
Sbjct: 763 RDCPNDPICNLCNISGHVARQCPKSNVIGDRGGGGSLRGGYRDGGFRDVVCRSCQQFGHM 942

Query: 83  LADCKRGDI-VCYNCNGEGHISSQC 106
             DC  G + +C NC G GH + +C
Sbjct: 943 SRDCMGGPLMICQNCGGRGHQAYEC 1017



 Score = 35.8 bits (81), Expect = 0.029
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 73  CFRCGQKGHVLADCKRGDIVCYNCNGEGHISSQCT 107
           C  C + GH + +C     VC+NC+  GHI+S+C+
Sbjct: 424 CKNCKRPGHYVRECPNV-AVCHNCSLPGHIASECS 525



 Score = 32.0 bits (71), Expect = 0.43
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 50  EIVCFKCGEKGHKSNVCTKDEKK-CFRCGQKGHVLADCKRGDIV 92
           ++VC  C + GH S  C       C  CG +GH   +C  G  V
Sbjct: 904 DVVCRSCQQFGHMSRDCMGGPLMICQNCGGRGHQAYECPSGRFV 1035


>TC81207 similar to GP|21322752|dbj|BAB78536. cold shock protein-1 {Triticum
           aestivum}, partial (39%)
          Length = 630

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 29/111 (26%), Positives = 38/111 (34%), Gaps = 31/111 (27%)
 Frame = +3

Query: 30  GKGKQRLNDERRPKGRDTPAEIVCFKCGEKGHKSNVCTKDEKK----------------- 72
           G G+     ERR  G        C+ CG+ GH +  C + ++                  
Sbjct: 300 GGGRGFRGGERRNGGGG------CYTCGDTGHIARDCDRSDRNDRNDRSGGGGGGDRDRA 461

Query: 73  CFRCGQKGHVLADCKRGD--------------IVCYNCNGEGHISSQCTQP 109
           C+ CG   H   DC RG                 CY C G GHI+  C  P
Sbjct: 462 CYTCGSFEHFARDCMRGGGNNNNGGGGYGGGGTSCYRCGGVGHIARDCATP 614


>TC78961 similar to GP|18252179|gb|AAL61922.1 unknown protein {Arabidopsis
           thaliana}, partial (71%)
          Length = 974

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 31  KGKQRLNDERRPKGRDTP-AEIVCFKCGEKGHKSNVCTKDE--KKCFRCGQKGHVLADCK 87
           +G +   D R   GR  P     CF CG  GH +  C   +   KC+RCG++GH+  +CK
Sbjct: 290 RGSRDSRDSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCK 469



 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 21/44 (47%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
 Frame = +2

Query: 72  KCFRCGQKGHVLADCKRGD--IVCYNCNGEGHISSQC-TQPKKV 112
           +CF CG  GH   DCK GD    CY C   GHI   C   PKK+
Sbjct: 356 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKL 487



 Score = 28.9 bits (63), Expect = 3.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 53  CFKCGEKGHKSNVCTKDEKKCFR 75
           C++CGE+GH    C    KK  R
Sbjct: 425 CYRCGERGHIEKNCKNSPKKLSR 493


>TC82733 similar to GP|10177404|dbj|BAB10535.
           gene_id:K24M7.12~pir||S42136~similar to unknown protein
           {Arabidopsis thaliana}, partial (57%)
          Length = 710

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 33/123 (26%), Positives = 50/123 (39%), Gaps = 22/123 (17%)
 Frame = +3

Query: 20  VGPKPYSAPAGKGKQRLNDER-----RPKGRDTPAEIV-------CFKCGEKGHKSNVCT 67
           V P P + P+ K K +   ++     +P+    P  +        CF C    H +  CT
Sbjct: 147 VDPTPPNDPSKKKKNKFKRKKPDSNSKPRTGKRPLRVPGMKPGDSCFICKGLDHIAKFCT 326

Query: 68  KD-----EKKCFRCGQKGHVLADCKRGDI-----VCYNCNGEGHISSQCTQPKKVRTGGK 117
           +       K C RC ++GH   +C  G         YNC   GH  + C  P  ++ GG 
Sbjct: 327 QKAEWEKNKICLRCRRRGHRAQNCPDGGSKEDFKY*YNCGDNGHSLANCPHP--LQEGGT 500

Query: 118 VFA 120
           +FA
Sbjct: 501 MFA 509



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
 Frame = +3

Query: 52  VCFKCGEKGHKSNVCT-----KDEKKCFRCGQKGHVLADC----KRGDIV---CYNCNGE 99
           +C +C  +GH++  C      +D K  + CG  GH LA+C    + G  +   C+ C  +
Sbjct: 354 ICLRCRRRGHRAQNCPDGGSKEDFKY*YNCGDNGHSLANCPHPLQEGGTMFAQCFVCKEQ 533

Query: 100 GHISSQC 106
           GH+S  C
Sbjct: 534 GHLSKNC 554



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
 Frame = +3

Query: 54  FKCGEKGHKSNVCTKDEKK-------CFRCGQKGHVLADCKRGDIVCYNCNGEGHISSQC 106
           + CG+ GH    C    ++       CF C ++GH+  +C +     Y   G   I   C
Sbjct: 435 YNCGDNGHSLANCPHPLQEGGTMFAQCFVCKEQGHLSKNCPKNAHGIYPKGGCCKICGXC 614


>TC89725 similar to PIR|T05494|T05494 glycine-rich protein T19K4.150 -
          Arabidopsis thaliana, partial (17%)
          Length = 378

 Score = 35.4 bits (80), Expect = 0.038
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 20/57 (35%)
 Frame = +1

Query: 53 CFKCGEKGHKSNVCTK--------------------DEKKCFRCGQKGHVLADCKRG 89
          C+ CGE GH +  CT                         C+ CG+ GH   DC  G
Sbjct: 16 CYNCGESGHMARECTSGGGGGGGRYGGGGGGGGGGGGGGSCYSCGESGHFARDCPTG 186



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 93  CYNCNGEGHISSQCT 107
           CYNC   GH++ +CT
Sbjct: 16  CYNCGESGHMARECT 60


>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
          arietinum}, partial (8%)
          Length = 516

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 23/53 (43%), Positives = 26/53 (48%), Gaps = 5/53 (9%)
 Frame = +2

Query: 1  MAGRNDAAIAAALEAVAQAVGPKPYSAPAGKGKQRL-----NDERRPKGRDTP 48
          M G +DAA+ AALEAVAQAV   P       G + L     N     KGR  P
Sbjct: 2  MTGSSDAALVAALEAVAQAVQQLPKVDTGSDGTRMLETFLRNHPPTFKGRYAP 160


>BG645355 similar to PIR|G96590|G965 hypothetical protein T24C10.5 [imported]
           - Arabidopsis thaliana, partial (5%)
          Length = 627

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 13/48 (27%)
 Frame = -1

Query: 72  KCFRCGQKGHVLADCKRGDIV-------------CYNCNGEGHISSQC 106
           KC++C Q GH  ++C                   CY CN  GH ++ C
Sbjct: 504 KCYKCQQPGHWASNCPSMSAANRVSGGSGGASGNCYKCNQPGHWANNC 361


>TC84481 similar to GP|11875626|gb|AAG40731.1 XRN4 {Arabidopsis thaliana},
           partial (23%)
          Length = 727

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 70  EKKCFRCGQKGHVLADCK 87
           ++KC+ CGQ GH+ A+C+
Sbjct: 200 QEKCYMCGQVGHLAAECR 253


>TC80793 similar to SP|Q9LUA9|COLE_ARATH Zinc finger protein constans-like
           14. [Mouse-ear cress] {Arabidopsis thaliana}, partial
           (27%)
          Length = 937

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/66 (22%), Positives = 28/66 (41%), Gaps = 3/66 (4%)
 Frame = +1

Query: 49  AEIVCFKCGEKGHKSNVCTKDEKK---CFRCGQKGHVLADCKRGDIVCYNCNGEGHISSQ 105
           A  +C  C    H +N   +   +   C RC  +  ++   +    +C NC+  GH +S 
Sbjct: 298 AACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKVSLCQNCDWLGHGNST 477

Query: 106 CTQPKK 111
            +  K+
Sbjct: 478 SSNHKR 495


>TC83030 weakly similar to GP|18855061|gb|AAL79753.1 putative RNA helicase
           {Oryza sativa}, partial (7%)
          Length = 624

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +1

Query: 73  CFRCGQKGHVLADC--KRGD 90
           CF CG+ GH  +DC  KRGD
Sbjct: 166 CFTCGESGHRASDCPNKRGD 225


>BQ137273 
          Length = 699

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 154 HCFIALECAYKLGLIVS-DMKGEMVVETPAKGSVTTSLVCL 193
           HC  +  C++ LG   +  M+ +++ ETPA+  VT  ++CL
Sbjct: 388 HCVPSSMCSFMLGYACNCTMRIKLLQETPAQNCVTYGMLCL 510


>AW736233 GP|21105451|gb small nuclear ribonucleoprotein D1 {Danio rerio},
           partial (14%)
          Length = 510

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/62 (30%), Positives = 27/62 (42%)
 Frame = +1

Query: 17  AQAVGPKPYSAPAGKGKQRLNDERRPKGRDTPAEIVCFKCGEKGHKSNVCTKDEKKCFRC 76
           +Q VG + Y+A  G+G+ R     R +GR     + C  C    H +  C      CFR 
Sbjct: 196 SQEVGTEYYNAGRGRGRGR--GRGRGRGRSNSNRLQCQICARNNHDAARC------CFRY 351

Query: 77  GQ 78
            Q
Sbjct: 352 DQ 357


>TC87639 GP|9663153|emb|CAC01132.1 transport-secretion protein 2.2 (TTS-2.2)
           {Homo sapiens}, partial (2%)
          Length = 1522

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/29 (44%), Positives = 17/29 (57%), Gaps = 3/29 (10%)
 Frame = -1

Query: 93  CYNCNGEGHISSQCTQ---PKKVRTGGKV 118
           CY+C+  GHI+  CT     KK + G KV
Sbjct: 316 CYSCHERGHIARNCTNTSAAKKKKKGPKV 230


>TC81162 weakly similar to PIR|T47673|T47673 hypothetical protein T26I12.220
           - Arabidopsis thaliana, partial (9%)
          Length = 756

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 83  LADCKRGDIVCYNCNGEGHISSQCTQPK 110
           +A  KR + +CY C  +GH  S+C  P+
Sbjct: 392 VASGKRKNRMCYGCRQKGHNLSECPNPQ 475


>TC90708 weakly similar to PIR|S26703|S26703 dnaJ protein homolog YDJ1 -
           yeast (Saccharomyces cerevisiae), partial (43%)
          Length = 1098

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = +2

Query: 51  IVCFKCGEKGHKSNVCTKDEKKCFRCGQKGHVLADCKRGDI------VCYNCNGEGHI 102
           I+C KC  +G K        K+C  C   G      + G +      VC +CNGEG +
Sbjct: 704 IICSKCEGRGGKEGAV----KRCTGCDGHGMKTMMRQMGPMIQRFQTVCPDCNGEGEM 865


>TC87483 similar to GP|21955291|gb|AAK59492.2 unknown protein {Arabidopsis
           thaliana}, partial (97%)
          Length = 679

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = +3

Query: 72  KCFRCGQKGHVLADCKR---GDIVCYNCNGEGHISSQCTQPKKVRTGGKVFALAGMQTTN 128
           +C  C   G V   C R   GDI C  C+G G +   C+      TG  + A   ++ TN
Sbjct: 246 RCPSCNGTGRVPCLCSRWSDGDIGCSTCSGSGRMG--CSSCGGSGTGRPLPARITIRPTN 419

Query: 129 EDRLIRGT--CFFNSIPLIAII 148
               + G+    F+S   +A++
Sbjct: 420 RPS*LTGSV*SLFSSQLCLALV 485


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,147,480
Number of Sequences: 36976
Number of extensions: 202063
Number of successful extensions: 1053
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of query: 394
length of database: 9,014,727
effective HSP length: 98
effective length of query: 296
effective length of database: 5,391,079
effective search space: 1595759384
effective search space used: 1595759384
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)


Medicago: description of AC130806.14