TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC129092.1 - phase: 0 
         (391 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF636036 similar to GP|6069471|dbj S-locus protein 3 {Brassica r...   288  2e-78
AL385757 weakly similar to GP|17979018|gb| GTP cyclohydrolase I ...    30  1.6
TC79965 similar to GP|7549635|gb|AAF63820.1| hypothetical protei...    28  4.7
TC76356 weakly similar to GP|22135896|gb|AAM91530.1 unknown prot...    28  6.1
TC85780 similar to SP|P49608|ACOC_CUCMA Aconitate hydratase  cyt...    28  7.9

>BF636036 similar to GP|6069471|dbj S-locus protein 3 {Brassica rapa},
           partial (50%)
          Length = 674

 Score =  288 bits (738), Expect = 2e-78
 Identities = 139/141 (98%), Positives = 140/141 (98%)
 Frame = -2

Query: 251 QSLEAFLQWKSLVSLLLGCTEAPFHTRTRLFTKFIKVIYYQLKYGLQKDRKDNTGPLLLD 310
           +SLEAFLQ KSLVSLLLGCTEAPFHTRTRLFTKFIKVIYYQLKYGLQKDRKDNTGPLLLD
Sbjct: 664 RSLEAFLQXKSLVSLLLGCTEAPFHTRTRLFTKFIKVIYYQLKYGLQKDRKDNTGPLLLD 485

Query: 311 DSWFSTDSFLHHHCKEFFSLVLDGSVIDGDLLKWTRKFKKLLESNLGWEFQQNNAVDGLY 370
           DSWFSTDSFLHHHCKEFFSLVLDGSVIDGDLLKWTRKFKKLLESNLGWEFQQNNAVDGLY
Sbjct: 484 DSWFSTDSFLHHHCKEFFSLVLDGSVIDGDLLKWTRKFKKLLESNLGWEFQQNNAVDGLY 305

Query: 371 FDENDEFAPVVEMLDDEAHAV 391
           FDENDEFAPVVEMLDDEAHAV
Sbjct: 304 FDENDEFAPVVEMLDDEAHAV 242


>AL385757 weakly similar to GP|17979018|gb| GTP cyclohydrolase I
           {Lycopersicon esculentum}, partial (7%)
          Length = 575

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/68 (27%), Positives = 35/68 (50%), Gaps = 8/68 (11%)
 Frame = -2

Query: 34  FSVGPTFKGIKMIPPGTHFVYYSSSTRDGKEFSPMIGF---FIDAGP-----SEVIVRKW 85
           F +G T+K + + PP  H+  YS+     K  S  +GF   F++ G      +E+++ KW
Sbjct: 256 FPLGDTYK-M*LXPPNNHYSXYSTLHNRWKSVSSNLGFVRPFLELGSLRAINNELLIVKW 80

Query: 86  DQQEERLV 93
             Q + ++
Sbjct: 79  TFQLDSIL 56


>TC79965 similar to GP|7549635|gb|AAF63820.1| hypothetical protein
           {Arabidopsis thaliana}, partial (15%)
          Length = 742

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 10/29 (34%), Positives = 16/29 (54%)
 Frame = +1

Query: 312 SWFSTDSFLHHHCKEFFSLVLDGSVIDGD 340
           SW    + LH   K+   ++ DGS++D D
Sbjct: 463 SWIMLSNCLHFAVKKIVRIIADGSIVDSD 549


>TC76356 weakly similar to GP|22135896|gb|AAM91530.1 unknown protein
            {Arabidopsis thaliana}, partial (36%)
          Length = 2619

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/66 (25%), Positives = 26/66 (38%)
 Frame = +3

Query: 62   GKEFSPMIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEDERYRLAVKNMEFDRQLGPYNL 121
            G  F   +G+ +DA         W       + V +E D++Y +     +     GP NL
Sbjct: 1419 GISFVGDVGYIVDAW--------WHDGWWEGIVVQKESDDKYHVYFPGEKKMSIFGPCNL 1574

Query: 122  SHYEDW 127
             H  DW
Sbjct: 1575 RHSRDW 1592


>TC85780 similar to SP|P49608|ACOC_CUCMA Aconitate hydratase  cytoplasmic (EC
            4.2.1.3) (Citrate hydro-lyase) (Aconitase)., partial
            (97%)
          Length = 3124

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 16/37 (43%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
 Frame = +3

Query: 19   LDVPQYTLVAIDTQVFSVG--PTFKGIKMIPPGTHFV 53
            L VP   L A D+    +   P FKG+ M PPG+H V
Sbjct: 1965 LSVPSGNLYAWDSTSTYIHEPPYFKGMSMSPPGSHGV 2075


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,902,864
Number of Sequences: 36976
Number of extensions: 164343
Number of successful extensions: 753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of query: 391
length of database: 9,014,727
effective HSP length: 98
effective length of query: 293
effective length of database: 5,391,079
effective search space: 1579586147
effective search space used: 1579586147
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)