BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC129091.6 - phase: 0 /pseudo
(1077 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC93741 similar to GP|22165058|gb|AAM93675.1 putative glycine-ri... 142 5e-34
TC80073 weakly similar to GP|15293301|gb|AAK93761.1 unknown prot... 34 0.35
TC89272 similar to GP|11994729|dbj|BAB03045. gene_id:F5N5.17~pir... 32 1.7
TC77788 similar to PIR|S57948|S57948 HMGI/Y protein - garden pea... 31 2.9
TC82755 30 5.0
TC77770 weakly similar to GP|18419639|gb|AAL69386.1 unknown {Nar... 30 6.5
TC80062 weakly similar to GP|4115534|dbj|BAA36410.1 UDP-glycose:... 30 6.5
BG457088 similar to GP|23504661|emb hypothetical protein conser... 30 6.5
CA922355 similar to PIR|T47793|T47 receptor-like protein kinase ... 30 6.5
TC83037 weakly similar to PIR|T38758|T38758 60s ribosomal protei... 29 8.5
BG587122 29 8.5
>TC93741 similar to GP|22165058|gb|AAM93675.1 putative glycine-rich protein
{Oryza sativa (japonica cultivar-group)}, partial (20%)
Length = 877
Score = 142 bits (359), Expect = 5e-34
Identities = 69/105 (65%), Positives = 83/105 (78%)
Frame = +2
Query: 733 GGENGTTISGGSTQMNAWVQEAIAKISSTSDGVSNLTPTSPIGGPSSLMPISINTETFPG 792
GG+NG+T S G+ Q+ WVQ AIAKIS+T++G SN TP +PI GPSS MPISINT TFPG
Sbjct: 566 GGQNGSTSSMGTVQLQTWVQGAIAKISNTTEGGSNPTP-NPISGPSSFMPISINTGTFPG 742
Query: 793 TPAVRLIGDCHFLQRLCQLLFFCFFFKRSQLVLYMNGLRRTAETS 837
TPAVRLIGDC FL RLCQLL FCFFF+R+Q+ YM RT +++
Sbjct: 743 TPAVRLIGDCQFLHRLCQLLLFCFFFRRTQIPRYMGAANRTNDSN 877
Score = 67.0 bits (162), Expect = 4e-11
Identities = 33/44 (75%), Positives = 35/44 (79%)
Frame = +2
Query: 551 TRLRCYAKFCRTLASQAATAGNVSNQNMVASPAQNSTTPETSQG 594
TRLR YA FCRTLAS A TAG SN+NMVASP Q+S TP TSQG
Sbjct: 437 TRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPATSQG 568
>TC80073 weakly similar to GP|15293301|gb|AAK93761.1 unknown protein
{Arabidopsis thaliana}, partial (76%)
Length = 960
Score = 33.9 bits (76), Expect = 0.35
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 294 LSAPNWSGFAPLYHFTARQFQNFQH 318
++ PNWS F PL+H + F NF H
Sbjct: 579 MAGPNWSSFLPLFHNCSSCFHNFTH 505
>TC89272 similar to GP|11994729|dbj|BAB03045.
gene_id:F5N5.17~pir||G71408~similar to unknown protein
{Arabidopsis thaliana}, partial (57%)
Length = 1366
Score = 31.6 bits (70), Expect = 1.7
Identities = 25/102 (24%), Positives = 38/102 (36%)
Frame = +3
Query: 161 WRQDTAVVTKWLSGYRWLSSKSSAPANLKSIFEEKFISQQSQTSGSVQLHWSQWPPTQNA 220
WR+ V KWLS Y ++ S N K I +E +++ S V + W PP
Sbjct: 951 WRRVEYVKAKWLSSYTRMNVNSQ---NQKKILKENCVTESSGEEEKVVIEWK--PPELK- 1112
Query: 221 TLHKWFCTSKGLLACGPSGIITGDAIITDNGTLLVAGVPAVN 262
P G +TG ++T + P +N
Sbjct: 1113 ----------------PKGSLTGVKVVTGLAVVFEDDNP*IN 1190
>TC77788 similar to PIR|S57948|S57948 HMGI/Y protein - garden pea, partial
(87%)
Length = 981
Score = 30.8 bits (68), Expect = 2.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 1024 LEGVWYKCIRCMRQTSAFTSPASANIPNQNERESWWVSRW 1063
L G+W +CIR +R+T+++ P + SWW S+W
Sbjct: 491 LRGLW-RCIRVLRRTTSW--------PWWGQNSSWWWSQW 399
>TC82755
Length = 661
Score = 30.0 bits (66), Expect = 5.0
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 424 LFVTVVNFNDMLHI-LFDGEFLKQFSATTFLNTVLSAWFGVFNFCYTYLYL 473
LF ++ D+L + LF F+ F+ FL ++WFG+++ Y Y+Y+
Sbjct: 479 LFCVLIISKDVLFLYLFSVLFIYLFA---FLRKGFTSWFGIYSNLYIYVYI 622
>TC77770 weakly similar to GP|18419639|gb|AAL69386.1 unknown {Narcissus
pseudonarcissus}, partial (75%)
Length = 916
Score = 29.6 bits (65), Expect = 6.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 805 LQRLCQLL----FFCFFFKRSQLVLYMNGLRRTAETSLV 839
L RLC LL F CF R +L +NG+ + + +LV
Sbjct: 533 LHRLCFLLH*RKFLCFSQSRGSFILVLNGIMKISSAALV 649
>TC80062 weakly similar to GP|4115534|dbj|BAA36410.1 UDP-glycose:flavonoid
glycosyltransferase {Vigna mungo}, partial (42%)
Length = 1071
Score = 29.6 bits (65), Expect = 6.5
Identities = 16/70 (22%), Positives = 32/70 (44%)
Frame = -3
Query: 429 VNFNDMLHILFDGEFLKQFSATTFLNTVLSAWFGVFNFCYTYLYLYSHW*NNLYCYMYNT 488
+ +N H+LF F+ +++ ++ + Y Y+Y+Y +Y Y+Y
Sbjct: 949 IRYNTF*HVLF-----------IFVTNIININLNIYIYIYIYIYIY------IYIYIYIY 821
Query: 489 PYR*IYLPTY 498
Y IY+ T+
Sbjct: 820 IYIYIYIHTH 791
>BG457088 similar to GP|23504661|emb hypothetical protein conserved
{Plasmodium falciparum 3D7}, partial (2%)
Length = 673
Score = 29.6 bits (65), Expect = 6.5
Identities = 12/41 (29%), Positives = 21/41 (50%)
Frame = +3
Query: 434 MLHILFDGEFLKQFSATTFLNTVLSAWFGVFNFCYTYLYLY 474
++H LFD FL T+L + ++ + Y Y+Y+Y
Sbjct: 27 LIHFLFD*SFLSIIKNNIKFFTLLRIYIYIYIYIYIYIYMY 149
>CA922355 similar to PIR|T47793|T47 receptor-like protein kinase - Arabidopsis
thaliana, partial (21%)
Length = 708
Score = 29.6 bits (65), Expect = 6.5
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = -3
Query: 935 LELLPPAEVWHRLNMFGGPCTDPDDSPRPVRSNPLDSRSLESNNIDYGTNGLWPRKHRMI 994
LE+ PP R + C DPD RP S + R LE++ + + R++R
Sbjct: 544 LEVKPPTRALKRALLVAFRCVDPDSEKRPKMSQVV--RMLEADEYPFRED----RRYRK- 386
Query: 995 ERDAAFALNTSLDIMGSRRDVITTS 1019
+ S+DI+ S +D+ + S
Sbjct: 385 ------SRTASIDIVESLKDISSPS 329
>TC83037 weakly similar to PIR|T38758|T38758 60s ribosomal protein L5 -
fission yeast (Schizosaccharomyces pombe), partial (49%)
Length = 844
Score = 29.3 bits (64), Expect = 8.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 177 WLSSKSSAPANLKSIFEEKFISQQSQTSGSVQLHWSQWPP 216
++ S+SSAP E F+S S +S ++++ + WPP
Sbjct: 426 YIFSRSSAPIPASINLENCFLSLSSSSS*RIRIYSATWPP 307
>BG587122
Length = 752
Score = 29.3 bits (64), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (54%)
Frame = +3
Query: 47 SMRRNFSAVAWCAKLNAIACATETCARIPRSSVNPPFWIP 86
S++R + C+ + A A+ +C R+P S + P FW P
Sbjct: 171 SLKRLLQLLGSCSSIRVPAPASGSCLRLPGSCLWPWFWGP 290
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.340 0.148 0.510
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,346,808
Number of Sequences: 36976
Number of extensions: 653867
Number of successful extensions: 6279
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3444
Number of HSP's successfully gapped in prelim test: 300
Number of HSP's that attempted gapping in prelim test: 2550
Number of HSP's gapped (non-prelim): 4072
length of query: 1077
length of database: 9,014,727
effective HSP length: 106
effective length of query: 971
effective length of database: 5,095,271
effective search space: 4947508141
effective search space used: 4947508141
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC129091.6