TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC129091.5 - phase: 0 /pseudo
         (980 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93741 similar to GP|22165058|gb|AAM93675.1 putative glycine-ri...   308  5e-84
TC78589 1-deoxy-D-xylulose 5-phosphate synthase 2 [Medicago trun...    32  1.2
TC87640 similar to PIR|C96618|C96618 probable squalene monooxyge...    31  2.7
TC79326 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_9...    29  7.8

>TC93741 similar to GP|22165058|gb|AAM93675.1 putative glycine-rich protein
           {Oryza sativa (japonica cultivar-group)}, partial (20%)
          Length = 877

 Score =  308 bits (790), Expect = 5e-84
 Identities = 173/293 (59%), Positives = 193/293 (65%), Gaps = 48/293 (16%)
 Frame = +2

Query: 513 SLLVGVDWWDVVGCTQRAAEEGIVSVNGVIAVLDADFHSLPTAQHRQQYCLGLDMIKCRL 572
           SLLVGVDWWD VGCTQ AAE+GIVS+N VIAVLDADFHSLP+ QHRQQY   LD IKCRL
Sbjct: 2   SLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSVQHRQQYGPSLDRIKCRL 181

Query: 573 LVGSNAQEVRATVLDMQARVLLDMLGKGIESALINPSALLPDPWQASEEILSNFDMEEMA 632
           L GSNAQEVRA VLDMQAR+LLDMLG+GIESALI+P+  +P+ WQAS E LSN D E MA
Sbjct: 182 LEGSNAQEVRAMVLDMQARLLLDMLGRGIESALIDPTQFVPELWQASGETLSNIDSETMA 361

Query: 633 VEPELTPCIQAYVDSVIDLASHL-ITRLRHYAKIFRTLANQAVTVASGS----------- 680
           VEP L PC+QAYV      +  L ITRLR YA   RTLA+ AVT  +GS           
Sbjct: 362 VEPALVPCVQAYV*CNS*FSFTLCITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQS 541

Query: 681 ------------------------------------TSGGVPNLTLNPSISGPSSLMLIS 704
                                               T+ G  N T NP ISGPSS M IS
Sbjct: 542 SATPATSQGGQNGSTSSMGTVQLQTWVQGAIAKISNTTEGGSNPTPNP-ISGPSSFMPIS 718

Query: 705 INTGTFPGTPAVRLIGDCHFLHRLCQLLFFCFFFKRSQLARYKSGLRRTAETS 757
           INTGTFPGTPAVRLIGDC FLHRLCQLL FCFFF+R+Q+ RY     RT +++
Sbjct: 719 INTGTFPGTPAVRLIGDCQFLHRLCQLLLFCFFFRRTQIPRYMGAANRTNDSN 877


>TC78589 1-deoxy-D-xylulose 5-phosphate synthase 2 [Medicago truncatula]
          Length = 2760

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
 Frame = -3

Query: 453  SISVPAFSATSCCSASVWHDTSKGEAMLKIIRVLPPPFPIGQEKATSSTWEHAISERFWF 512
            S + PA + T+CCSA        G    K  R +PPP          S     I+E   +
Sbjct: 1552 SAANPAANVTACCSAMPTSKHRSGNLFWK*FRPVPPPIAA*IATILLSISASFINESAKY 1373

Query: 513  SLLV-----GVDWWDVVG 525
             +       G++WW V G
Sbjct: 1372 CVYASVEGFGLNWWPVFG 1319


>TC87640 similar to PIR|C96618|C96618 probable squalene monooxygenase
           F9K23.3 [imported] - Arabidopsis thaliana, partial (55%)
          Length = 1288

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 3   PMKESEAEAEAAATVNDPMMEEEEVEAGTVFDISLEQSPSTSL--HKITVHESMRSNFSA 60
           P+++ +++    +  N   ++    +A T+  + LEQ   TSL     T+      N S 
Sbjct: 637 PLEKFDSDVSGRSFHNGRFIQRMREKASTIPTVKLEQGTVTSLLEENGTIKGVNYKNKSG 816

Query: 61  VAWCAKLNV-IACATETCVNGIPRSSVNPWFWIPIHIV 97
             + AK  + I C  + C + + RS  NP   +P H V
Sbjct: 817 QEFTAKAPLTIVC--DGCFSNLRRSLCNPKVEVPSHFV 924


>TC79326 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_90
           {Arabidopsis thaliana}, partial (94%)
          Length = 1883

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
 Frame = -3

Query: 72  CATETCVN----------GIPRSSVNPWFWIPIHIVIPERPTEIAAFNVVADSSLDS 118
           C +E C N          G  R S+NP  WIP     P+ P  +A     A SS  S
Sbjct: 318 CTSEGCSNPESTIARRSSGFRRKSLNPELWIPT*PFFPDSPLTLAPTESGAFSSSSS 148


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.327    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,924,483
Number of Sequences: 36976
Number of extensions: 511520
Number of successful extensions: 3355
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2480
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 2672
length of query: 980
length of database: 9,014,727
effective HSP length: 105
effective length of query: 875
effective length of database: 5,132,247
effective search space: 4490716125
effective search space used: 4490716125
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)