BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC128660.9 + phase: 0 /pseudo
(58 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC80726 similar to GP|18491975|emb|CAD22399. unnamed protein pro... 96 3e-21
TC89002 weakly similar to GP|12325088|gb|AAG52497.1 putative cho... 40 1e-04
TC78962 similar to PIR|S38958|S38958 chorismate mutase (EC 5.4.9... 28 0.013
AJ504367 weakly similar to GP|4760704|dbj peroxidase 3 {Scutella... 27 2.1
TC82230 similar to GP|9758915|dbj|BAB09452.1 contains similarity... 27 2.1
TC90567 similar to GP|16604623|gb|AAL24104.1 unknown protein {Ar... 27 2.1
TC80815 MtN20 26 2.7
TC93614 similar to GP|5912543|emb|CAB56195.1 Knolle {Capsicum an... 25 4.6
TC79742 similar to GP|10177241|dbj|BAB10615. gb|AAC98455.1~gene_... 25 4.6
BQ144999 homologue to GP|14318171|gb| fructose-1 6-bisphosphatas... 25 6.1
TC84105 homologue to PIR|C84507|C84507 hypothetical protein At2g... 25 7.9
>TC80726 similar to GP|18491975|emb|CAD22399. unnamed protein product
{synthetic construct}, partial (41%)
Length = 872
Score = 95.9 bits (237), Expect = 3e-21
Identities = 45/58 (77%), Positives = 53/58 (90%)
Frame = +1
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMASTFYEKWVIPL 58
MKLLTFKSVEEMVKKR++KK TLF QDI+ +++DD+KGKQKFDPS+AS YEKWVIPL
Sbjct: 595 MKLLTFKSVEEMVKKRVEKKATLFGQDISLNSSDDSKGKQKFDPSVASKLYEKWVIPL 768
>TC89002 weakly similar to GP|12325088|gb|AAG52497.1 putative chorismate
mutase; 16810-15349 {Arabidopsis thaliana}, partial
(42%)
Length = 1028
Score = 40.4 bits (93), Expect = 1e-04
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGK-QKFDPSMASTFYEKWVIPL 58
++LLT++SVEE V+KR++ K F Q++ + D + + Y KW++PL
Sbjct: 556 LELLTYESVEESVQKRVEMKARTFSQEVKINEAGDVADPVYRIKSGLIGNLYGKWIMPL 732
>TC78962 similar to PIR|S38958|S38958 chorismate mutase (EC 5.4.99.5)
precursor - Arabidopsis thaliana, partial (75%)
Length = 1318
Score = 28.5 bits (62), Expect(2) = 0.013
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNND 34
M+LLT+ VEE +K+R+ K + Q++ + D
Sbjct: 917 MELLTYPEVEESIKRRVAVKAKTYGQEVAVNLKD 1018
Score = 24.3 bits (51), Expect(2) = 0.013
Identities = 7/18 (38%), Positives = 12/18 (65%)
Frame = +3
Query: 41 KFDPSMASTFYEKWVIPL 58
K +PS+ + Y W++PL
Sbjct: 1041 KINPSLVADLYSDWIMPL 1094
>AJ504367 weakly similar to GP|4760704|dbj peroxidase 3 {Scutellaria
baicalensis}, partial (38%)
Length = 514
Score = 26.6 bits (57), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (54%)
Frame = -2
Query: 14 KKRLKKKTTLFRQDINFDNNDDNKGKQKF 42
++ +K KT L N DDNKGK KF
Sbjct: 123 RQNMKTKTCLLETHSMS*NYDDNKGKLKF 37
>TC82230 similar to GP|9758915|dbj|BAB09452.1 contains similarity to ABC
transporter~gene_id:MXI22.4 {Arabidopsis thaliana},
partial (69%)
Length = 1166
Score = 26.6 bits (57), Expect = 2.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 37 KGKQKFDPSMASTFYEKWVIP 57
+ KFD S+ S +EKWV+P
Sbjct: 1056 ENSSKFDSSIWSNDFEKWVLP 1118
>TC90567 similar to GP|16604623|gb|AAL24104.1 unknown protein {Arabidopsis
thaliana}, partial (21%)
Length = 1058
Score = 26.6 bits (57), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +3
Query: 17 LKKKTTLFRQDINFDNNDDNKGKQKFDPSMAS 48
L+K TL +N D++DD + K + DP A+
Sbjct: 291 LRKSITLNDISMNQDDDDDKETKYRLDPKYAN 386
>TC80815 MtN20
Length = 732
Score = 26.2 bits (56), Expect = 2.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 8 SVEEMVKKRLKKKTTLFRQDINFDNND 34
S+ ++ ++RLK TTL + N D+ D
Sbjct: 529 SINQLQERRLKSNTTLSIESFNLDSKD 449
>TC93614 similar to GP|5912543|emb|CAB56195.1 Knolle {Capsicum annuum},
partial (43%)
Length = 633
Score = 25.4 bits (54), Expect = 4.6
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -3
Query: 29 NFDNNDDNKGKQKFDPS 45
N +NND+N+ KQ+++P+
Sbjct: 397 NGNNNDENQNKQEYNPN 347
>TC79742 similar to GP|10177241|dbj|BAB10615.
gb|AAC98455.1~gene_id:MRN17.17~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (32%)
Length = 1063
Score = 25.4 bits (54), Expect = 4.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 20 KTTLFRQDINFDNNDDNKGKQKFDPSMASTFYE 52
K T+ Q + + DD+K QKF + S++++
Sbjct: 971 KQTVVSQHVQLSDKDDHK*HQKFVTQLNSSYFQ 873
>BQ144999 homologue to GP|14318171|gb| fructose-1 6-bisphosphatase {Pisum
sativum}, partial (22%)
Length = 625
Score = 25.0 bits (53), Expect = 6.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 6 FKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQ 40
+ S+ E K L++ TLF +D + DNN++N KQ
Sbjct: 209 YVSMPETKGKTLEEMETLFVED-DDDNNNNNNEKQ 108
>TC84105 homologue to PIR|C84507|C84507 hypothetical protein At2g13370
[imported] - Arabidopsis thaliana, partial (15%)
Length = 834
Score = 24.6 bits (52), Expect = 7.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 2 KLLTFKSVEEMVKKRLKKKTTLFR---QDINFDNNDDNKGKQKFDPSMASTFYEK 53
+ +T KSVEE + +R KKK L Q +N + + K +K +F++K
Sbjct: 352 RFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAKK-----GGSFFDK 501
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,569,000
Number of Sequences: 36976
Number of extensions: 13320
Number of successful extensions: 92
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of query: 58
length of database: 9,014,727
effective HSP length: 34
effective length of query: 24
effective length of database: 7,757,543
effective search space: 186181032
effective search space used: 186181032
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC128660.9