TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC127429.13 - phase: 0 /pseudo
         (1603 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF634898 similar to GP|16024936|gb HUA enhancer 2 {Arabidopsis t...    82  2e-15
TC85089 similar to PIR|E96621|E96621 hypothetical protein F23H11...    80  5e-15
AW694815 similar to GP|22091415|gb putative RNA helicase {Arabid...    70  5e-12
TC81991 similar to PIR|D96545|D96545 probable DNA polymerase A f...    36  0.11
TC77964 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_9...    36  0.14
BI271075 homologue to GP|8843865|dbj DEAD-box protein abstrakt {...    33  0.89
TC92962 weakly similar to GP|8131846|gb|AAF73104.1| whitefly-ind...    33  1.2
TC88191 similar to PIR|D96545|D96545 probable DNA polymerase A f...    33  1.2
TC90389 similar to GP|21592590|gb|AAM64539.1 unknown {Arabidopsi...    31  4.4
TC87779 GP|7208771|emb|CAB76908.1 putative Ruv DNA-helicase {Cic...    31  4.4
CB065351 homologue to GP|12002056|gb| DNA polymerase I {Salmonel...    30  5.8
TC89731 similar to GP|15809986|gb|AAL06920.1 AT3g19540/T31J18_4 ...    30  5.8
BG645095 similar to GP|9294413|dbj kinase-like protein {Arabidop...    30  7.5
TC84995 similar to PIR|E86342|E86342 hypothetical protein AAD305...    30  7.5
TC91326 homologue to GP|18252903|gb|AAL62378.1 putative protein ...    30  7.5
BE249065                                                               30  9.8
TC83919 similar to GP|17065412|gb|AAL32860.1 Unknown protein {Ar...    30  9.8

>BF634898 similar to GP|16024936|gb HUA enhancer 2 {Arabidopsis thaliana},
           partial (21%)
          Length = 684

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 7/183 (3%)
 Frame = +3

Query: 186 GADLGGKDPDHVVELCNEVVQEGQSVLIFCSSRKGCESTARHVAKFLKSFTVDINENNCE 245
           G+  GG D   +V++  E  ++ Q V+IF  SR+ CE  A  ++K    F     ++  E
Sbjct: 39  GSASGGSDIYKIVKMIME--RKFQPVIIFSFSRRECEQHAMSMSKL--DFNSQEEKDTVE 206

Query: 246 FADITSAINSLRKCPAGLDPVLEETFPA---GVAFHHAGLTVEEREIVETCYRKGLLRVL 302
                +A+  L +    L P +E   P    G+A HH+GL    +E+VE  +++GL++ L
Sbjct: 207 HV-FQNAMLCLNEEDRSL-PAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKAL 380

Query: 303 TATSTLAAGVNLPARRVIFRQPR----IGCDFIDGTRYMQMAGRAGRTGIDTKGESVLIC 358
            AT T A G+N+PA+ V+F   +        +I    Y+QM+GRAGR G D +G  +++ 
Sbjct: 381 FATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMI 560

Query: 359 KPQ 361
             Q
Sbjct: 561 DEQ 569


>TC85089 similar to PIR|E96621|E96621 hypothetical protein F23H11.8
           [imported] - Arabidopsis thaliana, partial (24%)
          Length = 743

 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 41/244 (16%)
 Frame = +3

Query: 155 TEFRPVPLEEYI----------------KVGNSIYNKSMELSRTIP-------------- 184
           T++RP PL+ YI                K     + K+  L+  IP              
Sbjct: 18  TDYRPTPLQHYIFPSGSEGLYLVVDEKGKFREDSFQKA--LNALIPAADGDRKKENAKWQ 191

Query: 185 KGADLG-GKDPDHVVELCNEVVQ-EGQSVLIFCSSRKGCESTARHVAKFLKSFTVDINEN 242
           KG  LG   +   + ++   ++Q +   V++F  S++ CE  A  +AK       DI ++
Sbjct: 192 KGLVLGKAAEESDIFKMVKMIIQRQYDPVILFNFSKRECEFLAMQMAKM--DLNGDIEKD 365

Query: 243 NCE---FADITSAINSLRKCP--AGLDPVLEETFPAGVAFHHAGLTVEEREIVETCYRKG 297
           N E   +  +    +  +K P  + + P+L+     G+  HH+GL    +E++E  +++G
Sbjct: 366 NIEKIFWCAMDMLSDDDKKLPQVSNMLPLLKR----GIGVHHSGLLPILKEVIEILFQEG 533

Query: 298 LLRVLTATSTLAAGVNLPARRVIFRQPR--IGCDF--IDGTRYMQMAGRAGRTGIDTKGE 353
           L++ L AT T + G+N+PA+ V+F   R   G  F  I    Y+QM+GRAGR GID +G 
Sbjct: 534 LIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWITSGEYIQMSGRAGRRGIDDRGV 713

Query: 354 SVLI 357
            +L+
Sbjct: 714 CILM 725


>AW694815 similar to GP|22091415|gb putative RNA helicase {Arabidopsis
           thaliana}, partial (16%)
          Length = 404

 Score = 70.5 bits (171), Expect = 5e-12
 Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
 Frame = +3

Query: 264 DPVLEETFPAGVAFHHAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQ 323
           D  L  T   G+  HHAGL  ++R +VE  +    ++VL  TSTLA GVNLPA  VI + 
Sbjct: 78  DQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIK- 254

Query: 324 PRIGCDFIDG----------TRYMQMAGRAGRTGIDTKGESVLI 357
              G ++ DG          T  +QM GRAGR   D  G++V++
Sbjct: 255 ---GTEYYDGKTKRYVDFPITDILQMMGRAGRPQFDQHGKAVIL 377


>TC81991 similar to PIR|D96545|D96545 probable DNA polymerase A family protein
            [imported] - Arabidopsis thaliana, partial (32%)
          Length = 1543

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 36/152 (23%), Positives = 61/152 (39%), Gaps = 27/152 (17%)
 Frame = +1

Query: 1209 LDALRVNARDYFVPTQDNWLLLTADYSQIELRLMAHFSKDSTLIELLRKPDGDVFTMIA- 1267
            L+  R   R  F+    N L++ ADY Q+EL+++AH +   +++E   K  GD  +  A 
Sbjct: 235  LEKDRYKIRQAFIAAPGNSLIV-ADYGQLELKILAHLANCKSMMEAF-KAGGDFHSRTAM 408

Query: 1268 ----------------ARWIGCP----------EVSVGSRQREQTKKMVYGILYGMGPNS 1301
                              W   P          + + GS +R + K + + I YG  P  
Sbjct: 409  NMYPYIREAVEKKEVLLEWHPQPGEDKPPVPLLKDAFGS-ERRKAKMLNFSIAYGKTPVG 585

Query: 1302 LAEQMDCTSDEASERISNFKSTFPGVASWLHE 1333
            L++    T  EA + +  + +    V  W  E
Sbjct: 586  LSKDWRVTVKEAKKTVDLWYNDRKEVLQWQEE 681



 Score = 30.8 bits (68), Expect = 4.4
 Identities = 22/67 (32%), Positives = 33/67 (48%)
 Frame = +1

Query: 1437 HVNIVFLPSTSQGSAADIIKIAMIKIYSEIFPGVDKLDSSSSVTAKFEMLRDRCRILLQV 1496
            H+    + +  QGSAAD+   AMI+I +                 K + L    ++LLQV
Sbjct: 781  HIERAAINTPVQGSAADVAMCAMIQIQNN---------------KKLKELG--WKLLLQV 909

Query: 1497 HDELVLE 1503
            HDE++LE
Sbjct: 910  HDEVILE 930


>TC77964 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_90
            {Arabidopsis thaliana}, partial (97%)
          Length = 1454

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 24/78 (30%), Positives = 40/78 (50%), Gaps = 1/78 (1%)
 Frame = +1

Query: 279  HAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGCDFIDGT-RYM 337
            H+G++ EER      +++G  R+L AT  +  G+++    ++     I  D  D    Y+
Sbjct: 1036 HSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIV-----INYDMPDSADTYL 1200

Query: 338  QMAGRAGRTGIDTKGESV 355
               GRAGR G  TKG ++
Sbjct: 1201 HRVGRAGRFG--TKGLAI 1248


>BI271075 homologue to GP|8843865|dbj DEAD-box protein abstrakt {Arabidopsis
           thaliana}, partial (28%)
          Length = 510

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
 Frame = +1

Query: 279 HAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGCDFIDGTRYMQ 338
           H G   EERE   + ++ G   VL AT   + G++ P  + +     +  +  +    + 
Sbjct: 94  HGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD-MPAEIENYVHRIG 270

Query: 339 MAGRAGRTGIDT------KGESVLICKPQELKKVMGLLNESCPPL 377
             GR G+TGI T      + E+ L+    +LK ++    +  PP+
Sbjct: 271 RTGRCGKTGIATTFINKNQSETTLL----DLKHLLQEAKQRIPPV 393


>TC92962 weakly similar to GP|8131846|gb|AAF73104.1| whitefly-induced
           gp91-phox {Lycopersicon esculentum}, partial (7%)
          Length = 666

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 22/68 (32%), Positives = 32/68 (46%)
 Frame = +2

Query: 733 IRKEVGSSSGSDTADTSHSFIDTNHIDNSNVPALEKEKDLIKSSDNGALVSVEGKSDSVM 792
           + K VG  S       S S ID NH          +E+D  K+  +   V+++ + DSV 
Sbjct: 134 LNKRVGRRSAKLNVSNSTSAIDLNH----------QEQDEEKAEQDYVEVTMDIQGDSVA 283

Query: 793 PHSLSTVP 800
            HS+ TVP
Sbjct: 284 LHSVKTVP 307


>TC88191 similar to PIR|D96545|D96545 probable DNA polymerase A family protein
            [imported] - Arabidopsis thaliana, partial (35%)
          Length = 1867

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 17/45 (37%), Positives = 27/45 (59%)
 Frame = +3

Query: 1209 LDALRVNARDYFVPTQDNWLLLTADYSQIELRLMAHFSKDSTLIE 1253
            L+  R   R  FV    N L++ ADY Q+ELR++AH +   +++E
Sbjct: 423  LEKDRYKIRQAFVAAPGNSLIV-ADYGQLELRILAHLTDCKSMLE 554



 Score = 32.3 bits (72), Expect = 1.5
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 1437 HVNIVFLPSTSQGSAADIIKIAMIKIYSEIFPGVDKLDSSSSVTAKFEMLRDR-CRILLQ 1495
            H+    + +  QGSAAD+  +AM++I                  +K + L++   ++LLQ
Sbjct: 973  HIERAAINTPVQGSAADVAMLAMLEI------------------SKNKQLKELGWKLLLQ 1098

Query: 1496 VHDELVLE 1503
            VHDE++LE
Sbjct: 1099 VHDEVILE 1122


>TC90389 similar to GP|21592590|gb|AAM64539.1 unknown {Arabidopsis
           thaliana}, partial (22%)
          Length = 658

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 18/49 (36%), Positives = 26/49 (52%)
 Frame = -3

Query: 272 PAGVAFHHAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVI 320
           P  V+   AGL V+  E+  T   KGLL  + + ST+   V L +R V+
Sbjct: 344 PEIVSIDKAGLVVQVNEL*HTGQAKGLLLRVISFSTMTESVGLVSRNVV 198


>TC87779 GP|7208771|emb|CAB76908.1 putative Ruv DNA-helicase {Cicer
           arietinum}, partial (62%)
          Length = 1186

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +1

Query: 43  PKDTSVAVCTIEKANSLINRLLEEGRLSEM--GIIVIDELHMVGDPKRGYLLELMLTKLR 100
           P+ T +     ++ N ++NR ++EG ++E+  G++ IDE+HM+      YL   + + L 
Sbjct: 289 PRKTEITDKLRQEINKVVNRYIDEG-VAELVPGVLFIDEVHMLDMECFSYLNRALESSLS 465

Query: 101 ----YAAGEGI 107
               +A   GI
Sbjct: 466 PIVIFATNRGI 498


>CB065351 homologue to GP|12002056|gb| DNA polymerase I {Salmonella
            typhimurium}, partial (8%)
          Length = 493

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/52 (23%), Positives = 26/52 (49%)
 Frame = -2

Query: 1291 YGILYGMGPNSLAEQMDCTSDEASERISNFKSTFPGVASWLHEAVAFCRSKG 1342
            +G++YGM    L+ Q++    E+   +  +   +PGV  ++    A  + +G
Sbjct: 483  FGLIYGMSAFGLSRQLNIPRKESQRYMDLYFERYPGVREYMERTRAQAKEQG 328


>TC89731 similar to GP|15809986|gb|AAL06920.1 AT3g19540/T31J18_4
           {Arabidopsis thaliana}, partial (21%)
          Length = 717

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 46/190 (24%), Positives = 70/190 (36%), Gaps = 21/190 (11%)
 Frame = +1

Query: 215 CSSRKGCESTARHVAKFLKSFT---VDINENNCEFADITSAINSLR-KCPAGLDPVLEET 270
           CS++    S+ +H    +  FT   +     +C+        +SL+ +   GL P     
Sbjct: 76  CSNKPISVSSQKHNTITILDFTHFSLSSQWQSCKMERKQGFFSSLKDEVVRGLSPARSRA 255

Query: 271 -FPAGVAFHHAGLTVEER-------EIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFR 322
             PA  A   +GL    R       E+  T  R G LR L A S L  G           
Sbjct: 256 KSPARSASPMSGLLRRRRKNQGVPPELFMT--RSGSLRPLEALSPLKEGP---------- 399

Query: 323 QPRIGCDFIDGTRYMQMAGRAGRTGIDTKGE---------SVLICKPQELKKVMGLLNES 373
                    DGT    +  R G+ G   KG+         S   CK  +L+ ++G+L   
Sbjct: 400 ---------DGTDGEDVGNREGKWGHWMKGQLAKAPSVSSSSSACKKSDLRLLLGVLGAP 552

Query: 374 CPPLHSCLSE 383
             P+H C ++
Sbjct: 553 LAPVHVCTTD 582


>BG645095 similar to GP|9294413|dbj kinase-like protein {Arabidopsis
           thaliana}, partial (35%)
          Length = 805

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 17/54 (31%), Positives = 20/54 (36%)
 Frame = +2

Query: 700 AEEARIAAFSAFKSLGYDVPQFAPPISTAVCNSIRKEVGSSSGSDTADTSHSFI 753
           AE  R      F     D P    P+    CNS +K   SS G D  D    F+
Sbjct: 419 AELLRHPHLQPFVLRSRDAPSVFLPVHLISCNSPKKSYKSSGGKDNKDKEEGFV 580


>TC84995 similar to PIR|E86342|E86342 hypothetical protein AAD30595.1
           [imported] - Arabidopsis thaliana, partial (10%)
          Length = 674

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 12/37 (32%), Positives = 23/37 (61%)
 Frame = +2

Query: 48  VAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVG 84
           V + T EK ++L  R  +   + ++ + +IDELH++G
Sbjct: 500 VIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIG 610


>TC91326 homologue to GP|18252903|gb|AAL62378.1 putative protein {Arabidopsis
            thaliana}, partial (4%)
          Length = 802

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 34/155 (21%), Positives = 72/155 (45%), Gaps = 12/155 (7%)
 Frame = -1

Query: 1076 QCGRWRNQMRK-AAHNGCCRRVAQTRALCSVLW---KLLVSEKL----VEALMEIEIPLV 1127
            QC  W+++ ++ +  N    +V  T  LCSVL    KL + + L    +  L + ++ ++
Sbjct: 532  QC--WKDKGKE*SGSNNNIIKVTSTLLLCSVLLCNNKLTILKPLHLLLIYCLFKCQLLML 359

Query: 1128 NVLADMELWGIGVDLEGCIQARKLLVKRLKQLEKEAYKLAGMTFSLSMPADIAKVLFEH- 1186
             +L   EL  + +  +        L+ + K +     KL  +   LS    + ++  E+ 
Sbjct: 358  LLLLFQELSVVHLFFQIPNSFTLQLLGKTKTILLRKEKLKNLIIILSSKVVVGEIEIENK 179

Query: 1187 ---LKLPIPDGKNKGKNHPSTGKHCLDALRVNARD 1218
               +K+   DG++K   +P+T K+C+     N+++
Sbjct: 178  DKRIKIGSEDGESKITGNPNTKKNCVAEDTSNSKE 74


>BE249065 
          Length = 599

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -3

Query: 934 LSGNRKDDGFSLTACSSKQKVSSSNSKQDLMNAMHR--WSRISKIIEKKEVRKFTWNLKV 991
           LSG ++ +   + +CS KQ  SS ++ +   N   +  W+   K+   K++R+ T NL  
Sbjct: 372 LSGQKEFEVSRVRSCSHKQSHSSHHTSRSCYNQRSKDWWNN*IKLRLHKQMRRKT*NLSR 193

Query: 992 QIQ 994
            IQ
Sbjct: 192 NIQ 184


>TC83919 similar to GP|17065412|gb|AAL32860.1 Unknown protein {Arabidopsis
            thaliana}, partial (61%)
          Length = 926

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 1362 YLWAVCNLIMCKYIHDPDM*RLSREGNDFC 1391
            Y W+ C L+   + H  D+*  S +GN FC
Sbjct: 622  YTWSFCTLLSFAFPHAIDL*EGSEKGNIFC 711


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,958,181
Number of Sequences: 36976
Number of extensions: 686782
Number of successful extensions: 3255
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 3202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3251
length of query: 1603
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1494
effective length of database: 4,984,343
effective search space: 7446608442
effective search space used: 7446608442
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)