BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127021.10 + phase: 0 /pseudo/partial
(264 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabi... 40 0.001
TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 35 0.039
TC77722 similar to GP|11994464|dbj|BAB02466. tyrosine phosphatas... 32 0.25
TC78878 similar to GP|4519792|dbj|BAA75744.1 Asp1 {Arabidopsis t... 31 0.43
TC78386 similar to SP|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprote... 31 0.56
TC76852 similar to PIR|T09581|T09581 probable high mobility grou... 31 0.56
TC80056 similar to GP|12322859|gb|AAG51421.1 unknown protein co... 30 0.95
TC86173 similar to GP|15810175|gb|AAL06989.1 At2g03890/T18C20.9 ... 30 1.2
CB065391 homologue to PIR|B83396|B83 probable CoA transferase s... 30 1.2
AL376409 weakly similar to GP|19034063|gb hypothetical protein {... 29 1.6
TC82282 similar to PIR|T08544|T08544 hypothetical protein F27B13... 28 2.8
TC78385 weakly similar to PIR|T21861|T21861 hypothetical protein... 28 3.6
TC78773 similar to GP|17473842|gb|AAL38345.1 unknown protein {Ar... 28 3.6
TC80646 similar to GP|21553926|gb|AAM63009.1 unknown {Arabidopsi... 28 4.7
TC88579 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d... 28 4.7
TC89064 similar to GP|17381038|gb|AAL36331.1 putative cyclophyli... 27 6.2
TC87154 similar to GP|2289893|gb|AAB65076.1| unknown {Saccharomy... 27 8.1
TC82330 similar to PIR|F84919|F84919 glutathione-conjugate trans... 27 8.1
>CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabidopsis
thaliana}, partial (35%)
Length = 837
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/56 (42%), Positives = 32/56 (56%)
Frame = +1
Query: 168 VSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSI 223
+ KILRSL ++ V IEE KDL T+++E L SL+ +E E KK K I
Sbjct: 559 MEKILRSLDPKFEHIVEKIEETKDLETMTIEKLQGSLQAYE------EKHKKKKDI 708
>TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (61%)
Length = 1288
Score = 34.7 bits (78), Expect = 0.039
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Frame = +3
Query: 155 LQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVE-DLVSSLKVHEMSLNE 213
L+++KK S+ S+ P P + AK N + + S + S ++
Sbjct: 267 LKVVKKEESSSEESSESEDEQPVVKAPAPSKKTPAKKGNVKKAQPETTSEESDSDSSSSD 446
Query: 214 HETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQ 256
E KK S A+PSK + S+ A K SEEE + SDED+
Sbjct: 447 EEEVKKPVSKAVPSK---NGSAPAKKVDTSEEEDSEESSDEDK 566
>TC77722 similar to GP|11994464|dbj|BAB02466. tyrosine phosphatase-like
protein {Arabidopsis thaliana}, partial (69%)
Length = 2248
Score = 32.0 bits (71), Expect = 0.25
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 212 NEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSCKDGYA 263
++HE +KKS + S S+ A A ++ES DGD D+D DG A
Sbjct: 1602 SKHEVTKKSDESSSASPAPVEASTPAPNA---DKESGDGDHDKDDVFSDGEA 1748
>TC78878 similar to GP|4519792|dbj|BAA75744.1 Asp1 {Arabidopsis thaliana},
partial (53%)
Length = 1839
Score = 31.2 bits (69), Expect = 0.43
Identities = 18/48 (37%), Positives = 25/48 (51%)
Frame = +3
Query: 172 LRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKK 219
L S +W+P VTAI LNT S+ L+SS + + L T+ K
Sbjct: 285 LISRSRKWKPVVTAISTRSFLNTESLRKLISSPSIIQTLLRSTATAFK 428
>TC78386 similar to SP|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein
precursor [Contains: Dentin phosphoprotein (Dentin
phosphophoryn) (DPP);, partial (2%)
Length = 726
Score = 30.8 bits (68), Expect = 0.56
Identities = 22/69 (31%), Positives = 33/69 (46%), Gaps = 6/69 (8%)
Frame = +3
Query: 189 AKDLNTLSVEDLVSSLKVHEMSLNEHETS---KKSKSIALPSKGKTSKSSKAY---KASE 242
+ D + S L S + S +EHETS KK K P K K + SK++ +
Sbjct: 228 SSDSDFYSSSSLSDSSRSESSSNSEHETSHRSKKHKKSDKPKKNKEKERSKSHRHKRHKH 407
Query: 243 SEEESPDGD 251
S +E P+G+
Sbjct: 408 SLKEKPNGE 434
>TC76852 similar to PIR|T09581|T09581 probable high mobility group protein
HMG1 - sword bean, partial (93%)
Length = 731
Score = 30.8 bits (68), Expect = 0.56
Identities = 18/93 (19%), Positives = 38/93 (40%)
Frame = +2
Query: 164 VSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSI 223
+S+ + + PS V K+ LS D + + E+E + ++ ++
Sbjct: 209 MSEFRERFKKENPSNKSVAVVGKAGGKEWKALSDADKAPFIAKADKLKEEYEKTMRAYNM 388
Query: 224 ALPSKGKTSKSSKAYKASESEEESPDGDSDEDQ 256
+ K + + SE ++ DGD +ED+
Sbjct: 389 GITEKNASEEEGSEKSKSEVNDDDEDGDDEEDE 487
>TC80056 similar to GP|12322859|gb|AAG51421.1 unknown protein contains
TNFR/NGFR cysteine-rich region; 28705-27186 {Arabidopsis
thaliana}, partial (98%)
Length = 879
Score = 30.0 bits (66), Expect = 0.95
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -2
Query: 146 SRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLS 196
SRF SG L K+ ++ SKILR++ S + P+++ + K+ N+ S
Sbjct: 539 SRFWNFASGTFFL*KNDIIIGISSKILRNILSLYCPRISKAGQKKEQNSNS 387
>TC86173 similar to GP|15810175|gb|AAL06989.1 At2g03890/T18C20.9 {Arabidopsis
thaliana}, partial (74%)
Length = 2669
Score = 29.6 bits (65), Expect = 1.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 199 DLVSSLKVHEMSLNEHETSKKSKSIALPSKGK---TSKSSKAYKASESEEESPDGDSDE 254
D+ L +++L ++S++LP G + SK Y++ E EEE DG+S E
Sbjct: 1850 DIDCDLAGSDLTLKMTMDDPLTRSLSLPGLGSGNGRNPFSKLYESIEEEEEEGDGESPE 2026
>CB065391 homologue to PIR|B83396|B83 probable CoA transferase subunit B
PA2000 [imported] - Pseudomonas aeruginosa (strain
PAO1), partial (63%)
Length = 591
Score = 29.6 bits (65), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 35 GLDEELWDILEDGVDDLDLDEEGAAID 61
GLD L+D L +G DD +DE+ +D
Sbjct: 453 GLDSALFDTLFEGTDDHPIDEDARGVD 533
>AL376409 weakly similar to GP|19034063|gb hypothetical protein {Oryza sativa
(japonica cultivar-group)}, partial (1%)
Length = 478
Score = 29.3 bits (64), Expect = 1.6
Identities = 22/69 (31%), Positives = 37/69 (52%), Gaps = 2/69 (2%)
Frame = -1
Query: 169 SKILRSLPSRWRPKVTAIEEAKDLNTLSVEDL--VSSLKVHEMSLNEHETSKKSKSIALP 226
SK + ++ + + K+ A+ E K + + E + VSS KV LN++++S S+ L
Sbjct: 226 SKKISAIVNHDKSKIAALPELKVRTSKASETVQNVSSAKVKTQKLNDNKSSMNSEGTIL- 50
Query: 227 SKGKTSKSS 235
K KT SS
Sbjct: 49 KKSKTGISS 23
>TC82282 similar to PIR|T08544|T08544 hypothetical protein F27B13.70 -
Arabidopsis thaliana, partial (84%)
Length = 904
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/60 (28%), Positives = 27/60 (44%), Gaps = 10/60 (16%)
Frame = +2
Query: 82 IIVASIPRTEYMKMSDKSTAKAMFASL----------CANFEGSKKVKEAKALMLVHQYE 131
++ SIPR E K SDKS +K S+ C + +G+ V + + +H E
Sbjct: 488 VVTLSIPRVEGPKPSDKSGSKKFVLSVAWSPDGKRLACGSMDGTISVFDVQRAKFLHHLE 667
>TC78385 weakly similar to PIR|T21861|T21861 hypothetical protein F36F2.3 -
Caenorhabditis elegans, partial (1%)
Length = 1417
Score = 28.1 bits (61), Expect = 3.6
Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 3/54 (5%)
Frame = +3
Query: 189 AKDLNTLSVEDLVSSLKVHEMSLNEHETS---KKSKSIALPSKGKTSKSSKAYK 239
+ D + S L S + S +EHETS KK K P K K + SK+++
Sbjct: 219 SSDSDFYSSSSLSDSSRSESSSNSEHETSHRSKKHKKSDKPKKNKEKERSKSHR 380
>TC78773 similar to GP|17473842|gb|AAL38345.1 unknown protein {Arabidopsis
thaliana}, partial (90%)
Length = 1449
Score = 28.1 bits (61), Expect = 3.6
Identities = 41/166 (24%), Positives = 62/166 (36%), Gaps = 4/166 (2%)
Frame = -2
Query: 69 QKKLYKKHHKIRGIIVASIPRTEY-MKMSDKSTAKAMFASLCAN--FEGSKKVKEAKALM 125
QK Y K R V PR + K+ +FAS C ++ KKV A +
Sbjct: 791 QKMSYTKRPAKRMAPVLKEPRESISIPWIQKARPNILFASQCLRRAYQAQKKVPGTAATI 612
Query: 126 LVHQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTA 185
+ + S + Y + QT+ S Q + ++ + ++PS + V
Sbjct: 611 C-------DLVNSISTDRKYGKRQTMRSSFQWFGRKRLIDGNNVAESATMPSTKK*PVKT 453
Query: 186 IEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKS-KSIALPSKGK 230
V SL+ + SKKS SIALP+KGK
Sbjct: 452 --------------------VFTKSLDRNLNSKKSDNSIALPTKGK 375
>TC80646 similar to GP|21553926|gb|AAM63009.1 unknown {Arabidopsis
thaliana}, partial (86%)
Length = 841
Score = 27.7 bits (60), Expect = 4.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 212 NEHETSKKSKSIALPSKGKTSKSSKAYKASESE 244
++H TS+K+ P++GK SK KAS+S+
Sbjct: 489 HKHNTSRKTPESKQPTQGKRSK*QVHQKASKSQ 391
>TC88579 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
HD2-P39 {Glycine max}, partial (40%)
Length = 1069
Score = 27.7 bits (60), Expect = 4.7
Identities = 18/48 (37%), Positives = 26/48 (53%)
Frame = +2
Query: 212 NEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSCK 259
+E + S SI S + S+S + ASESEEE+P DE ++ K
Sbjct: 458 SESDFSGSDISINEESDTEESESEEETPASESEEETPAKKVDEGKNKK 601
>TC89064 similar to GP|17381038|gb|AAL36331.1 putative cyclophylin protein
{Arabidopsis thaliana}, partial (30%)
Length = 1125
Score = 27.3 bits (59), Expect = 6.2
Identities = 29/113 (25%), Positives = 44/113 (38%)
Frame = +2
Query: 148 FQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVH 207
F + G++ILKK + K P++ V E +K + +VE K
Sbjct: 734 FGKVTKGIEILKKMEQLGTADGK-----PTQPIKIVDCGEVSKAKSQYAVEKEKEKRKKS 898
Query: 208 EMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSCKD 260
SL ++S K ++ K SSK + + S D DSD D D
Sbjct: 899 IKSLTSDDSSDADKKLSR----KRKTSSKDRRKRRRKYSSSDSDSDSDSYSSD 1045
>TC87154 similar to GP|2289893|gb|AAB65076.1| unknown {Saccharomyces
cerevisiae}, partial (1%)
Length = 1787
Score = 26.9 bits (58), Expect = 8.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 210 SLNEHETSKKSKSIALPSKGKTSK 233
SLN HE+S KS + S+ KTSK
Sbjct: 74 SLNSHESSSKSSLSLIKSEFKTSK 145
>TC82330 similar to PIR|F84919|F84919 glutathione-conjugate transporter
AtMRP4 [imported] - Arabidopsis thaliana, partial (18%)
Length = 1215
Score = 26.9 bits (58), Expect = 8.1
Identities = 22/69 (31%), Positives = 33/69 (46%), Gaps = 11/69 (15%)
Frame = +1
Query: 199 DLVSSLKVHEMSLNEHETSKKS--------KSIALPSKGKTS---KSSKAYKASESEEES 247
D + L+ HE S+ ETS K+ K +PSK K S K S + S+SE+ +
Sbjct: 577 DFGALLEAHESSMKMAETSDKTSNDSAQSQKLARIPSKEKESGGEKQSSSEDQSKSEKTA 756
Query: 248 PDGDSDEDQ 256
DE++
Sbjct: 757 AKLIEDEER 783
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.310 0.127 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,830,228
Number of Sequences: 36976
Number of extensions: 76487
Number of successful extensions: 477
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of query: 264
length of database: 9,014,727
effective HSP length: 94
effective length of query: 170
effective length of database: 5,538,983
effective search space: 941627110
effective search space used: 941627110
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC127021.10