Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126794.7 - phase: 1 /pseudo
         (830 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85977 similar to GP|10176918|dbj|BAB10162. auxin response fact...  1069  0.0
TC92002 similar to GP|4104929|gb|AAD02218.1| auxin response fact...   204  4e-83
TC88775 homologue to PIR|F86427|F86427 auxin response factor 6 (...   275  5e-74
TC91430 similar to PIR|F86427|F86427 auxin response factor 6 (AR...   225  6e-59
TC82637 similar to PIR|G86331|G86331 IAA24 [imported] - Arabidop...   219  4e-57
TC88776 homologue to PIR|F86427|F86427 auxin response factor 6 (...    95  3e-53
BQ124121 similar to PIR|G86331|G863 IAA24 [imported] - Arabidops...   184  2e-46
TC83162 homologue to PIR|F86427|F86427 auxin response factor 6 (...   153  3e-40
TC89117 similar to GP|12484199|gb|AAG53998.1 auxin response tran...   158  9e-39
TC93578 similar to GP|9757747|dbj|BAB08228.1 auxin response fact...   100  8e-35
AW688064 homologue to GP|13272405|gb unknown protein {Arabidopsi...   135  8e-32
TC78765 weakly similar to PIR|T47975|T47975 auxin response facto...   117  2e-26
AW695486 homologue to GP|22136676|gb| auxin response factor 1 {A...   100  2e-21
TC92362 similar to GP|19352047|dbj|BAB85917. auxin response fact...    89  8e-21
BQ143982 weakly similar to GP|10176918|dbj auxin response factor...    50  1e-19
TC82150 similar to GP|19352051|dbj|BAB85919. auxin response fact...    91  1e-18
TC88323 similar to PIR|T08917|T08917 auxin response factor 9 - A...    87  3e-17
BG587682 similar to GP|12484199|gb| auxin response transcription...    75  3e-16
BG646172 homologue to PIR|F86427|F86 auxin response factor 6 (AR...    74  2e-13
TC88450 similar to PIR|F86427|F86427 auxin response factor 6 (AR...    73  4e-13

>TC85977 similar to GP|10176918|dbj|BAB10162. auxin response factor-like
            protein {Arabidopsis thaliana}, partial (65%)
          Length = 3162

 Score = 1069 bits (2764), Expect(2) = 0.0
 Identities = 523/524 (99%), Positives = 523/524 (99%)
 Frame = +2

Query: 289  GELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIV 348
            G LRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIV
Sbjct: 893  GSLRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIV 1072

Query: 349  PYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRW 408
            PYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRW
Sbjct: 1073 PYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRW 1252

Query: 409  DETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVS 468
            DETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVS
Sbjct: 1253 DETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVS 1432

Query: 469  MDPLPTSGFQRVLQGQESSTLRGNLAESNDSYTAEKSVAWTPATDEEKMDAVSTSRRYGS 528
            MDPLPTSGFQRVLQGQESSTLRGNLAESNDSYTAEKSVAWTPATDEEKMDAVSTSRRYGS
Sbjct: 1433 MDPLPTSGFQRVLQGQESSTLRGNLAESNDSYTAEKSVAWTPATDEEKMDAVSTSRRYGS 1612

Query: 529  ENWMPMSRQEPTYSDLLSGFGSTREGKHNMLTQWPVMPPGLSLNFLHSNMKGSAQGSDNA 588
            ENWMPMSRQEPTYSDLLSGFGSTREGKHNMLTQWPVMPPGLSLNFLHSNMKGSAQGSDNA
Sbjct: 1613 ENWMPMSRQEPTYSDLLSGFGSTREGKHNMLTQWPVMPPGLSLNFLHSNMKGSAQGSDNA 1792

Query: 589  TYQAQGNMRYSAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPHSRELSQKQMSAKISE 648
            TYQAQGNMRYSAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPHSRELSQKQMSAKISE
Sbjct: 1793 TYQAQGNMRYSAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPHSRELSQKQMSAKISE 1972

Query: 649  AAKPKDSDCKLFGFSLLSSPTMLEPSLSQRNATSETSSHMQISSQHHTFENDQKSEHSKS 708
            AAKPKDSDCKLFGFSLLSSPTMLEPSLSQRNATSETSSHMQISSQHHTFENDQKSEHSKS
Sbjct: 1973 AAKPKDSDCKLFGFSLLSSPTMLEPSLSQRNATSETSSHMQISSQHHTFENDQKSEHSKS 2152

Query: 709  SKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSD 768
            SKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSD
Sbjct: 2153 SKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSD 2332

Query: 769  YDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDDPW 812
            YDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDDPW
Sbjct: 2333 YDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDDPW 2464



 Score =  395 bits (1014), Expect(2) = e-137
 Identities = 200/219 (91%), Positives = 203/219 (92%), Gaps = 3/219 (1%)
 Frame = +3

Query: 81  EAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKI 140
           EAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKI
Sbjct: 282 EAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKI 461

Query: 141 LCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASD 200
           LCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASD
Sbjct: 462 LCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASD 641

Query: 201 TSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRH 260
           TSTHGGFSVL+RHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFR     GQPRRH
Sbjct: 642 TSTHGGFSVLKRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFR-----GQPRRH 806

Query: 261 LLQSGWSVFVSSKRLVA-GDAFIFLRGENG--ELRVGVR 296
           LLQSGWSVFVSSKRLVA G  +I  R E G  EL  GV+
Sbjct: 807 LLQSGWSVFVSSKRLVAWGCIYISER*EWGAFELVSGVQ 923



 Score =  112 bits (281), Expect(2) = e-137
 Identities = 50/50 (100%), Positives = 50/50 (100%)
 Frame = +2

Query: 1   VWDERSGRRKKHGIIRSIYEGKFCQRKR*KQR*WCWRCSKWFFIVINRKR 50
           VWDERSGRRKKHGIIRSIYEGKFCQRKR*KQR*WCWRCSKWFFIVINRKR
Sbjct: 134 VWDERSGRRKKHGIIRSIYEGKFCQRKR*KQR*WCWRCSKWFFIVINRKR 283



 Score = 41.6 bits (96), Expect(2) = 0.0
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +1

Query: 808  GDDPWHLPQRRDSENEPGYTEFK 830
            G    +LPQRRDSENEPGYTEFK
Sbjct: 2482 GSQNIYLPQRRDSENEPGYTEFK 2550


>TC92002 similar to GP|4104929|gb|AAD02218.1| auxin response factor 7
           {Arabidopsis thaliana}, partial (31%)
          Length = 1138

 Score =  204 bits (520), Expect(2) = 4e-83
 Identities = 107/197 (54%), Positives = 138/197 (69%), Gaps = 1/197 (0%)
 Frame = +3

Query: 131 MPVY-DLRPKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHV 189
           +P Y +L  K++C + NV L A+P+TDEV+AQ+TL P    D+ A+          +   
Sbjct: 9   IPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPS 188

Query: 190 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFR 249
             FCKTLTASDTSTHGGFSV RR A++  PPLD S QPP QE+VAKDL+   W FRHI+R
Sbjct: 189 EFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLYDTTWTFRHIYR 368

Query: 250 GELISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSV 309
                GQP+RHLL +GWSVFVS+KRL AGD+ +F+R E  +L +G++R+ RQQ  + SSV
Sbjct: 369 -----GQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSV 533

Query: 310 ISSHSMHLGVLATAWHA 326
           ISS SMH+G+LA A HA
Sbjct: 534 ISSDSMHIGILAAAAHA 584



 Score =  123 bits (308), Expect(2) = 4e-83
 Identities = 66/180 (36%), Positives = 101/180 (55%), Gaps = 7/180 (3%)
 Frame = +1

Query: 333 FTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSD 392
           FT++Y PRTSP EF++P  +Y ++L  + ++GMRF+M FE E++  +R+ GTI GI D D
Sbjct: 604 FTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLD 783

Query: 393 SKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPS 452
             RW  S+WR L+V WDE++   RP RVS W IEP + P  + P P  RPK P+    P 
Sbjct: 784 PVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQ---PG 954

Query: 453 SPDSSVLTREASSKVSMDPLPTSGFQRVLQGQESSTLRG-------NLAESNDSYTAEKS 505
            P+       A  +     +P  G +  ++   SS   G       ++  +N+ ++A +S
Sbjct: 955 MPEDESEIENAFKRA----MPWLGDELGMKDTSSSVFPGLSLVQWMSMXXNNNQFSAAQS 1122


>TC88775 homologue to PIR|F86427|F86427 auxin response factor 6 (ARF6)
           [imported] - Arabidopsis thaliana, partial (23%)
          Length = 678

 Score =  275 bits (703), Expect = 5e-74
 Identities = 131/222 (59%), Positives = 170/222 (76%), Gaps = 1/222 (0%)
 Frame = +3

Query: 192 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGE 251
           FCKTLTASDTSTHGGFSV RR A++  PPLD S+QPP QEL+A+DLHGNEW+FRHIFRG 
Sbjct: 24  FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRG- 200

Query: 252 LISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVIS 311
               QP+RHLL +GWSVFVS+KRLVAGD+ +F+  E  +L +G+RRA R Q  +PSSV+S
Sbjct: 201 ----QPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLS 368

Query: 312 SHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESL-KNNYTIGMRFKMR 370
           S SMHLG+LA A HA  T + FT++Y PR  P+EF++P  +Y++++     ++GMRF+M 
Sbjct: 369 SDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRML 548

Query: 371 FEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETS 412
           FE EE+  +R+ GTI GI D +S RWP S WR +KV WDE++
Sbjct: 549 FETEESSVRRYMGTITGICDLNSVRWPNSHWRSVKVGWDEST 674


>TC91430 similar to PIR|F86427|F86427 auxin response factor 6 (ARF6)
           [imported] - Arabidopsis thaliana, partial (23%)
          Length = 728

 Score =  225 bits (573), Expect = 6e-59
 Identities = 107/199 (53%), Positives = 144/199 (71%)
 Frame = +3

Query: 89  ELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVM 148
           ELWHACAGPLV +P +G  V YFPQGH EQV  STN+  + ++P   L P+++C++ N+ 
Sbjct: 129 ELWHACAGPLVCLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLT 308

Query: 149 LKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFS 208
           + A+ +TDEV+AQ+TL P   +++      A      +   + FCK LTASDTSTHGGFS
Sbjct: 309 MHADTETDEVYAQMTLQPLNPEEQKEAYLPAELGTANKQPTNYFCKILTASDTSTHGGFS 488

Query: 209 VLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRHLLQSGWSV 268
           V RR A++  PPLD ++QPP QEL+A+DLHGN+W+F+HIFR     GQP+RHLL +GWSV
Sbjct: 489 VPRRAAEKVFPPLDFTQQPPAQELIARDLHGNDWKFKHIFR-----GQPKRHLLTTGWSV 653

Query: 269 FVSSKRLVAGDAFIFLRGE 287
           FVS+KRLVAGD+ +F+  E
Sbjct: 654 FVSAKRLVAGDSVLFIWNE 710


>TC82637 similar to PIR|G86331|G86331 IAA24 [imported] - Arabidopsis
           thaliana, partial (28%)
          Length = 889

 Score =  219 bits (557), Expect = 4e-57
 Identities = 115/206 (55%), Positives = 144/206 (69%), Gaps = 4/206 (1%)
 Frame = +1

Query: 86  LYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRP-KILCRV 144
           L  ELWHACAGPLV++P+ G LV+YFPQGH EQV AST + +   +P Y   P ++LC+V
Sbjct: 130 LNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRIATSQIPNYPSLPSQLLCQV 309

Query: 145 INVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKE---APPAPPPRFHVHSFCKTLTASDT 201
            NV L A+ +TDE++AQ+TL P  ++ E     E   +    P  F    FCKTLTASDT
Sbjct: 310 QNVTLHADKETDEIYAQMTLQPLNSEKEVFPVSEFGLSKSKHPTEF----FCKTLTASDT 477

Query: 202 STHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRHL 261
           STHGGFSV RR A++  PPLD + QPPTQELV +DLH N W FRHI+R     GQP+RHL
Sbjct: 478 STHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYR-----GQPKRHL 642

Query: 262 LQSGWSVFVSSKRLVAGDAFIFLRGE 287
           L +GWS+FV SKRL AGD+ +F+R E
Sbjct: 643 LTTGWSLFVGSKRLRAGDSVLFIRDE 720



 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 34/74 (45%), Positives = 46/74 (61%), Gaps = 1/74 (1%)
 Frame = +2

Query: 268 VFVSSKRLVAGDAFIFLRG-ENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA 326
           V +S+++ +      FL G +  +LRVGVRRA RQQ  +PSSV+S+ S   GVLA A HA
Sbjct: 659 VCLSAQKGLEQAILFFLSGMKKSQLRVGVRRANRQQTTLPSSVLSADSCTFGVLAAAAHA 838

Query: 327 VLTGTMFTVYYKPR 340
                 FT++Y PR
Sbjct: 839 AANRKSFTIFYNPR 880


>TC88776 homologue to PIR|F86427|F86427 auxin response factor 6 (ARF6)
           [imported] - Arabidopsis thaliana, partial (22%)
          Length = 1278

 Score = 95.1 bits (235), Expect(3) = 3e-53
 Identities = 44/85 (51%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
 Frame = +3

Query: 89  ELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVY-DLRPKILCRVINV 147
           ELWHACAGPLV++P  G  V YFPQGH EQV  STN+  + H+P Y  L P+++C++ N+
Sbjct: 582 ELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNL 761

Query: 148 MLKAEPDTDEVFAQVTLVPEPNQDE 172
            + A+ +TDEV+AQ+TL P   Q++
Sbjct: 762 TMHADVETDEVYAQMTLQPLNAQEQ 836



 Score = 94.4 bits (233), Expect(3) = 3e-53
 Identities = 41/54 (75%), Positives = 48/54 (87%)
 Frame = +1

Query: 192 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFR 245
           FCKTLTASDTSTHGGFSV RR A++  PPLD S+QPP QEL+A+DLHGNEW+F+
Sbjct: 895 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFQ 1056



 Score = 59.7 bits (143), Expect(3) = 3e-53
 Identities = 28/41 (68%), Positives = 34/41 (82%)
 Frame = +2

Query: 244  FRHIFRGELISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL 284
            FRHIFRG     QP+RHLL +GWSVFVS+KRLVAGD+ +F+
Sbjct: 1052 FRHIFRG-----QPKRHLLTTGWSVFVSAKRLVAGDSVLFI 1159


>BQ124121 similar to PIR|G86331|G863 IAA24 [imported] - Arabidopsis thaliana,
           partial (2%)
          Length = 569

 Score =  184 bits (466), Expect = 2e-46
 Identities = 95/196 (48%), Positives = 126/196 (63%), Gaps = 2/196 (1%)
 Frame = +2

Query: 213 HADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRHLLQSGWSVFVSS 272
           HAD C P LDM+ QPP Q+LV KDL G EW FRHI+         R HLL +GW+ FV+S
Sbjct: 2   HADRCFP*LDMTLQPPMQDLVVKDLQGIEWNFRHIY-----CDHERAHLLTNGWNTFVNS 166

Query: 273 KRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVI--SSHSMHLGVLATAWHAVLTG 330
           K L  GD+ IF+ GENGE+ +G+RRAM+Q  ++ + +   SS ++ LG LA   HAV  G
Sbjct: 167 KNLRPGDSCIFVSGENGEIGIGIRRAMKQHSHICTKLCQQSSQNIQLGALAAVVHAVSIG 346

Query: 331 TMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIED 390
           ++F + Y P  +P EF++P   Y+ES++ +Y+IG R  M  E    P  R  GTIVG ED
Sbjct: 347 SLFHLQYHPWIAPFEFMIPLKTYVESIEKDYSIGTRVHMLSEVGGCP--RRYGTIVGNED 520

Query: 391 SDSKRWPTSKWRCLKV 406
            D  RWP S+WRC+KV
Sbjct: 521 IDPIRWPGSEWRCIKV 568


>TC83162 homologue to PIR|F86427|F86427 auxin response factor 6 (ARF6)
           [imported] - Arabidopsis thaliana, partial (18%)
          Length = 569

 Score =  153 bits (386), Expect(2) = 3e-40
 Identities = 75/161 (46%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
 Frame = +2

Query: 261 LLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVL 320
           LL +GWSVFVS+KRLVAGD+ +F+  E  +L +G+RRA R Q  +PSSV+SS SMH+G+L
Sbjct: 62  LLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLL 241

Query: 321 ATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNN--YTIGMRFKMRFEGEEAPE 378
           A A HA  T + FTV++ PR SP+EF++P  +Y++++ +   +    RF+M FE EE+  
Sbjct: 242 AAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYHTRPFLSVCRFRMLFETEESSV 421

Query: 379 QRFTGTIVGIEDSDSKRWPTSKWRCLKV-----RWDETSNI 414
           +R+ GTI  I D D  RWP S WR ++V      W +T+ +
Sbjct: 422 RRYMGTITSISDMDPVRWPNSHWRSVRVGGMNHSWGKTATV 544



 Score = 31.2 bits (69), Expect(2) = 3e-40
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 241 EWRFRHIFRGELISGQPRRH 260
           EW+FRHIFR     GQP+RH
Sbjct: 16  EWKFRHIFR-----GQPKRH 60


>TC89117 similar to GP|12484199|gb|AAG53998.1 auxin response transcription
           factor 3 {Arabidopsis thaliana}, partial (26%)
          Length = 861

 Score =  158 bits (399), Expect = 9e-39
 Identities = 82/163 (50%), Positives = 104/163 (63%), Gaps = 9/163 (5%)
 Frame = +1

Query: 89  ELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVM 148
           ELWHACAGPL+++P++G +V Y PQGH EQ       A +  +   ++ P + CRV++V 
Sbjct: 370 ELWHACAGPLISLPKKGSIVVYVPQGHFEQ-------AHDFPVSACNIPPHVFCRVLDVK 528

Query: 149 LKAEPDTDEVFAQVTLVPEPNQDENAV---------EKEAPPAPPPRFHVHSFCKTLTAS 199
           L AE  +DEV+ QV LVPE  Q E  V         E+E   A       H FCKTLTAS
Sbjct: 529 LHAEEGSDEVYCQVLLVPENQQLEQNVREGVIDADAEEEDTEAIVKSTTPHMFCKTLTAS 708

Query: 200 DTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEW 242
           DTSTHGGFSV R  A++C PPLD  +Q P+QELV KDLHG++W
Sbjct: 709 DTSTHGGFSVPRXAAEDCFPPLDYGQQRPSQELVXKDLHGSKW 837


>TC93578 similar to GP|9757747|dbj|BAB08228.1 auxin response factor 4
           {Arabidopsis thaliana}, partial (18%)
          Length = 634

 Score =  100 bits (250), Expect(2) = 8e-35
 Identities = 45/81 (55%), Positives = 61/81 (74%)
 Frame = +1

Query: 87  YRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVIN 146
           Y ELWHACAGPL ++P++G +V YFPQGH+EQ  AS +   +  +P YDL+P+I CRV+N
Sbjct: 178 YLELWHACAGPLTSLPKKGNVVVYFPQGHLEQF-ASFSPFKQLEIPNYDLQPQIFCRVVN 354

Query: 147 VMLKAEPDTDEVFAQVTLVPE 167
           V L A  + DEV+ QVTL+P+
Sbjct: 355 VQLLANKENDEVYTQVTLLPQ 417



 Score = 65.5 bits (158), Expect(2) = 8e-35
 Identities = 30/53 (56%), Positives = 35/53 (65%)
 Frame = +2

Query: 176 EKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPP 228
           ++E     P +   H FCKTLT SDTSTHGGFSV RR A++C PPLD   Q P
Sbjct: 473 DEEGDGGSPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRP 631


>AW688064 homologue to GP|13272405|gb unknown protein {Arabidopsis thaliana},
           partial (15%)
          Length = 576

 Score =  135 bits (339), Expect = 8e-32
 Identities = 73/149 (48%), Positives = 93/149 (61%), Gaps = 7/149 (4%)
 Frame = +1

Query: 159 FAQVTLVPEPNQ-------DENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLR 211
           F+++TL+P  N        D +  E    PA        SF KTLT SD +  GGFSV R
Sbjct: 1   FSKITLIPLRNSELENDDSDGDGSENSEKPA--------SFAKTLTQSDANNGGGFSVPR 156

Query: 212 RHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRHLLQSGWSVFVS 271
             A+   P LD S +PP Q ++AKD+HG  W+FRHI+R     G PRRHLL +GWS FV+
Sbjct: 157 YCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYR-----GTPRRHLLTTGWSSFVN 321

Query: 272 SKRLVAGDAFIFLRGENGELRVGVRRAMR 300
            K+LVAGD+ +FLR E+GEL VG+RRA R
Sbjct: 322 QKKLVAGDSIVFLRAESGELFVGIRRAKR 408


>TC78765 weakly similar to PIR|T47975|T47975 auxin response factor-like
           protein - Arabidopsis thaliana, partial (30%)
          Length = 1586

 Score =  117 bits (292), Expect = 2e-26
 Identities = 60/126 (47%), Positives = 91/126 (71%), Gaps = 5/126 (3%)
 Frame = +3

Query: 338 KPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPE--QRFTGTIVGIEDSDSKR 395
           KPR S  +FI+  ++YME++   +++GMRFKM F+G+++PE  +RF+GTI+G ED  S  
Sbjct: 3   KPRMS--QFIISVNKYMEAINQKFSVGMRFKMSFDGDDSPETDKRFSGTIIGQEDISS-H 173

Query: 396 WPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALA--PPALNPLPMPRPKRPR-ANVVPS 452
           W  SKWR LKV+WD+ ++IPRP+R+SPW+IEP +A  P ++ P  + + KRPR  + VP 
Sbjct: 174 WLNSKWRSLKVQWDDPASIPRPDRISPWEIEPLMASVPTSIQP-AVAKYKRPRLPSEVPD 350

Query: 453 SPDSSV 458
             D++V
Sbjct: 351 FGDTTV 368



 Score =  102 bits (254), Expect = 6e-22
 Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 1/168 (0%)
 Frame = +3

Query: 646 ISEAAKPKDSDCKLFGFSLLSSPTMLEP-SLSQRNATSETSSHMQISSQHHTFENDQKSE 704
           + +  K   + C+LFG  L    T     S    NA   TS     +    T  +  K +
Sbjct: 681 VKDNKKEAATSCRLFGIDLNDPRTNTHKVSEYSANAFGVTSEGCVATPISRTDADQNKFD 860

Query: 705 HSKSSKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLT 764
            SK+SK        +  ++QL  S    +  Q      ++RSCTKV  +G+A+GR+VDLT
Sbjct: 861 ISKASK--------ERKQEQLPISPNETQSKQT-----NSRSCTKVQMQGVAVGRAVDLT 1001

Query: 765 KFSDYDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDDPW 812
               YD+L  EL++LF+ +G+ I P+  W +VFTD+EGDMMLVGDDPW
Sbjct: 1002ALDGYDQLIDELEKLFDIKGQ-IQPRNKWEIVFTDDEGDMMLVGDDPW 1142


>AW695486 homologue to GP|22136676|gb| auxin response factor 1 {Arabidopsis
           thaliana}, partial (9%)
          Length = 480

 Score =  100 bits (250), Expect = 2e-21
 Identities = 44/61 (72%), Positives = 53/61 (86%)
 Frame = +2

Query: 85  ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRV 144
           ALY+ELWHACAGPLVT+PREGE V+YFPQGH+EQ+EAS NQ  EQ MP ++L  KILC+V
Sbjct: 296 ALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKV 475

Query: 145 I 145
           +
Sbjct: 476 V 478


>TC92362 similar to GP|19352047|dbj|BAB85917. auxin response factor 7b
           {Oryza sativa}, partial (11%)
          Length = 399

 Score = 89.0 bits (219), Expect(3) = 8e-21
 Identities = 40/88 (45%), Positives = 60/88 (67%), Gaps = 1/88 (1%)
 Frame = +2

Query: 310 ISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESL-KNNYTIGMRFK 368
           +SS SMH+G+LA A HA    + FTV+Y PR SP+EF++P  +Y  ++  +  + GMRF+
Sbjct: 128 LSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFR 307

Query: 369 MRFEGEEAPEQRFTGTIVGIEDSDSKRW 396
           M FE E++  +R+ GT +G+ D DS RW
Sbjct: 308 MMFETEDSGTRRYMGTXIGVSDLDSVRW 391



 Score = 29.3 bits (64), Expect(3) = 8e-21
 Identities = 14/30 (46%), Positives = 19/30 (62%)
 Frame = +1

Query: 281 FIFLRGENGELRVGVRRAMRQQGNVPSSVI 310
           F   R E  +L +G+RRA RQ  N+ SSV+
Sbjct: 40  FYLYRDEKQQLLLGIRRANRQPTNLSSSVL 129



 Score = 20.8 bits (42), Expect(3) = 8e-21
 Identities = 7/13 (53%), Positives = 12/13 (91%)
 Frame = +3

Query: 273 KRLVAGDAFIFLR 285
           KRL+AGD+ +F++
Sbjct: 15  KRLLAGDSVLFIQ 53


>BQ143982 weakly similar to GP|10176918|dbj auxin response factor-like
           protein {Arabidopsis thaliana}, partial (5%)
          Length = 691

 Score = 50.4 bits (119), Expect(4) = 1e-19
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = +3

Query: 115 HIEQVEASTNQASEQHMPVYDLRPKIL 141
           HIEQVE ST+ ASEQHMPVY+LRPKIL
Sbjct: 405 HIEQVETSTHLASEQHMPVYELRPKIL 485



 Score = 42.4 bits (98), Expect(4) = 1e-19
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 1   VWDERSGRRKKHGIIRS-IYEGKFCQRKR*KQR*WCWRCSKWFFIVINRKR 50
           V DERSG+RKKHG I + +  G     K *    W W C +W + VI   R
Sbjct: 151 VRDERSGKRKKHGFISNHLLNGNCVNPKT*LHPGWRWICYQWLYFVITMTR 303



 Score = 32.3 bits (72), Expect(4) = 1e-19
 Identities = 21/45 (46%), Positives = 25/45 (54%)
 Frame = +1

Query: 135 DLRPKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEA 179
           DLR    CRVIN MLK EPD  EV   +T     ++  N  E+EA
Sbjct: 472 DLRS--FCRVINAMLKGEPDAGEVSGLMTWYHSQSR-LNCFEQEA 597



 Score = 29.3 bits (64), Expect(4) = 1e-19
 Identities = 14/30 (46%), Positives = 18/30 (59%)
 Frame = +2

Query: 81  EAEAALYRELWHACAGPLVTVPREGELVFY 110
           E +AAL + LWHACA P     R+  L F+
Sbjct: 302 EPDAALDK*LWHACACPFAAASRD**LGFH 391


>TC82150 similar to GP|19352051|dbj|BAB85919. auxin response factor 10
           {Oryza sativa}, partial (30%)
          Length = 1263

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 41/71 (57%), Positives = 55/71 (76%)
 Frame = +1

Query: 230 QELVAKDLHGNEWRFRHIFRGELISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENG 289
           Q ++AKD+HG  W+F+HI+RG      PRRHLL +GWS FV+ K+LVAGD+ +FLR ENG
Sbjct: 1   QTIIAKDMHGQCWKFKHIYRGT-----PRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENG 165

Query: 290 ELRVGVRRAMR 300
           +L VG+RRA +
Sbjct: 166 DLCVGIRRAKK 198



 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 60/190 (31%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
 Frame = +2

Query: 323 AWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPE-QRF 381
           A +  + G  F   Y PR S  EF V       +++  +  GMRFKM FE E++     F
Sbjct: 368 AVNGAVNGRSFEGVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWF 547

Query: 382 TGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPR 441
            GTI  +   D  RWP S WR L+V WDE   +   + V+PW +E     P  N  P   
Sbjct: 548 MGTISSVHVQDPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTP 727

Query: 442 P-KRPRANVVP--------SSPDSSVLTREASSKVSM----DPLPTSGFQRVLQGQESST 488
           P K+PR    P        SSP  S +     +K S+    D    S F   +QG   + 
Sbjct: 728 PRKKPRFIQDPYFHLMNQSSSPSISNINLLNYTKSSLCNIQDTTTNSSFASSIQGARHAQ 907

Query: 489 LRGNLAESND 498
              N    +D
Sbjct: 908 FGPNYNNPSD 937


>TC88323 similar to PIR|T08917|T08917 auxin response factor 9 - Arabidopsis
           thaliana, partial (21%)
          Length = 1232

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 65/185 (35%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
 Frame = +3

Query: 635 RELSQKQMSAKISEAAKPKDSDCKLFGFSLLS----SPTMLEPS---LSQRNATSETSSH 687
           R L Q +   K+  A     +  +LFG  L+     S  +  PS   ++    T+E SS 
Sbjct: 495 RMLDQVEKDNKVETA-----TTYRLFGIDLIDHSKKSAAVEIPSSHAVNGNGVTTEVSSS 659

Query: 688 MQISSQHHTFENDQKSEHSKSSKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSC 747
              SS     +  +KS+ SK+S            E++ +  Q   K+ Q K     +RS 
Sbjct: 660 TLSSS-----DTARKSDISKAS-----------FERKQEPQQVSPKETQSKQIC--SRSR 785

Query: 748 TKVHKKGIALGRSVDLTKFSDYDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLV 807
           TKV  +G+A+GR+VDL   + YD+L  EL++LF+ +G+L   +  W +VFTD+E DMMLV
Sbjct: 786 TKVQMQGVAVGRAVDLATLNGYDQLIGELEELFDIKGQL-QHRNTWEIVFTDDERDMMLV 962

Query: 808 GDDPW 812
           GDDPW
Sbjct: 963 GDDPW 977



 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 37/74 (50%), Positives = 49/74 (66%)
 Frame = +1

Query: 378 EQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPL 437
           ++RF+GTIVG+ED  S  W  SKWR LKV+WDE S I RP+RVSPW+IEP ++  +    
Sbjct: 16  DKRFSGTIVGVEDI-SPHWANSKWRSLKVQWDEPSAITRPDRVSPWEIEPFVSSASTGHS 192

Query: 438 PMPRPKRPRANVVP 451
              R K  +A+  P
Sbjct: 193 STDRCKD*KASDQP 234


>BG587682 similar to GP|12484199|gb| auxin response transcription factor 3
           {Arabidopsis thaliana}, partial (16%)
          Length = 451

 Score = 74.7 bits (182), Expect(2) = 3e-16
 Identities = 44/108 (40%), Positives = 57/108 (52%)
 Frame = +1

Query: 378 EQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPL 437
           E RFTG I GI D+D  RWP SKW+CL VRWD+        RVSPW+IEP+ +    + L
Sbjct: 49  EGRFTGLIAGISDADPVRWPGSKWKCLLVRWDDIEASRHNNRVSPWEIEPSGSASNSSNL 228

Query: 438 PMPRPKRPRANVVPSSPDSSVLTREASSKVSMDPLPTSGFQRVLQGQE 485
                KR R     +  +  V     +S    D   +  F++VLQGQE
Sbjct: 229 MAASLKRTRIGFTSAKLEFPVPNGIGAS----DFGESLRFRKVLQGQE 360



 Score = 29.3 bits (64), Expect(2) = 3e-16
 Identities = 12/17 (70%), Positives = 15/17 (87%)
 Frame = +3

Query: 364 GMRFKMRFEGEEAPEQR 380
           GMRF+MRFE E+A E+R
Sbjct: 3   GMRFRMRFETEDAAERR 53


>BG646172 homologue to PIR|F86427|F86 auxin response factor 6 (ARF6)
           [imported] - Arabidopsis thaliana, partial (14%)
          Length = 802

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
 Frame = +1

Query: 372 EGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAP 431
           E EE+  +R+ GTI GI D DS RWP S WR +KV WDE++   R  RVS W+IEP    
Sbjct: 1   ETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTF 180

Query: 432 PALNPLPMP-RPKRPRANVVPS 452
           P + P P P R KRP    +PS
Sbjct: 181 P-MYPSPFPLRLKRPWPPGLPS 243


>TC88450 similar to PIR|F86427|F86427 auxin response factor 6 (ARF6)
           [imported] - Arabidopsis thaliana, partial (17%)
          Length = 1422

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
 Frame = +3

Query: 659 LFGFSLLSSPTMLEPSLSQ------RNATSETSSHMQISSQHHTFENDQKSEHSKSSKPA 712
           LFG ++  S  +L   +S        N  S T S+ Q SS  +T   D    H  +    
Sbjct: 603 LFGVNIDPSSLLLHNGMSNFKGISGNNNDSSTMSYHQSSSYMNTAGADSSLNHGVTPSIG 782

Query: 713 DKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSDYDEL 772
           +   +             H ++   +  +   ++  KV+K G + GRS+D+TKFS Y+EL
Sbjct: 783 ESGFL-------------HTQENGEQGNNPLNKTFVKVYKSG-SFGRSLDITKFSSYNEL 920

Query: 773 TAELDQLFEFRGELISP-QKDWLVVFTDNEGDMMLVGDDPW 812
            +EL ++F   GEL  P +  W +VF D E D++L+GD PW
Sbjct: 921 RSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPW 1043


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,472,523
Number of Sequences: 36976
Number of extensions: 448589
Number of successful extensions: 4067
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 3511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3962
length of query: 830
length of database: 9,014,727
effective HSP length: 104
effective length of query: 726
effective length of database: 5,169,223
effective search space: 3752855898
effective search space used: 3752855898
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)


Medicago: description of AC126794.7