
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126794.7 - phase: 1 /pseudo
(830 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC85977 similar to GP|10176918|dbj|BAB10162. auxin response fact... 1069 0.0
TC92002 similar to GP|4104929|gb|AAD02218.1| auxin response fact... 204 4e-83
TC88775 homologue to PIR|F86427|F86427 auxin response factor 6 (... 275 5e-74
TC91430 similar to PIR|F86427|F86427 auxin response factor 6 (AR... 225 6e-59
TC82637 similar to PIR|G86331|G86331 IAA24 [imported] - Arabidop... 219 4e-57
TC88776 homologue to PIR|F86427|F86427 auxin response factor 6 (... 95 3e-53
BQ124121 similar to PIR|G86331|G863 IAA24 [imported] - Arabidops... 184 2e-46
TC83162 homologue to PIR|F86427|F86427 auxin response factor 6 (... 153 3e-40
TC89117 similar to GP|12484199|gb|AAG53998.1 auxin response tran... 158 9e-39
TC93578 similar to GP|9757747|dbj|BAB08228.1 auxin response fact... 100 8e-35
AW688064 homologue to GP|13272405|gb unknown protein {Arabidopsi... 135 8e-32
TC78765 weakly similar to PIR|T47975|T47975 auxin response facto... 117 2e-26
AW695486 homologue to GP|22136676|gb| auxin response factor 1 {A... 100 2e-21
TC92362 similar to GP|19352047|dbj|BAB85917. auxin response fact... 89 8e-21
BQ143982 weakly similar to GP|10176918|dbj auxin response factor... 50 1e-19
TC82150 similar to GP|19352051|dbj|BAB85919. auxin response fact... 91 1e-18
TC88323 similar to PIR|T08917|T08917 auxin response factor 9 - A... 87 3e-17
BG587682 similar to GP|12484199|gb| auxin response transcription... 75 3e-16
BG646172 homologue to PIR|F86427|F86 auxin response factor 6 (AR... 74 2e-13
TC88450 similar to PIR|F86427|F86427 auxin response factor 6 (AR... 73 4e-13
>TC85977 similar to GP|10176918|dbj|BAB10162. auxin response factor-like
protein {Arabidopsis thaliana}, partial (65%)
Length = 3162
Score = 1069 bits (2764), Expect(2) = 0.0
Identities = 523/524 (99%), Positives = 523/524 (99%)
Frame = +2
Query: 289 GELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIV 348
G LRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIV
Sbjct: 893 GSLRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIV 1072
Query: 349 PYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRW 408
PYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRW
Sbjct: 1073 PYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRW 1252
Query: 409 DETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVS 468
DETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVS
Sbjct: 1253 DETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVS 1432
Query: 469 MDPLPTSGFQRVLQGQESSTLRGNLAESNDSYTAEKSVAWTPATDEEKMDAVSTSRRYGS 528
MDPLPTSGFQRVLQGQESSTLRGNLAESNDSYTAEKSVAWTPATDEEKMDAVSTSRRYGS
Sbjct: 1433 MDPLPTSGFQRVLQGQESSTLRGNLAESNDSYTAEKSVAWTPATDEEKMDAVSTSRRYGS 1612
Query: 529 ENWMPMSRQEPTYSDLLSGFGSTREGKHNMLTQWPVMPPGLSLNFLHSNMKGSAQGSDNA 588
ENWMPMSRQEPTYSDLLSGFGSTREGKHNMLTQWPVMPPGLSLNFLHSNMKGSAQGSDNA
Sbjct: 1613 ENWMPMSRQEPTYSDLLSGFGSTREGKHNMLTQWPVMPPGLSLNFLHSNMKGSAQGSDNA 1792
Query: 589 TYQAQGNMRYSAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPHSRELSQKQMSAKISE 648
TYQAQGNMRYSAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPHSRELSQKQMSAKISE
Sbjct: 1793 TYQAQGNMRYSAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPHSRELSQKQMSAKISE 1972
Query: 649 AAKPKDSDCKLFGFSLLSSPTMLEPSLSQRNATSETSSHMQISSQHHTFENDQKSEHSKS 708
AAKPKDSDCKLFGFSLLSSPTMLEPSLSQRNATSETSSHMQISSQHHTFENDQKSEHSKS
Sbjct: 1973 AAKPKDSDCKLFGFSLLSSPTMLEPSLSQRNATSETSSHMQISSQHHTFENDQKSEHSKS 2152
Query: 709 SKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSD 768
SKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSD
Sbjct: 2153 SKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSD 2332
Query: 769 YDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDDPW 812
YDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDDPW
Sbjct: 2333 YDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDDPW 2464
Score = 395 bits (1014), Expect(2) = e-137
Identities = 200/219 (91%), Positives = 203/219 (92%), Gaps = 3/219 (1%)
Frame = +3
Query: 81 EAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKI 140
EAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKI
Sbjct: 282 EAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKI 461
Query: 141 LCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASD 200
LCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASD
Sbjct: 462 LCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASD 641
Query: 201 TSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRH 260
TSTHGGFSVL+RHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFR GQPRRH
Sbjct: 642 TSTHGGFSVLKRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFR-----GQPRRH 806
Query: 261 LLQSGWSVFVSSKRLVA-GDAFIFLRGENG--ELRVGVR 296
LLQSGWSVFVSSKRLVA G +I R E G EL GV+
Sbjct: 807 LLQSGWSVFVSSKRLVAWGCIYISER*EWGAFELVSGVQ 923
Score = 112 bits (281), Expect(2) = e-137
Identities = 50/50 (100%), Positives = 50/50 (100%)
Frame = +2
Query: 1 VWDERSGRRKKHGIIRSIYEGKFCQRKR*KQR*WCWRCSKWFFIVINRKR 50
VWDERSGRRKKHGIIRSIYEGKFCQRKR*KQR*WCWRCSKWFFIVINRKR
Sbjct: 134 VWDERSGRRKKHGIIRSIYEGKFCQRKR*KQR*WCWRCSKWFFIVINRKR 283
Score = 41.6 bits (96), Expect(2) = 0.0
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +1
Query: 808 GDDPWHLPQRRDSENEPGYTEFK 830
G +LPQRRDSENEPGYTEFK
Sbjct: 2482 GSQNIYLPQRRDSENEPGYTEFK 2550
>TC92002 similar to GP|4104929|gb|AAD02218.1| auxin response factor 7
{Arabidopsis thaliana}, partial (31%)
Length = 1138
Score = 204 bits (520), Expect(2) = 4e-83
Identities = 107/197 (54%), Positives = 138/197 (69%), Gaps = 1/197 (0%)
Frame = +3
Query: 131 MPVY-DLRPKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHV 189
+P Y +L K++C + NV L A+P+TDEV+AQ+TL P D+ A+ +
Sbjct: 9 IPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPS 188
Query: 190 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFR 249
FCKTLTASDTSTHGGFSV RR A++ PPLD S QPP QE+VAKDL+ W FRHI+R
Sbjct: 189 EFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLYDTTWTFRHIYR 368
Query: 250 GELISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSV 309
GQP+RHLL +GWSVFVS+KRL AGD+ +F+R E +L +G++R+ RQQ + SSV
Sbjct: 369 -----GQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSV 533
Query: 310 ISSHSMHLGVLATAWHA 326
ISS SMH+G+LA A HA
Sbjct: 534 ISSDSMHIGILAAAAHA 584
Score = 123 bits (308), Expect(2) = 4e-83
Identities = 66/180 (36%), Positives = 101/180 (55%), Gaps = 7/180 (3%)
Frame = +1
Query: 333 FTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSD 392
FT++Y PRTSP EF++P +Y ++L + ++GMRF+M FE E++ +R+ GTI GI D D
Sbjct: 604 FTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLD 783
Query: 393 SKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPS 452
RW S+WR L+V WDE++ RP RVS W IEP + P + P P RPK P+ P
Sbjct: 784 PVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQ---PG 954
Query: 453 SPDSSVLTREASSKVSMDPLPTSGFQRVLQGQESSTLRG-------NLAESNDSYTAEKS 505
P+ A + +P G + ++ SS G ++ +N+ ++A +S
Sbjct: 955 MPEDESEIENAFKRA----MPWLGDELGMKDTSSSVFPGLSLVQWMSMXXNNNQFSAAQS 1122
>TC88775 homologue to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (23%)
Length = 678
Score = 275 bits (703), Expect = 5e-74
Identities = 131/222 (59%), Positives = 170/222 (76%), Gaps = 1/222 (0%)
Frame = +3
Query: 192 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGE 251
FCKTLTASDTSTHGGFSV RR A++ PPLD S+QPP QEL+A+DLHGNEW+FRHIFRG
Sbjct: 24 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRG- 200
Query: 252 LISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVIS 311
QP+RHLL +GWSVFVS+KRLVAGD+ +F+ E +L +G+RRA R Q +PSSV+S
Sbjct: 201 ----QPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLS 368
Query: 312 SHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESL-KNNYTIGMRFKMR 370
S SMHLG+LA A HA T + FT++Y PR P+EF++P +Y++++ ++GMRF+M
Sbjct: 369 SDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRML 548
Query: 371 FEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETS 412
FE EE+ +R+ GTI GI D +S RWP S WR +KV WDE++
Sbjct: 549 FETEESSVRRYMGTITGICDLNSVRWPNSHWRSVKVGWDEST 674
>TC91430 similar to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (23%)
Length = 728
Score = 225 bits (573), Expect = 6e-59
Identities = 107/199 (53%), Positives = 144/199 (71%)
Frame = +3
Query: 89 ELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVM 148
ELWHACAGPLV +P +G V YFPQGH EQV STN+ + ++P L P+++C++ N+
Sbjct: 129 ELWHACAGPLVCLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLT 308
Query: 149 LKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFS 208
+ A+ +TDEV+AQ+TL P +++ A + + FCK LTASDTSTHGGFS
Sbjct: 309 MHADTETDEVYAQMTLQPLNPEEQKEAYLPAELGTANKQPTNYFCKILTASDTSTHGGFS 488
Query: 209 VLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRHLLQSGWSV 268
V RR A++ PPLD ++QPP QEL+A+DLHGN+W+F+HIFR GQP+RHLL +GWSV
Sbjct: 489 VPRRAAEKVFPPLDFTQQPPAQELIARDLHGNDWKFKHIFR-----GQPKRHLLTTGWSV 653
Query: 269 FVSSKRLVAGDAFIFLRGE 287
FVS+KRLVAGD+ +F+ E
Sbjct: 654 FVSAKRLVAGDSVLFIWNE 710
>TC82637 similar to PIR|G86331|G86331 IAA24 [imported] - Arabidopsis
thaliana, partial (28%)
Length = 889
Score = 219 bits (557), Expect = 4e-57
Identities = 115/206 (55%), Positives = 144/206 (69%), Gaps = 4/206 (1%)
Frame = +1
Query: 86 LYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRP-KILCRV 144
L ELWHACAGPLV++P+ G LV+YFPQGH EQV AST + + +P Y P ++LC+V
Sbjct: 130 LNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRIATSQIPNYPSLPSQLLCQV 309
Query: 145 INVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKE---APPAPPPRFHVHSFCKTLTASDT 201
NV L A+ +TDE++AQ+TL P ++ E E + P F FCKTLTASDT
Sbjct: 310 QNVTLHADKETDEIYAQMTLQPLNSEKEVFPVSEFGLSKSKHPTEF----FCKTLTASDT 477
Query: 202 STHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRHL 261
STHGGFSV RR A++ PPLD + QPPTQELV +DLH N W FRHI+R GQP+RHL
Sbjct: 478 STHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYR-----GQPKRHL 642
Query: 262 LQSGWSVFVSSKRLVAGDAFIFLRGE 287
L +GWS+FV SKRL AGD+ +F+R E
Sbjct: 643 LTTGWSLFVGSKRLRAGDSVLFIRDE 720
Score = 60.5 bits (145), Expect = 3e-09
Identities = 34/74 (45%), Positives = 46/74 (61%), Gaps = 1/74 (1%)
Frame = +2
Query: 268 VFVSSKRLVAGDAFIFLRG-ENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA 326
V +S+++ + FL G + +LRVGVRRA RQQ +PSSV+S+ S GVLA A HA
Sbjct: 659 VCLSAQKGLEQAILFFLSGMKKSQLRVGVRRANRQQTTLPSSVLSADSCTFGVLAAAAHA 838
Query: 327 VLTGTMFTVYYKPR 340
FT++Y PR
Sbjct: 839 AANRKSFTIFYNPR 880
>TC88776 homologue to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (22%)
Length = 1278
Score = 95.1 bits (235), Expect(3) = 3e-53
Identities = 44/85 (51%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Frame = +3
Query: 89 ELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVY-DLRPKILCRVINV 147
ELWHACAGPLV++P G V YFPQGH EQV STN+ + H+P Y L P+++C++ N+
Sbjct: 582 ELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNL 761
Query: 148 MLKAEPDTDEVFAQVTLVPEPNQDE 172
+ A+ +TDEV+AQ+TL P Q++
Sbjct: 762 TMHADVETDEVYAQMTLQPLNAQEQ 836
Score = 94.4 bits (233), Expect(3) = 3e-53
Identities = 41/54 (75%), Positives = 48/54 (87%)
Frame = +1
Query: 192 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFR 245
FCKTLTASDTSTHGGFSV RR A++ PPLD S+QPP QEL+A+DLHGNEW+F+
Sbjct: 895 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFQ 1056
Score = 59.7 bits (143), Expect(3) = 3e-53
Identities = 28/41 (68%), Positives = 34/41 (82%)
Frame = +2
Query: 244 FRHIFRGELISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL 284
FRHIFRG QP+RHLL +GWSVFVS+KRLVAGD+ +F+
Sbjct: 1052 FRHIFRG-----QPKRHLLTTGWSVFVSAKRLVAGDSVLFI 1159
>BQ124121 similar to PIR|G86331|G863 IAA24 [imported] - Arabidopsis thaliana,
partial (2%)
Length = 569
Score = 184 bits (466), Expect = 2e-46
Identities = 95/196 (48%), Positives = 126/196 (63%), Gaps = 2/196 (1%)
Frame = +2
Query: 213 HADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRHLLQSGWSVFVSS 272
HAD C P LDM+ QPP Q+LV KDL G EW FRHI+ R HLL +GW+ FV+S
Sbjct: 2 HADRCFP*LDMTLQPPMQDLVVKDLQGIEWNFRHIY-----CDHERAHLLTNGWNTFVNS 166
Query: 273 KRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVI--SSHSMHLGVLATAWHAVLTG 330
K L GD+ IF+ GENGE+ +G+RRAM+Q ++ + + SS ++ LG LA HAV G
Sbjct: 167 KNLRPGDSCIFVSGENGEIGIGIRRAMKQHSHICTKLCQQSSQNIQLGALAAVVHAVSIG 346
Query: 331 TMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIED 390
++F + Y P +P EF++P Y+ES++ +Y+IG R M E P R GTIVG ED
Sbjct: 347 SLFHLQYHPWIAPFEFMIPLKTYVESIEKDYSIGTRVHMLSEVGGCP--RRYGTIVGNED 520
Query: 391 SDSKRWPTSKWRCLKV 406
D RWP S+WRC+KV
Sbjct: 521 IDPIRWPGSEWRCIKV 568
>TC83162 homologue to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (18%)
Length = 569
Score = 153 bits (386), Expect(2) = 3e-40
Identities = 75/161 (46%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
Frame = +2
Query: 261 LLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVL 320
LL +GWSVFVS+KRLVAGD+ +F+ E +L +G+RRA R Q +PSSV+SS SMH+G+L
Sbjct: 62 LLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLL 241
Query: 321 ATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNN--YTIGMRFKMRFEGEEAPE 378
A A HA T + FTV++ PR SP+EF++P +Y++++ + + RF+M FE EE+
Sbjct: 242 AAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYHTRPFLSVCRFRMLFETEESSV 421
Query: 379 QRFTGTIVGIEDSDSKRWPTSKWRCLKV-----RWDETSNI 414
+R+ GTI I D D RWP S WR ++V W +T+ +
Sbjct: 422 RRYMGTITSISDMDPVRWPNSHWRSVRVGGMNHSWGKTATV 544
Score = 31.2 bits (69), Expect(2) = 3e-40
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 241 EWRFRHIFRGELISGQPRRH 260
EW+FRHIFR GQP+RH
Sbjct: 16 EWKFRHIFR-----GQPKRH 60
>TC89117 similar to GP|12484199|gb|AAG53998.1 auxin response transcription
factor 3 {Arabidopsis thaliana}, partial (26%)
Length = 861
Score = 158 bits (399), Expect = 9e-39
Identities = 82/163 (50%), Positives = 104/163 (63%), Gaps = 9/163 (5%)
Frame = +1
Query: 89 ELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVM 148
ELWHACAGPL+++P++G +V Y PQGH EQ A + + ++ P + CRV++V
Sbjct: 370 ELWHACAGPLISLPKKGSIVVYVPQGHFEQ-------AHDFPVSACNIPPHVFCRVLDVK 528
Query: 149 LKAEPDTDEVFAQVTLVPEPNQDENAV---------EKEAPPAPPPRFHVHSFCKTLTAS 199
L AE +DEV+ QV LVPE Q E V E+E A H FCKTLTAS
Sbjct: 529 LHAEEGSDEVYCQVLLVPENQQLEQNVREGVIDADAEEEDTEAIVKSTTPHMFCKTLTAS 708
Query: 200 DTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEW 242
DTSTHGGFSV R A++C PPLD +Q P+QELV KDLHG++W
Sbjct: 709 DTSTHGGFSVPRXAAEDCFPPLDYGQQRPSQELVXKDLHGSKW 837
>TC93578 similar to GP|9757747|dbj|BAB08228.1 auxin response factor 4
{Arabidopsis thaliana}, partial (18%)
Length = 634
Score = 100 bits (250), Expect(2) = 8e-35
Identities = 45/81 (55%), Positives = 61/81 (74%)
Frame = +1
Query: 87 YRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVIN 146
Y ELWHACAGPL ++P++G +V YFPQGH+EQ AS + + +P YDL+P+I CRV+N
Sbjct: 178 YLELWHACAGPLTSLPKKGNVVVYFPQGHLEQF-ASFSPFKQLEIPNYDLQPQIFCRVVN 354
Query: 147 VMLKAEPDTDEVFAQVTLVPE 167
V L A + DEV+ QVTL+P+
Sbjct: 355 VQLLANKENDEVYTQVTLLPQ 417
Score = 65.5 bits (158), Expect(2) = 8e-35
Identities = 30/53 (56%), Positives = 35/53 (65%)
Frame = +2
Query: 176 EKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPP 228
++E P + H FCKTLT SDTSTHGGFSV RR A++C PPLD Q P
Sbjct: 473 DEEGDGGSPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRP 631
>AW688064 homologue to GP|13272405|gb unknown protein {Arabidopsis thaliana},
partial (15%)
Length = 576
Score = 135 bits (339), Expect = 8e-32
Identities = 73/149 (48%), Positives = 93/149 (61%), Gaps = 7/149 (4%)
Frame = +1
Query: 159 FAQVTLVPEPNQ-------DENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLR 211
F+++TL+P N D + E PA SF KTLT SD + GGFSV R
Sbjct: 1 FSKITLIPLRNSELENDDSDGDGSENSEKPA--------SFAKTLTQSDANNGGGFSVPR 156
Query: 212 RHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRHLLQSGWSVFVS 271
A+ P LD S +PP Q ++AKD+HG W+FRHI+R G PRRHLL +GWS FV+
Sbjct: 157 YCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYR-----GTPRRHLLTTGWSSFVN 321
Query: 272 SKRLVAGDAFIFLRGENGELRVGVRRAMR 300
K+LVAGD+ +FLR E+GEL VG+RRA R
Sbjct: 322 QKKLVAGDSIVFLRAESGELFVGIRRAKR 408
>TC78765 weakly similar to PIR|T47975|T47975 auxin response factor-like
protein - Arabidopsis thaliana, partial (30%)
Length = 1586
Score = 117 bits (292), Expect = 2e-26
Identities = 60/126 (47%), Positives = 91/126 (71%), Gaps = 5/126 (3%)
Frame = +3
Query: 338 KPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPE--QRFTGTIVGIEDSDSKR 395
KPR S +FI+ ++YME++ +++GMRFKM F+G+++PE +RF+GTI+G ED S
Sbjct: 3 KPRMS--QFIISVNKYMEAINQKFSVGMRFKMSFDGDDSPETDKRFSGTIIGQEDISS-H 173
Query: 396 WPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALA--PPALNPLPMPRPKRPR-ANVVPS 452
W SKWR LKV+WD+ ++IPRP+R+SPW+IEP +A P ++ P + + KRPR + VP
Sbjct: 174 WLNSKWRSLKVQWDDPASIPRPDRISPWEIEPLMASVPTSIQP-AVAKYKRPRLPSEVPD 350
Query: 453 SPDSSV 458
D++V
Sbjct: 351 FGDTTV 368
Score = 102 bits (254), Expect = 6e-22
Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 1/168 (0%)
Frame = +3
Query: 646 ISEAAKPKDSDCKLFGFSLLSSPTMLEP-SLSQRNATSETSSHMQISSQHHTFENDQKSE 704
+ + K + C+LFG L T S NA TS + T + K +
Sbjct: 681 VKDNKKEAATSCRLFGIDLNDPRTNTHKVSEYSANAFGVTSEGCVATPISRTDADQNKFD 860
Query: 705 HSKSSKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLT 764
SK+SK + ++QL S + Q ++RSCTKV +G+A+GR+VDLT
Sbjct: 861 ISKASK--------ERKQEQLPISPNETQSKQT-----NSRSCTKVQMQGVAVGRAVDLT 1001
Query: 765 KFSDYDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDDPW 812
YD+L EL++LF+ +G+ I P+ W +VFTD+EGDMMLVGDDPW
Sbjct: 1002ALDGYDQLIDELEKLFDIKGQ-IQPRNKWEIVFTDDEGDMMLVGDDPW 1142
>AW695486 homologue to GP|22136676|gb| auxin response factor 1 {Arabidopsis
thaliana}, partial (9%)
Length = 480
Score = 100 bits (250), Expect = 2e-21
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = +2
Query: 85 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRV 144
ALY+ELWHACAGPLVT+PREGE V+YFPQGH+EQ+EAS NQ EQ MP ++L KILC+V
Sbjct: 296 ALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKV 475
Query: 145 I 145
+
Sbjct: 476 V 478
>TC92362 similar to GP|19352047|dbj|BAB85917. auxin response factor 7b
{Oryza sativa}, partial (11%)
Length = 399
Score = 89.0 bits (219), Expect(3) = 8e-21
Identities = 40/88 (45%), Positives = 60/88 (67%), Gaps = 1/88 (1%)
Frame = +2
Query: 310 ISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESL-KNNYTIGMRFK 368
+SS SMH+G+LA A HA + FTV+Y PR SP+EF++P +Y ++ + + GMRF+
Sbjct: 128 LSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFR 307
Query: 369 MRFEGEEAPEQRFTGTIVGIEDSDSKRW 396
M FE E++ +R+ GT +G+ D DS RW
Sbjct: 308 MMFETEDSGTRRYMGTXIGVSDLDSVRW 391
Score = 29.3 bits (64), Expect(3) = 8e-21
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +1
Query: 281 FIFLRGENGELRVGVRRAMRQQGNVPSSVI 310
F R E +L +G+RRA RQ N+ SSV+
Sbjct: 40 FYLYRDEKQQLLLGIRRANRQPTNLSSSVL 129
Score = 20.8 bits (42), Expect(3) = 8e-21
Identities = 7/13 (53%), Positives = 12/13 (91%)
Frame = +3
Query: 273 KRLVAGDAFIFLR 285
KRL+AGD+ +F++
Sbjct: 15 KRLLAGDSVLFIQ 53
>BQ143982 weakly similar to GP|10176918|dbj auxin response factor-like
protein {Arabidopsis thaliana}, partial (5%)
Length = 691
Score = 50.4 bits (119), Expect(4) = 1e-19
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +3
Query: 115 HIEQVEASTNQASEQHMPVYDLRPKIL 141
HIEQVE ST+ ASEQHMPVY+LRPKIL
Sbjct: 405 HIEQVETSTHLASEQHMPVYELRPKIL 485
Score = 42.4 bits (98), Expect(4) = 1e-19
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 1 VWDERSGRRKKHGIIRS-IYEGKFCQRKR*KQR*WCWRCSKWFFIVINRKR 50
V DERSG+RKKHG I + + G K * W W C +W + VI R
Sbjct: 151 VRDERSGKRKKHGFISNHLLNGNCVNPKT*LHPGWRWICYQWLYFVITMTR 303
Score = 32.3 bits (72), Expect(4) = 1e-19
Identities = 21/45 (46%), Positives = 25/45 (54%)
Frame = +1
Query: 135 DLRPKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEA 179
DLR CRVIN MLK EPD EV +T ++ N E+EA
Sbjct: 472 DLRS--FCRVINAMLKGEPDAGEVSGLMTWYHSQSR-LNCFEQEA 597
Score = 29.3 bits (64), Expect(4) = 1e-19
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = +2
Query: 81 EAEAALYRELWHACAGPLVTVPREGELVFY 110
E +AAL + LWHACA P R+ L F+
Sbjct: 302 EPDAALDK*LWHACACPFAAASRD**LGFH 391
>TC82150 similar to GP|19352051|dbj|BAB85919. auxin response factor 10
{Oryza sativa}, partial (30%)
Length = 1263
Score = 91.3 bits (225), Expect = 1e-18
Identities = 41/71 (57%), Positives = 55/71 (76%)
Frame = +1
Query: 230 QELVAKDLHGNEWRFRHIFRGELISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENG 289
Q ++AKD+HG W+F+HI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR ENG
Sbjct: 1 QTIIAKDMHGQCWKFKHIYRGT-----PRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENG 165
Query: 290 ELRVGVRRAMR 300
+L VG+RRA +
Sbjct: 166 DLCVGIRRAKK 198
Score = 80.9 bits (198), Expect = 2e-15
Identities = 60/190 (31%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Frame = +2
Query: 323 AWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPE-QRF 381
A + + G F Y PR S EF V +++ + GMRFKM FE E++ F
Sbjct: 368 AVNGAVNGRSFEGVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWF 547
Query: 382 TGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPR 441
GTI + D RWP S WR L+V WDE + + V+PW +E P N P
Sbjct: 548 MGTISSVHVQDPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTP 727
Query: 442 P-KRPRANVVP--------SSPDSSVLTREASSKVSM----DPLPTSGFQRVLQGQESST 488
P K+PR P SSP S + +K S+ D S F +QG +
Sbjct: 728 PRKKPRFIQDPYFHLMNQSSSPSISNINLLNYTKSSLCNIQDTTTNSSFASSIQGARHAQ 907
Query: 489 LRGNLAESND 498
N +D
Sbjct: 908 FGPNYNNPSD 937
>TC88323 similar to PIR|T08917|T08917 auxin response factor 9 - Arabidopsis
thaliana, partial (21%)
Length = 1232
Score = 87.0 bits (214), Expect = 3e-17
Identities = 65/185 (35%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Frame = +3
Query: 635 RELSQKQMSAKISEAAKPKDSDCKLFGFSLLS----SPTMLEPS---LSQRNATSETSSH 687
R L Q + K+ A + +LFG L+ S + PS ++ T+E SS
Sbjct: 495 RMLDQVEKDNKVETA-----TTYRLFGIDLIDHSKKSAAVEIPSSHAVNGNGVTTEVSSS 659
Query: 688 MQISSQHHTFENDQKSEHSKSSKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSC 747
SS + +KS+ SK+S E++ + Q K+ Q K +RS
Sbjct: 660 TLSSS-----DTARKSDISKAS-----------FERKQEPQQVSPKETQSKQIC--SRSR 785
Query: 748 TKVHKKGIALGRSVDLTKFSDYDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLV 807
TKV +G+A+GR+VDL + YD+L EL++LF+ +G+L + W +VFTD+E DMMLV
Sbjct: 786 TKVQMQGVAVGRAVDLATLNGYDQLIGELEELFDIKGQL-QHRNTWEIVFTDDERDMMLV 962
Query: 808 GDDPW 812
GDDPW
Sbjct: 963 GDDPW 977
Score = 73.9 bits (180), Expect = 2e-13
Identities = 37/74 (50%), Positives = 49/74 (66%)
Frame = +1
Query: 378 EQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPL 437
++RF+GTIVG+ED S W SKWR LKV+WDE S I RP+RVSPW+IEP ++ +
Sbjct: 16 DKRFSGTIVGVEDI-SPHWANSKWRSLKVQWDEPSAITRPDRVSPWEIEPFVSSASTGHS 192
Query: 438 PMPRPKRPRANVVP 451
R K +A+ P
Sbjct: 193 STDRCKD*KASDQP 234
>BG587682 similar to GP|12484199|gb| auxin response transcription factor 3
{Arabidopsis thaliana}, partial (16%)
Length = 451
Score = 74.7 bits (182), Expect(2) = 3e-16
Identities = 44/108 (40%), Positives = 57/108 (52%)
Frame = +1
Query: 378 EQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPL 437
E RFTG I GI D+D RWP SKW+CL VRWD+ RVSPW+IEP+ + + L
Sbjct: 49 EGRFTGLIAGISDADPVRWPGSKWKCLLVRWDDIEASRHNNRVSPWEIEPSGSASNSSNL 228
Query: 438 PMPRPKRPRANVVPSSPDSSVLTREASSKVSMDPLPTSGFQRVLQGQE 485
KR R + + V +S D + F++VLQGQE
Sbjct: 229 MAASLKRTRIGFTSAKLEFPVPNGIGAS----DFGESLRFRKVLQGQE 360
Score = 29.3 bits (64), Expect(2) = 3e-16
Identities = 12/17 (70%), Positives = 15/17 (87%)
Frame = +3
Query: 364 GMRFKMRFEGEEAPEQR 380
GMRF+MRFE E+A E+R
Sbjct: 3 GMRFRMRFETEDAAERR 53
>BG646172 homologue to PIR|F86427|F86 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (14%)
Length = 802
Score = 74.3 bits (181), Expect = 2e-13
Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +1
Query: 372 EGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAP 431
E EE+ +R+ GTI GI D DS RWP S WR +KV WDE++ R RVS W+IEP
Sbjct: 1 ETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTF 180
Query: 432 PALNPLPMP-RPKRPRANVVPS 452
P + P P P R KRP +PS
Sbjct: 181 P-MYPSPFPLRLKRPWPPGLPS 243
>TC88450 similar to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (17%)
Length = 1422
Score = 73.2 bits (178), Expect = 4e-13
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
Frame = +3
Query: 659 LFGFSLLSSPTMLEPSLSQ------RNATSETSSHMQISSQHHTFENDQKSEHSKSSKPA 712
LFG ++ S +L +S N S T S+ Q SS +T D H +
Sbjct: 603 LFGVNIDPSSLLLHNGMSNFKGISGNNNDSSTMSYHQSSSYMNTAGADSSLNHGVTPSIG 782
Query: 713 DKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSDYDEL 772
+ + H ++ + + ++ KV+K G + GRS+D+TKFS Y+EL
Sbjct: 783 ESGFL-------------HTQENGEQGNNPLNKTFVKVYKSG-SFGRSLDITKFSSYNEL 920
Query: 773 TAELDQLFEFRGELISP-QKDWLVVFTDNEGDMMLVGDDPW 812
+EL ++F GEL P + W +VF D E D++L+GD PW
Sbjct: 921 RSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPW 1043
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,472,523
Number of Sequences: 36976
Number of extensions: 448589
Number of successful extensions: 4067
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 3511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3962
length of query: 830
length of database: 9,014,727
effective HSP length: 104
effective length of query: 726
effective length of database: 5,169,223
effective search space: 3752855898
effective search space used: 3752855898
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC126794.7