TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126788.1 - phase: 0 /pseudo
         (981 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF003873 similar to GP|14715222|em putative polyprotein {Cicer a...   107  2e-23
BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, pa...    52  9e-07
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly...    50  6e-06
BF650415 similar to GP|20196875|gb unknown protein {Arabidopsis ...    31  2.7

>BF003873 similar to GP|14715222|em putative polyprotein {Cicer arietinum},
           partial (82%)
          Length = 559

 Score =  107 bits (267), Expect = 2e-23
 Identities = 69/129 (53%), Positives = 80/129 (61%)
 Frame = +3

Query: 850 VH*NLRS*LQSLLAHIRYLRESGQWLIGWVCPLIFRICMTCSTCRSCGSMYRILRILFLG 909
           V *+ RS*L   L  IRY +E  +W I W    IF ICM    CR+ GSM+RI  +    
Sbjct: 12  VL*SQRS*L*DSLVRIRYQKELERWRIEWDYHRIF*ICMMSFMCRNFGSMFRIHLM*SRV 191

Query: 910 MTCKLETTLRWKPYR*ELMIGR*NP*EVKRYHL*ESFGVERLEKV*LGSWKVRCGSCTQS 969
           M CK ETTLR + YR* LMI +*  *E +RY L*ESFG ER+ K * GS +VR  S  QS
Sbjct: 192 MMCKSETTLR*RLYR*GLMIEK*RH*EARRYLL*ESFGTERMVKA*RGSLRVRWWSLIQS 371

Query: 970 CLFEVRFRG 978
           CL EV FRG
Sbjct: 372 CLHEVNFRG 398


>BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, partial (33%)
          Length = 560

 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 34/72 (47%), Positives = 44/72 (60%)
 Frame = +1

Query: 470 LNSLET*VLFANCHPRVCSWVCRKSIVNS*IVSEKRNRLMSSLWI**LIVMKLRIVISKL 529
           LNS ET*V F  C  RV +W C +S  N  IVS++  R M S  I* L +++L++VI KL
Sbjct: 70  LNSSET*VWFVKCRHRV*NWGC*RSTTNFWIVSKRLRRWM*SW*I*CLGIIRLKMVILKL 249

Query: 530 MNKVC*SSDAEF 541
           M K C S   E+
Sbjct: 250 MIKECCSFGIEY 285


>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 736

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 48/113 (42%), Positives = 57/113 (49%)
 Frame = +3

Query: 342 FTVMRLSWV*EVF*CKMERW*RMLLGS*GCMKRIILLTIYSWLRWFLF*RFGGTTCMVPD 401
           F   RLS  *  +*  M R      GS*  M+      I  WLR +  *RFG  TCMVP 
Sbjct: 54  FIQTRLSLD*VAY*PSMRRSSPTRQGS*ENMRETTPPMI*KWLR*YSP*RFGAHTCMVPR 233

Query: 402 SKCSVTIRA*NIYLIRRS*T*GRGDG*SY*RIMILG*TIIRVKPM*LQML*VG 454
            +   TI+ *+I+L   S*T*GRG G + *   I    IIR K +  Q L* G
Sbjct: 234 FRYIRTIKV*SIFLPSLS*T*GRGGGWNS*LTTI*TSLIIREKLIW*QTL*AG 392


>BF650415 similar to GP|20196875|gb unknown protein {Arabidopsis thaliana},
           partial (82%)
          Length = 666

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 17/39 (43%), Positives = 25/39 (63%)
 Frame = -1

Query: 222 KRRSCMPNCQSASFG*VK*VFLAILFLVVVLQWILQKLM 260
           +RRSC  +C +A F  ++ +FL  LFL + L  +LQ LM
Sbjct: 174 ERRSCSFSCSAALFCSLETIFLCFLFLNLSLFLLLQILM 58


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.373    0.166    0.653 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,129,858
Number of Sequences: 36976
Number of extensions: 539713
Number of successful extensions: 7435
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 5723
Number of HSP's gapped (non-prelim): 2125
length of query: 981
length of database: 9,014,727
effective HSP length: 105
effective length of query: 876
effective length of database: 5,132,247
effective search space: 4495848372
effective search space used: 4495848372
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (22.0 bits)
S2: 63 (28.9 bits)