BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126786.8 - phase: 0 /pseudo
(688 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL383170 similar to GP|21805681|gb| hypothetical protein {Arabid... 238 7e-63
CA917961 homologue to GP|12325083|gb| hypothetical protein; 3218... 111 8e-25
TC93571 similar to GP|20466788|gb|AAM20711.1 unknown protein {Ar... 105 4e-23
BE318919 similar to GP|12325083|gb hypothetical protein; 3218-17... 96 4e-20
BE203564 similar to GP|21593168|gb unknown {Arabidopsis thaliana... 63 3e-10
TC90673 weakly similar to GP|5921507|emb|CAB56510.1 putative ank... 62 6e-10
TC86890 weakly similar to GP|4406801|gb|AAD20110.1| unknown prot... 60 2e-09
TC80056 similar to GP|12322859|gb|AAG51421.1 unknown protein co... 60 2e-09
TC88687 similar to GP|9294323|dbj|BAB02220.1 gene_id:K24M9.11~un... 58 1e-08
AW688467 similar to GP|17979079|gb unknown protein {Arabidopsis ... 56 5e-08
TC83746 homologue to GP|9955582|emb|CAC05509.1 rec-like protein ... 50 2e-06
AW691309 similar to GP|20160716|dbj hypothetical protein~similar... 49 5e-06
BE941353 similar to GP|9294323|dbj| gene_id:K24M9.11~unknown pro... 46 4e-05
AW693450 similar to GP|331580|gb|AA ORF II {Cauliflower mosaic v... 42 0.001
TC78852 similar to GP|19310653|gb|AAL85057.1 unknown protein {Ar... 35 0.018
TC85286 similar to GP|3776572|gb|AAC64889.1| ESTs gb|R65052 gb|... 34 0.21
TC77654 similar to GP|22137236|gb|AAM91463.1 At2g36630/F1O11.26 ... 30 3.1
TC83451 weakly similar to GP|19310653|gb|AAL85057.1 unknown prot... 30 3.1
TC81101 similar to GP|22136262|gb|AAM91209.1 unknown protein {Ar... 30 3.1
TC91084 similar to PIR|G84576|G84576 probable beta-1 3-glucanase... 30 4.0
>AL383170 similar to GP|21805681|gb| hypothetical protein {Arabidopsis
thaliana}, partial (8%)
Length = 375
Score = 238 bits (606), Expect = 7e-63
Identities = 123/124 (99%), Positives = 124/124 (99%)
Frame = +3
Query: 420 TSALCE*AHGNLQN*IPMKQLRH*LKLEHRRLCFVQLVLDLMHMMSIIYQVAI*VEEAAL 479
TSALCE*AHGNLQN*IPMKQLRH*LKLEHRRLCFVQLVLDLMHMMSIIYQVA+*VEEAAL
Sbjct: 3 TSALCE*AHGNLQN*IPMKQLRH*LKLEHRRLCFVQLVLDLMHMMSIIYQVAV*VEEAAL 182
Query: 480 LVTEDFITNMIKQGHQGYLLPRVHTLPVKQAGKI*MRATTV*VT*AVHKCPTYLLRQCRG 539
LVTEDFITNMIKQGHQGYLLPRVHTLPVKQAGKI*MRATTV*VT*AVHKCPTYLLRQCRG
Sbjct: 183 LVTEDFITNMIKQGHQGYLLPRVHTLPVKQAGKI*MRATTV*VT*AVHKCPTYLLRQCRG 362
Query: 540 QV*T 543
QV*T
Sbjct: 363 QV*T 374
>CA917961 homologue to GP|12325083|gb| hypothetical protein; 3218-172
{Arabidopsis thaliana}, partial (17%)
Length = 686
Score = 111 bits (278), Expect = 8e-25
Identities = 67/189 (35%), Positives = 91/189 (47%), Gaps = 35/189 (18%)
Frame = +1
Query: 49 VYSLLALSVFFLYVRCTAIDPADLGV------------------------------MIDC 78
V S VF LY+ C A DPAD GV + D
Sbjct: 70 VTSFQITCVFGLYIWCAAADPADPGVFKSKKYLKIPDSKKLSGFKDSKLGGGSNSSVNDG 249
Query: 79 DKTSKNRSKLDEELAEPSKTRLKDDGISDQHDSNGCSKLGCCL-----CSFLAREDCRSD 133
+ ++ +D+E A ++ LKD IS + S C L C+++ C S
Sbjct: 250 NASTIGPKSMDKE-AFGTEASLKDASISIEKKSASPPSPSCFLWLFSPCAYIC--SCASS 420
Query: 134 EDFILQQQSGEEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISF 193
+ Q+ E+ +C+LC EV K+SKHCR CDKCVD FDHHCRWLNNC+G+KNY +F
Sbjct: 421 HEHSSDLQASEDGMFYCSLCEVEVFKYSKHCRVCDKCVDRFDHHCRWLNNCIGKKNYRNF 600
Query: 194 VCLMAVSLV 202
LM +L+
Sbjct: 601 FTLMVAALL 627
>TC93571 similar to GP|20466788|gb|AAM20711.1 unknown protein {Arabidopsis
thaliana}, partial (10%)
Length = 458
Score = 105 bits (263), Expect = 4e-23
Identities = 51/75 (68%), Positives = 59/75 (78%)
Frame = +2
Query: 1 MGRRHGWELPFHTFQVVAITVFFLLCIAYYAFFAPFLGKDIFEFVAFGVYSLLALSVFFL 60
M R+HGW+LP HTFQVVAITVF LL IA+YAF APFLG I+E+ GVYS +AL F L
Sbjct: 158 MVRKHGWQLPAHTFQVVAITVFCLLVIAFYAFLAPFLGGRIWEYTFIGVYSPVALIAFIL 337
Query: 61 YVRCTAIDPADLGVM 75
YV CTAI+PAD G+M
Sbjct: 338 YVTCTAINPADPGIM 382
>BE318919 similar to GP|12325083|gb hypothetical protein; 3218-172
{Arabidopsis thaliana}, partial (20%)
Length = 568
Score = 96.3 bits (238), Expect = 4e-20
Identities = 38/63 (60%), Positives = 48/63 (75%)
Frame = +1
Query: 142 SGEEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLMAVSL 201
+ E+ +C+LC EV K+SKHCR CDKCVD FDHHCRWLNNC+G+KNY +F LM +L
Sbjct: 1 ASEDGMFYCSLCEVEVFKYSKHCRVCDKCVDRFDHHCRWLNNCIGKKNYRNFFTLMVAAL 180
Query: 202 VWV 204
+ V
Sbjct: 181 LLV 189
>BE203564 similar to GP|21593168|gb unknown {Arabidopsis thaliana}, partial
(39%)
Length = 675
Score = 63.2 bits (152), Expect = 3e-10
Identities = 26/60 (43%), Positives = 33/60 (54%), Gaps = 3/60 (5%)
Frame = +3
Query: 151 TLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISF---VCLMAVSLVWVSCM 207
T CN E +KHC CDKCV FDH C WL NC+G++N+ F +C +W M
Sbjct: 3 TYCNVEQPPRAKHCHDCDKCVLQFDHRCVWLGNCIGQRNHCQFWWYLCEETAVCIWTGFM 182
>TC90673 weakly similar to GP|5921507|emb|CAB56510.1 putative ankyrin
repeat-containing protein {Mortierella alpina}, partial
(7%)
Length = 1052
Score = 62.4 bits (150), Expect = 6e-10
Identities = 28/74 (37%), Positives = 40/74 (53%), Gaps = 13/74 (17%)
Frame = +3
Query: 150 CTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKN---YISFVCL---------- 196
C C SKHC +C +CV+ FDHHC W++NCVG++N + F+CL
Sbjct: 207 CPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTITSSVSAV 386
Query: 197 MAVSLVWVSCMKMP 210
+AV +W S +P
Sbjct: 387 IAVHRIWTSIPAVP 428
>TC86890 weakly similar to GP|4406801|gb|AAD20110.1| unknown protein
{Arabidopsis thaliana}, partial (54%)
Length = 2446
Score = 60.5 bits (145), Expect = 2e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 150 CTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLMAVSL 201
C C +KHC +CD+CV+ FDHHC W++NC+G+KN F + + +
Sbjct: 1335 CATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFAFLILEV 1490
>TC80056 similar to GP|12322859|gb|AAG51421.1 unknown protein contains
TNFR/NGFR cysteine-rich region; 28705-27186 {Arabidopsis
thaliana}, partial (98%)
Length = 879
Score = 60.5 bits (145), Expect = 2e-09
Identities = 22/48 (45%), Positives = 29/48 (59%)
Frame = +3
Query: 150 CTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLM 197
C+ C SKHC CD+CV FDHHC W+NNC+G +N F+ +
Sbjct: 510 CSTCKIPKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFMAFL 653
>TC88687 similar to GP|9294323|dbj|BAB02220.1 gene_id:K24M9.11~unknown
protein {Arabidopsis thaliana}, partial (48%)
Length = 1300
Score = 58.2 bits (139), Expect = 1e-08
Identities = 23/57 (40%), Positives = 32/57 (55%)
Frame = +2
Query: 145 EDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLMAVSL 201
E+ FC C+ + HCRSC KC+ DHHC ++ NCVG N+ SF+ + L
Sbjct: 593 ENYTFCHYCSRPKSPRTHHCRSCGKCILNMDHHCPFIGNCVGAANHRSFIAFLISGL 763
>AW688467 similar to GP|17979079|gb unknown protein {Arabidopsis thaliana},
partial (49%)
Length = 638
Score = 55.8 bits (133), Expect = 5e-08
Identities = 29/84 (34%), Positives = 40/84 (47%)
Frame = +1
Query: 149 FCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLMAVSLVWVSCMK 208
+C C HC C+ CV+ FDHHC W+ C+G +NY F M VS + C+
Sbjct: 160 YCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYF--FMFVSSATLLCIY 333
Query: 209 MPISLS*I*LSLSPFYSSVLY*KN 232
+ S+S FY VL +N
Sbjct: 334 V--------FSISAFYIKVLMDEN 381
>TC83746 homologue to GP|9955582|emb|CAC05509.1 rec-like protein
{Arabidopsis thaliana}, partial (15%)
Length = 402
Score = 50.4 bits (119), Expect = 2e-06
Identities = 23/47 (48%), Positives = 26/47 (54%), Gaps = 10/47 (21%)
Frame = +1
Query: 154 NAEVRKFSK----------HCRSCDKCVDGFDHHCRWLNNCVGRKNY 190
NAE +K K HCR C +CV DHHC W+NNCVG NY
Sbjct: 256 NAEQKKCDKCFGYKPPRTHHCRVCRRCVLKMDHHCLWINNCVGYWNY 396
>AW691309 similar to GP|20160716|dbj hypothetical protein~similar to
Arabidopsis thaliana chromosome 3 At3g02290, partial
(15%)
Length = 662
Score = 49.3 bits (116), Expect = 5e-06
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 149 FCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLMAVSLVWVS 205
+C C HC C+ CV+ FDHHC W+ C+G + S +CL V ++++
Sbjct: 72 YCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLVS--SIICLPMVMFLFIN 236
>BE941353 similar to GP|9294323|dbj| gene_id:K24M9.11~unknown protein
{Arabidopsis thaliana}, partial (22%)
Length = 251
Score = 46.2 bits (108), Expect = 4e-05
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 141 QSGEEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCV 185
Q E+ FC C+ + +CRSC KC+ DHHC ++ NCV
Sbjct: 116 QGDLENYTFCLYCSKPKSPRAHNCRSCGKCILDMDHHCPFIGNCV 250
>AW693450 similar to GP|331580|gb|AA ORF II {Cauliflower mosaic virus},
partial (10%)
Length = 191
Score = 41.6 bits (96), Expect = 0.001
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 1 MGRRHGWELPFHTFQV 16
MGRRHGWELPFHTFQV
Sbjct: 144 MGRRHGWELPFHTFQV 191
>TC78852 similar to GP|19310653|gb|AAL85057.1 unknown protein {Arabidopsis
thaliana}, partial (83%)
Length = 1619
Score = 35.0 bits (79), Expect(2) = 0.018
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Frame = +2
Query: 174 FDHHCRWLNNCVGRKNYISF---------VCLMAVSLVWVSCMKM 209
FDHHC W C+G +NY F +C+ + W+ K+
Sbjct: 776 FDHHCPWGGQCIGLRNYRFFFMFVFTTTLLCVYVFAFCWIYIRKI 910
Score = 21.2 bits (43), Expect(2) = 0.018
Identities = 7/24 (29%), Positives = 10/24 (41%)
Frame = +1
Query: 149 FCTLCNAEVRKFSKHCRSCDKCVD 172
+C C HC C+ CV+
Sbjct: 700 YCDTCMLYRPPRCSHCSICNNCVE 771
>TC85286 similar to GP|3776572|gb|AAC64889.1| ESTs gb|R65052 gb|AA712146
gb|H76533 gb|H76282 gb|AA650771 gb|H76287
gb|AA650887 gb|N37383, partial (77%)
Length = 1947
Score = 33.9 bits (76), Expect = 0.21
Identities = 22/74 (29%), Positives = 36/74 (47%), Gaps = 16/74 (21%)
Frame = -2
Query: 10 PFHTFQVVAITVFF---LLCIAYYAFFAPFLGKDIFEFVA-------------FGVYSLL 53
P +++ + I +FF LLC + +F++ F +++ FVA V+ +
Sbjct: 299 PLYSYIFLYICLFFSRFLLCFIFVSFYSCFSCRNLLVFVAMFFSFSLFLFLLILFVFLVF 120
Query: 54 ALSVFFLYVRCTAI 67
L VFFLYV C I
Sbjct: 119 VLFVFFLYVLCICI 78
>TC77654 similar to GP|22137236|gb|AAM91463.1 At2g36630/F1O11.26 {Arabidopsis
thaliana}, partial (94%)
Length = 1939
Score = 30.0 bits (66), Expect = 3.1
Identities = 11/32 (34%), Positives = 16/32 (49%)
Frame = +3
Query: 174 FDHHCRWLNNCVGRKNYISFVCLMAVSLVWVS 205
F HHC WLN+ R + C + L W++
Sbjct: 1167 FHHHCLWLNSTYSRGSPFPMHCTSSQCLFWLA 1262
>TC83451 weakly similar to GP|19310653|gb|AAL85057.1 unknown protein
{Arabidopsis thaliana}, partial (33%)
Length = 558
Score = 30.0 bits (66), Expect = 3.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 168 DKCVDGFDHHCRWL 181
D CV+ FDHHC W+
Sbjct: 517 DNCVERFDHHCPWV 558
>TC81101 similar to GP|22136262|gb|AAM91209.1 unknown protein {Arabidopsis
thaliana}, partial (37%)
Length = 1188
Score = 30.0 bits (66), Expect = 3.1
Identities = 14/53 (26%), Positives = 26/53 (48%)
Frame = -3
Query: 70 ADLGVMIDCDKTSKNRSKLDEELAEPSKTRLKDDGISDQHDSNGCSKLGCCLC 122
+ +G +I C+K+S E++ K++ + I D+ D GC +G C
Sbjct: 529 SSVGRIIPCEKSSSAEDDSSSEVSLTQKSKSMLEFILDEFDLKGCFSIGITPC 371
>TC91084 similar to PIR|G84576|G84576 probable beta-1 3-glucanase [imported]
- Arabidopsis thaliana, partial (25%)
Length = 732
Score = 29.6 bits (65), Expect = 4.0
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +3
Query: 12 HTFQVVAITVFFLLCIAYYAFFAPFLGKDIFEFVAFGVYSLLALSVFFLYV 62
+ ++ V+IT+FFL I ++ F +GK+ F + V+ + +S F YV
Sbjct: 189 YKYRSVSITIFFLYSILFFIF**KLMGKNWF---SRWVFMAMMMSTIFWYV 332
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.354 0.157 0.536
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,354,096
Number of Sequences: 36976
Number of extensions: 424003
Number of successful extensions: 5638
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 2323
Number of HSP's successfully gapped in prelim test: 328
Number of HSP's that attempted gapping in prelim test: 3207
Number of HSP's gapped (non-prelim): 2829
length of query: 688
length of database: 9,014,727
effective HSP length: 103
effective length of query: 585
effective length of database: 5,206,199
effective search space: 3045626415
effective search space used: 3045626415
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 62 (28.5 bits)
Medicago: description of AC126786.8