TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126786.2 - phase: 0 
         (161 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC80152 similar to PIR|G86340|G86340 protein F2D10.35 [imported]...   133  3e-32
TC85005 similar to PIR|G86340|G86340 protein F2D10.35 [imported]...    81  1e-23
TC89921 similar to GP|21594296|gb|AAM65991.1 unknown {Arabidopsi...    30  0.56
TC78024 similar to GP|20804963|dbj|BAB92640. hypothetical protei...    29  0.95
BQ150142 GP|4028979|emb glutamate permease {synthetic construct}...    28  2.1
TC89322 similar to GP|15292799|gb|AAK92768.1 unknown protein {Ar...    27  4.7
TC78599 similar to GP|9758008|dbj|BAB08605.1 contains similarity...    27  4.7

>TC80152 similar to PIR|G86340|G86340 protein F2D10.35 [imported] -
           Arabidopsis thaliana, partial (24%)
          Length = 692

 Score =  133 bits (335), Expect = 3e-32
 Identities = 64/66 (96%), Positives = 66/66 (99%)
 Frame = +1

Query: 1   ISRNLKYEDPFDNPLVKVSKSKSSVEMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQWKRP 60
           ISRNLKYEDPFDNPLVKVSKSKSSVEMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQWKRP
Sbjct: 493 ISRNLKYEDPFDNPLVKVSKSKSSVEMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQWKRP 672

Query: 61  TVFLKE 66
           TVFL++
Sbjct: 673 TVFLRK 690


>TC85005 similar to PIR|G86340|G86340 protein F2D10.35 [imported] -
           Arabidopsis thaliana, partial (16%)
          Length = 525

 Score = 81.3 bits (199), Expect(2) = 1e-23
 Identities = 36/38 (94%), Positives = 36/38 (94%)
 Frame = +2

Query: 75  DPDTIRWIPANHPFATTSTDIGEDFAHKNVSQKHGVPF 112
           DPDTIRWIPANHPFATTSTDIGEDFAHKNVSQKHG  F
Sbjct: 2   DPDTIRWIPANHPFATTSTDIGEDFAHKNVSQKHGGSF 115



 Score = 44.7 bits (104), Expect(2) = 1e-23
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 110 VPFRIQAEHEALQRKLEALQN 130
           VPFRIQAEHEALQRKLEALQN
Sbjct: 108 VPFRIQAEHEALQRKLEALQN 170


>TC89921 similar to GP|21594296|gb|AAM65991.1 unknown {Arabidopsis
           thaliana}, partial (45%)
          Length = 1649

 Score = 29.6 bits (65), Expect = 0.56
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 19  SKSKSSVEMCGKVYRLAPVTLTQEEQAVHQRRR 51
           +K  +  E+CGKV +  PVTL +   +V +R R
Sbjct: 856 TKGTNKCEICGKVVQNLPVTLLRVSSSVQRRNR 954


>TC78024 similar to GP|20804963|dbj|BAB92640. hypothetical protein~similar
           to Arabidopsis thaliana chromosome 3 At3g51270, partial
           (43%)
          Length = 1107

 Score = 28.9 bits (63), Expect = 0.95
 Identities = 13/60 (21%), Positives = 30/60 (49%), Gaps = 2/60 (3%)
 Frame = +2

Query: 97  EDFAHKNVSQKHGVPFRIQAEHEALQRKLEALQNVSLSRIRNFNSP--MFDTVLEVVVQM 154
           ++FA     Q HG P     EH      +  +Q   L +++   +P  +F+T++ +++++
Sbjct: 605 KEFAFMKALQTHGFPVPEAVEHNRHCVIMSLVQGYPLVQVKQLQNPETVFETIIGIIIRL 784


>BQ150142 GP|4028979|emb glutamate permease {synthetic construct}, partial
           (2%)
          Length = 1273

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/26 (57%), Positives = 16/26 (60%)
 Frame = +3

Query: 67  GESVPPDVDPDTIRWIPANHPFATTS 92
           G S PPD+DPD    IPA  PFA  S
Sbjct: 330 GTSRPPDLDPDLP--IPATPPFAFDS 401


>TC89322 similar to GP|15292799|gb|AAK92768.1 unknown protein {Arabidopsis
          thaliana}, partial (30%)
          Length = 619

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 12/45 (26%), Positives = 23/45 (50%)
 Frame = +3

Query: 19 SKSKSSVEMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQWKRPTVF 63
          S+ K     CG V+   P++L ++E+    ++  R  +  +PT F
Sbjct: 54 SQPKPISRFCGYVFHYVPISL*RQEEEEKHQQTIRTRRTTKPTRF 188


>TC78599 similar to GP|9758008|dbj|BAB08605.1 contains similarity to
           limonene cyclase~gene_id:MED24.9 {Arabidopsis thaliana},
           partial (85%)
          Length = 1857

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 5/77 (6%)
 Frame = +1

Query: 81  WIPANHPFATTSTD-IGEDFAHKNVSQKHGVPF----RIQAEHEALQRKLEALQNVSLSR 135
           W P N PF T + + I   F      Q+H   F    +IQ+E  A++      ++ SL R
Sbjct: 868 WFPKNIPFGTEALELIISCFLAMIGGQRHQSQFQTCTKIQSERFAMRTH---QRDSSLQR 1038

Query: 136 IRNFNSPMFDTVLEVVV 152
           +  F  P+F  V  +V+
Sbjct: 1039MYLFQKPIFKPVQYMVL 1089


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,995,739
Number of Sequences: 36976
Number of extensions: 62183
Number of successful extensions: 296
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of query: 161
length of database: 9,014,727
effective HSP length: 88
effective length of query: 73
effective length of database: 5,760,839
effective search space: 420541247
effective search space used: 420541247
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)