BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126783.2 + phase: 0
(147 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC85887 similar to SP|P49637|R27C_ARATH 60S ribosomal protein L2... 304 7e-84
TC85888 similar to SP|P49637|R27C_ARATH 60S ribosomal protein L2... 303 2e-83
BG583240 homologue to GP|3608481|gb| ribosomal protein L27a {Pet... 258 8e-70
BQ154254 similar to SP|P49637|R27C_ 60S ribosomal protein L27a-C... 189 3e-49
BG454473 similar to GP|12329967|emb serine-threonine protein kin... 30 0.46
TC92591 weakly similar to GP|21593452|gb|AAM65419.1 unknown {Ara... 29 0.60
TC81693 28 1.0
TC81272 similar to PIR|T05225|T05225 extensin homolog F17I5.160 ... 28 1.7
TC88014 similar to GP|15215786|gb|AAK91438.1 AT3g43520/T18D12_90... 27 3.0
BG645618 similar to GP|18158619|gb WRKY-like drought-induced pro... 27 3.9
TC81307 weakly similar to GP|4335772|gb|AAD17449.1| unknown prot... 27 3.9
TC88887 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli... 25 8.7
TC84613 similar to GP|10176939|dbj|BAB10088. DNAJ-like protein {... 25 8.7
>TC85887 similar to SP|P49637|R27C_ARATH 60S ribosomal protein L27a-C.
[Mouse-ear cress] {Arabidopsis thaliana}, complete
Length = 736
Score = 304 bits (779), Expect = 7e-84
Identities = 147/147 (100%), Positives = 147/147 (100%)
Frame = +3
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 54 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 233
Query: 61 FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGVLPQNQP 120
FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGVLPQNQP
Sbjct: 234 FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGVLPQNQP 413
Query: 121 FVVKTKLISKIAEKKIKEAGGAVVLTA 147
FVVKTKLISKIAEKKIKEAGGAVVLTA
Sbjct: 414 FVVKTKLISKIAEKKIKEAGGAVVLTA 494
>TC85888 similar to SP|P49637|R27C_ARATH 60S ribosomal protein L27a-C.
[Mouse-ear cress] {Arabidopsis thaliana}, complete
Length = 585
Score = 303 bits (776), Expect = 2e-83
Identities = 146/147 (99%), Positives = 147/147 (99%)
Frame = +1
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 40 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 219
Query: 61 FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGVLPQNQP 120
FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAP+IDVTQFGFFKLLGKGVLPQNQP
Sbjct: 220 FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPMIDVTQFGFFKLLGKGVLPQNQP 399
Query: 121 FVVKTKLISKIAEKKIKEAGGAVVLTA 147
FVVKTKLISKIAEKKIKEAGGAVVLTA
Sbjct: 400 FVVKTKLISKIAEKKIKEAGGAVVLTA 480
>BG583240 homologue to GP|3608481|gb| ribosomal protein L27a {Petunia x
hybrida}, partial (93%)
Length = 722
Score = 258 bits (658), Expect = 8e-70
Identities = 124/147 (84%), Positives = 136/147 (92%), Gaps = 1/147 (0%)
Frame = +3
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
TT KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF
Sbjct: 3 TTSLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 182
Query: 62 HKLRNKFYNPIVNIDKIASLIPQDVKEKALK-ENKAPVIDVTQFGFFKLLGKGVLPQNQP 120
HKLRNKF++P VNID + SL+PQ+VK+KA K ++ APVIDVTQFGFFK+LGKGVLP+NQ
Sbjct: 183 HKLRNKFHSPTVNIDTLWSLLPQEVKDKASKSKDVAPVIDVTQFGFFKVLGKGVLPKNQS 362
Query: 121 FVVKTKLISKIAEKKIKEAGGAVVLTA 147
VVK KL+SKIAEKKIKEAGGAV+LTA
Sbjct: 363 VVVKAKLVSKIAEKKIKEAGGAVLLTA 443
>BQ154254 similar to SP|P49637|R27C_ 60S ribosomal protein L27a-C. [Mouse-ear
cress] {Arabidopsis thaliana}, partial (64%)
Length = 516
Score = 189 bits (480), Expect = 3e-49
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = +3
Query: 52 YFGKVGMRYFHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLG 111
YFGKVGMRYFHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLG
Sbjct: 9 YFGKVGMRYFHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLG 188
Query: 112 KGVLPQNQPFVVKTKLISKIAEKKIKEAGGAVVLTA 147
KGVLPQNQPFVVKTKLISKIAE KIKEAGGAVVLTA
Sbjct: 189 KGVLPQNQPFVVKTKLISKIAEXKIKEAGGAVVLTA 296
>BG454473 similar to GP|12329967|emb serine-threonine protein kinase
{Leishmania major}, partial (3%)
Length = 638
Score = 29.6 bits (65), Expect = 0.46
Identities = 14/32 (43%), Positives = 19/32 (58%), Gaps = 3/32 (9%)
Frame = +1
Query: 11 KRGHVSAGHGRIGK---HRKHPGGRGNAGGMH 39
+R H AG + + HR H GGRG++GG H
Sbjct: 28 RRSHQCAGAQHLTEASHHRIHCGGRGSSGGQH 123
>TC92591 weakly similar to GP|21593452|gb|AAM65419.1 unknown {Arabidopsis
thaliana}, partial (40%)
Length = 654
Score = 29.3 bits (64), Expect = 0.60
Identities = 19/81 (23%), Positives = 36/81 (43%), Gaps = 3/81 (3%)
Frame = -3
Query: 53 FGKVGMRYFHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPV---IDVTQFGFFKL 109
F ++GMR K+ + Y+ + + + K + + + +D+ F
Sbjct: 478 FDEIGMRLCKKIITQQYHDFMCFNSVTFSKSXGWKFLSTSQANCDIQLNVDLAPFSSVTS 299
Query: 110 LGKGVLPQNQPFVVKTKLISK 130
LGKG+ N+P + + K ISK
Sbjct: 298 LGKGMRTSNKPLLGENKRISK 236
>TC81693
Length = 1012
Score = 28.5 bits (62), Expect = 1.0
Identities = 15/35 (42%), Positives = 19/35 (53%)
Frame = -3
Query: 14 HVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKY 48
HV GHGR H KHP GN G + +++ KY
Sbjct: 530 HVYKGHGR---HNKHPWKTGNGG--NGSKMVLQKY 441
>TC81272 similar to PIR|T05225|T05225 extensin homolog F17I5.160 -
Arabidopsis thaliana, partial (3%)
Length = 757
Score = 27.7 bits (60), Expect = 1.7
Identities = 20/53 (37%), Positives = 24/53 (44%), Gaps = 7/53 (13%)
Frame = -2
Query: 20 GRIGKHRKHPG---GR----GNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLR 65
GR G+HRKH G GR G A G H H+ G+ G R H+ R
Sbjct: 399 GRAGEHRKHQGRAEGRRKHQGRAEGRHWHQ-----------GRAGERQRHRDR 274
Score = 26.2 bits (56), Expect = 5.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Frame = -2
Query: 6 KKNRKKRGHVSAGHGRIGKHRKHPG-------GRGNAGGMHHHRILFDKYHPGYFG 54
+++R + G R G+HRKH G +G A HR ++H G +G
Sbjct: 291 QRHRDRAGEHRKRQDRAGEHRKHQGRAEEHRKHQGQAEEHRWHRGRAGEHHRGRWG 124
>TC88014 similar to GP|15215786|gb|AAK91438.1 AT3g43520/T18D12_90
{Arabidopsis thaliana}, partial (44%)
Length = 1052
Score = 26.9 bits (58), Expect = 3.0
Identities = 19/65 (29%), Positives = 28/65 (42%)
Frame = -1
Query: 4 RFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHK 63
RFK NR+++ + +G+ H HP N L+DK+ P + K FH
Sbjct: 944 RFKHNREQKRAMCVNNGQTKVHIYHPYFTTNV-------YLYDKHKPWVYSK--NPKFHN 792
Query: 64 LRNKF 68
R F
Sbjct: 791 KRGLF 777
>BG645618 similar to GP|18158619|gb WRKY-like drought-induced protein {Retama
raetam}, partial (37%)
Length = 747
Score = 26.6 bits (57), Expect = 3.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 80 SLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGV 114
+L + KE AL + +P +D+T+ ++LLG G+
Sbjct: 602 ALSSRTAKEDALLSDLSPCVDITEPAEYRLLG*GL 706
>TC81307 weakly similar to GP|4335772|gb|AAD17449.1| unknown protein
{Arabidopsis thaliana}, partial (31%)
Length = 1171
Score = 26.6 bits (57), Expect = 3.9
Identities = 13/24 (54%), Positives = 18/24 (74%)
Frame = -3
Query: 4 RFKKNRKKRGHVSAGHGRIGKHRK 27
R +KN+KKRG+ +G GR GK R+
Sbjct: 407 RERKNKKKRGNKRSGKGR-GKSRE 339
>TC88887 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (18%)
Length = 1681
Score = 25.4 bits (54), Expect = 8.7
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = -2
Query: 16 SAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVG 57
+A G G PGG G GGM HPG FG G
Sbjct: 1101 TANRGGFGGGPGGPGGPGGPGGM----------HPGGFGGGG 1006
>TC84613 similar to GP|10176939|dbj|BAB10088. DNAJ-like protein {Arabidopsis
thaliana}, partial (10%)
Length = 628
Score = 25.4 bits (54), Expect = 8.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 11 KRGHVSAGHGR--IGKHRKHPGGRGNAGGMHHHRIL 44
+R HV HG +G H H + GG HH +L
Sbjct: 147 RRNHVYRTHGGGGMGHHHHHQRPEVHGGGGHHLMLL 254
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.142 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,637,713
Number of Sequences: 36976
Number of extensions: 69181
Number of successful extensions: 378
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of query: 147
length of database: 9,014,727
effective HSP length: 87
effective length of query: 60
effective length of database: 5,797,815
effective search space: 347868900
effective search space used: 347868900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC126783.2