TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126782.2 - phase: 0 /pseudo
         (912 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi...    64  3e-10
BG644690 weakly similar to GP|18542179|gb putative pol protein {...    35  0.13
AW687376                                                               33  0.65
TC85518 similar to PIR|T45902|T45902 inorganic pyrophosphatase-l...    31  2.5
BQ150170                                                               30  3.2
CA917364                                                               30  4.2
AL367580                                                               30  5.5
TC85193 similar to GP|14423502|gb|AAK62433.1 Unknown protein {Ar...    30  5.5
BI270589 similar to PIR|C96829|C96 unknown protein F19K16.21 [im...    30  5.5
TC89196 similar to GP|19401700|gb|AAL87667.1 transcription facto...    30  5.5
TC90833 similar to PIR|T05154|T05154 hypothetical protein F18E5....    29  7.2
TC79668 similar to GP|9955513|emb|CAC05452.1 putative protein {A...    29  7.2
TC77274 similar to GP|22136956|gb|AAM91707.1 unknown protein {Ar...    29  9.3

>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
           partial (9%)
          Length = 675

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 55/144 (38%), Positives = 69/144 (47%)
 Frame = +2

Query: 446 LFGPCGFLDIKKNLTVLLRGIKPDL*VMVQVNRLALTMEKLLAQL*NQLLFAQFSALLHP 505
           L    GF+++KK    LL  +KPD  + V V  L +   KL    *N  L   FS LL  
Sbjct: 182 LLAASGFIELKKTQMDLLTNLKPD*WLRVSVKHLDVITLKLSLL**NLSLSGSFSPLLSL 361

Query: 506 DLGKFISWMSRMLFFMVN*KKQCTCTNLWDLKILKTPIMYAFFANHSMGLNKLLELGVSD 565
             GKF   +S M F MV  K++C C NL DLK+L   +  A   NHSM  +K    G+  
Sbjct: 362 INGKFNKLISTMPF*MVFFKRKCICLNLRDLKLL-INLWCAS*TNHSMA*SKHHVHGMRX 538

Query: 566 LPTTCHLLVFLKANVITLFSCTRK 589
            P     LV LK  VI  +  T K
Sbjct: 539 *PVHKFSLVSLKVVVIHHYLSTIK 610


>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
           partial (22%)
          Length = 629

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 25/77 (32%), Positives = 37/77 (47%)
 Frame = -3

Query: 502 LLHPDLGKFISWMSRMLFFMVN*KKQCTCTNLWDLKILKTPIMYAFFANHSMGLNKLLEL 561
           LLH        WM R+   M   K++C  +NL DLK+ +  IM +    H M  +KL E 
Sbjct: 306 LLHSWGSSCTKWM*RVHLLMEISKRRCLSSNLLDLKMQRYQIMCSD*IRHYMV*SKLQEH 127

Query: 562 GVSDLPTTCHLLVFLKA 578
           G+    + C  +V  +A
Sbjct: 126 GMKGCQSFC*RMVSKEA 76


>AW687376 
          Length = 400

 Score = 32.7 bits (73), Expect = 0.65
 Identities = 19/58 (32%), Positives = 32/58 (54%), Gaps = 1/58 (1%)
 Frame = -2

Query: 110 LKN*EHTSTHNFKEKLKQFNVTTAVNMSIVIFKK-CVKLMELFFVCLVLTHLLKMVNL 166
           +K  E    HN +    Q + T ++++SI+IF   CV LM  +F+C ++ H  K+  L
Sbjct: 399 IKMIECIKLHNHQHLPSQHH-TNSISLSIIIFSSNCVSLM*YYFICNIVQH*HKITQL 229


>TC85518 similar to PIR|T45902|T45902 inorganic pyrophosphatase-like protein
           - Arabidopsis thaliana, partial (87%)
          Length = 1620

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +2

Query: 298 LNLIHTLS*TMSCPLILYNI*WTK-PKLAHLILNWL-ISQTKSLLLVQTHQISPHLHNLT 355
           L LIH ++* +   L L++I W K  K A L +NW   +    L+   THQ+S H+  + 
Sbjct: 713 LLLIHGMT*RLDQELHLFSIVWLKLAKEARLNMNWTRKADLLRLIGFFTHQLSIHITMVL 892

Query: 356 PLVPSNKIFLPYFN 369
              P  K+ +P+ +
Sbjct: 893 FQEPFVKMKIPWMS 934


>BQ150170 
          Length = 994

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +1

Query: 568 TTCHLLVFLKANVITLFSCTRKTLIWHIFYSRLMILF 604
           T  HL   LK  V+TL     KTLIW IF+   +ILF
Sbjct: 10  THSHLHFHLK*LVLTLNIIYFKTLIWLIFFPLFLILF 120


>CA917364 
          Length = 699

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +1

Query: 278 LFVVMSYL-MKILSHMQSCTFLNLIHTLS*TMSCPLILYNI*WTKPKLAHLILNWLISQT 336
           ++V +S L +K +SH+    ++ +       + CPL+L+ + W            LI   
Sbjct: 262 IWVSLSRLSLKRISHLSFMHYVGVWSLFRVLLVCPLLLWRL-WPSV---------LILLE 411

Query: 337 KSLLLVQTHQISPHLHNLTPLVPSNKIFLPYFNQL 371
           + +  V  HQ++PH  N+   V   ++F P+  QL
Sbjct: 412 RKIAGVHGHQVAPHPQNMH--VYFGRVFKPFLLQL 510


>AL367580 
          Length = 479

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = -2

Query: 59  VCCHLIFYIVMYGPLLF*VQLVTNIMFFSWIII-----QIFCGLFQCHIN 103
           +CC  I Y+V++G LL       N+  F W+ +     +  C  F C IN
Sbjct: 391 ICCQNIIYVVIFGDLL-------NVPLFPWLHLFDKCKRCIC*HFVCIIN 263


>TC85193 similar to GP|14423502|gb|AAK62433.1 Unknown protein {Arabidopsis
           thaliana}, partial (73%)
          Length = 1351

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (63%)
 Frame = +2

Query: 397 TPMLQNPLYLGTLCLHLKTQIGKWSWMM 424
           +P+ QNP +   LC +L  ++ KW W++
Sbjct: 68  SPISQNPNFFSFLC*NLHFELKKWLWLL 151


>BI270589 similar to PIR|C96829|C96 unknown protein F19K16.21 [imported] -
           Arabidopsis thaliana, partial (20%)
          Length = 651

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -2

Query: 273 CQIKLLFVVMSYLMKILSHMQSCTFLNLIHTLS-----*TMSCPLIL 314
           C ++LL V +SY+  +   + S TFL++   L       T SCPL L
Sbjct: 566 CLLQLLLVFLSYVSNLFLKLSSTTFLSVSFLLCRKIFLPTFSCPLSL 426


>TC89196 similar to GP|19401700|gb|AAL87667.1 transcription factor RAU1
           {Oryza sativa}, partial (63%)
          Length = 1312

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 24/105 (22%), Positives = 53/105 (49%), Gaps = 6/105 (5%)
 Frame = -3

Query: 501 ALLHPDLGKFISWMSRMLFFMVN*KKQCTCTNLWDLKILKTPIMYAFFANHSMGLNK--L 558
           A+L  +LG+   W+    ++    K     +  ++++ + +P++ AFF   ++ L++  L
Sbjct: 875 AILEEELGRLK*WVKPSFWYP---KSTF*VSKAFEVENMNSPLLEAFFGALNVELSQ*SL 705

Query: 559 LELGVSDLPTTCHLLVFLKANVITLF----SCTRKTLIWHIFYSR 599
           ++LG+ D        +FL   ++  F    SC+  T+ WH+  +R
Sbjct: 704 VKLGM*DFVIQLSFPMFL---LLIQFA*RTSCSFSTITWHLDRAR 579


>TC90833 similar to PIR|T05154|T05154 hypothetical protein F18E5.80 -
           Arabidopsis thaliana, partial (19%)
          Length = 803

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 29/108 (26%), Positives = 52/108 (47%), Gaps = 8/108 (7%)
 Frame = -3

Query: 187 HLHFGTML*KWQHIS*IFYQAKLLILSHLLKCCITKILLTITYECLV---VYVFLSFLHQ 243
           HL F  +  K+  +  IF  + L +LS   K  +  I   I+   ++   V +F  FLH 
Sbjct: 660 HLLFYVIWEKFIPVKHIFKNS-LTLLSLCHKAMLNTIFNNISPFLIIHIKVLIFNHFLHN 484

Query: 244 KYTNF----NLVPQNVCFLRIRQIIEAINV*IYCQIKLLF-VVMSYLM 286
             ++     NL+   +CFL+I   I  I++   C +K +  +++S+ M
Sbjct: 483 MISSIIQIINLIISFMCFLKIIFKIHIIHIINRCHLKFIHNLIISFFM 340


>TC79668 similar to GP|9955513|emb|CAC05452.1 putative protein {Arabidopsis
           thaliana}, partial (75%)
          Length = 757

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -1

Query: 116 TSTHNFKEKLK---QFNVTTAVNMSIVIFKKCVKLMELFFVCLVL 157
           TS   FK+ L    QFN+   +   + I+K CV L++ FF+CL L
Sbjct: 583 TSL*TFKDSLLLACQFNIC*LL---LNIYKPCVNLLQQFFLCLFL 458


>TC77274 similar to GP|22136956|gb|AAM91707.1 unknown protein {Arabidopsis
           thaliana}, partial (80%)
          Length = 2013

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 32/124 (25%), Positives = 56/124 (44%), Gaps = 15/124 (12%)
 Frame = +2

Query: 32  ENYILIFVIHVLLVNMLN--------CLS*I-LIIEVCCHLIFYIVMYGPLLF*VQLVTN 82
           E+  L+ +I VLLV ++         CL+ I     +CC L FY+V   P L       N
Sbjct: 476 ESLDLVIMIQVLLVLVVLS*F*V*FLCLTKIGFRFWLCCFLYFYVVKVNPWL----SCDN 643

Query: 83  IMFFSWIIIQIFCGLFQCHINP------KFIQFLKN*EHTSTHNFKEKLKQFNVTTAVNM 136
            +F+ ++I   F      + NP      +F  F  N ++    +  +++  +NV+  ++ 
Sbjct: 644 ALFYCFLI--EFTNRDLSNSNPLR*T*TRFYLFFNNLKNIYKKHSFQQINTYNVSLHLSF 817

Query: 137 SIVI 140
            IVI
Sbjct: 818 VIVI 829


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.346    0.153    0.515 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,631,711
Number of Sequences: 36976
Number of extensions: 635668
Number of successful extensions: 7349
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3132
Number of HSP's successfully gapped in prelim test: 511
Number of HSP's that attempted gapping in prelim test: 4045
Number of HSP's gapped (non-prelim): 3999
length of query: 912
length of database: 9,014,727
effective HSP length: 105
effective length of query: 807
effective length of database: 5,132,247
effective search space: 4141723329
effective search space used: 4141723329
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 63 (28.9 bits)