BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126780.8 - phase: 0 /pseudo
(172 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC83959 similar to GP|21593908|gb|AAM65873.1 pore protein homolo... 221 1e-58
TC80862 similar to PIR|T06471|T06471 core protein - garden pea, ... 86 6e-18
TC89302 similar to PIR|T06471|T06471 core protein - garden pea, ... 81 2e-16
BG451448 similar to PIR|T06471|T064 core protein - garden pea, p... 70 3e-13
AJ501126 weakly similar to PIR|T48077|T48 hypothetical protein F... 42 2e-04
TC87892 similar to PIR|S71194|S71194 mitochondrial inner membran... 29 1.1
TC88324 similar to PIR|F86238|F86238 protein T10O24.11 [imported... 29 1.1
TC85370 similar to GP|6143866|gb|AAF04413.1| hypothetical protei... 28 1.4
TC92102 similar to GP|9294366|dbj|BAB02263.1 transcription or sp... 27 3.1
TC85784 similar to GP|15131688|emb|CAC48323. 2-Cys peroxiredoxin... 27 4.1
TC85783 homologue to GP|15131688|emb|CAC48323. 2-Cys peroxiredox... 27 4.1
TC86693 similar to SP|Q9SP35|IM17_ARATH Mitochondrial import inn... 27 4.1
TC90361 similar to PIR|S35701|S35701 translation elongation fact... 27 5.3
TC91787 similar to PIR|H84687|H84687 legumin-like protein [impor... 26 9.1
TC87919 similar to PIR|H96696|H96696 protein F1N21.16 [imported]... 26 9.1
>TC83959 similar to GP|21593908|gb|AAM65873.1 pore protein homolog
{Arabidopsis thaliana}, partial (73%)
Length = 725
Score = 221 bits (562), Expect = 1e-58
Identities = 113/179 (63%), Positives = 136/179 (75%), Gaps = 7/179 (3%)
Frame = +1
Query: 1 MNSNSNLETRTLLDELSDFNKGGLFDFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTVI 60
+ ++S +ETR LLDE+ F++ GLFD GHPL+NRIAESFVKAAGIGAVQAVSREAYFT I
Sbjct: 43 LKTSSEVETRALLDEIRSFDRKGLFDLGHPLLNRIAESFVKAAGIGAVQAVSREAYFTAI 222
Query: 61 EGTGIDNAGGMPPEISGAKKNRFH-GLRDQ------Q*IY*GNGKESFQWGLAAGLYSGL 113
+G +D G +P ++S K R GLR + + GKES QWG+AAG+YSGL
Sbjct: 223 DGHKVDKGGVIPQDVSPTNKRRLPAGLRGETSNKSLDAMVINTGKESLQWGVAAGIYSGL 402
Query: 114 TYGMKEARGTHDWKNSAVAGAITGAALACTSDNTSHEQIAQCAITGAAISTAANLLTGI 172
TYG+KEARG HDWKNSAVAGAITGA LA T ++++HE + QCAITGAAIST ANLL GI
Sbjct: 403 TYGLKEARGAHDWKNSAVAGAITGATLALTLEDSTHEHVVQCAITGAAISTVANLLKGI 579
>TC80862 similar to PIR|T06471|T06471 core protein - garden pea, partial
(97%)
Length = 611
Score = 86.3 bits (212), Expect = 6e-18
Identities = 50/148 (33%), Positives = 75/148 (49%)
Frame = +2
Query: 24 LFDFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTVIEGTGIDNAGGMPPEISGAKKNRF 83
+ D G+PL+N + F+K + A +A++ + Y V +G+ + + K F
Sbjct: 83 VIDMGNPLLNLTVDGFLKIGAVAATRALAEDTYHIVRKGSVSSS------DFEKTLKKTF 244
Query: 84 HGLRDQQ*IY*GNGKESFQWGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACT 143
KE WG AG+Y G YG++ RGT DWKN+ GA+TGA ++
Sbjct: 245 --------------KEGAYWGAIAGVYVGTEYGVQRIRGTRDWKNATFGGAVTGALVSAA 382
Query: 144 SDNTSHEQIAQCAITGAAISTAANLLTG 171
S N ++I AITGAAI+TAA + G
Sbjct: 383 S-NEKADKIVIGAITGAAIATAAEFING 463
>TC89302 similar to PIR|T06471|T06471 core protein - garden pea, partial
(97%)
Length = 631
Score = 80.9 bits (198), Expect = 2e-16
Identities = 46/146 (31%), Positives = 74/146 (50%)
Frame = +3
Query: 24 LFDFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTVIEGTGIDNAGGMPPEISGAKKNRF 83
+ D G+P +N + F+K + A +A++ + + V +G+ N F
Sbjct: 129 VIDMGNPFLNLAVDGFLKIGTVAATRALAEDTFHIVRKGS--------------VSSNDF 266
Query: 84 HGLRDQQ*IY*GNGKESFQWGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACT 143
+ KE WG G+Y G YG++ RGT DWKN+ + GA+TGA ++
Sbjct: 267 EKTLKKM------CKEGAYWGAIGGVYVGTEYGVERIRGTRDWKNAMIGGAVTGALVSAV 428
Query: 144 SDNTSHEQIAQCAITGAAISTAANLL 169
++N ++IA AITGAAI+TAA +
Sbjct: 429 NNN-KKDKIAVDAITGAAIATAAEFI 503
>BG451448 similar to PIR|T06471|T064 core protein - garden pea, partial (45%)
Length = 663
Score = 70.5 bits (171), Expect = 3e-13
Identities = 35/74 (47%), Positives = 48/74 (64%)
Frame = -3
Query: 98 KESFQWGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACTSDNTSHEQIAQCAI 157
K++F+ G AG+Y G YG++ RGT DWKN+ GA+TGA + S N ++I AI
Sbjct: 367 KKTFKEGAIAGVYVGTEYGVQRIRGTRDWKNATFGGAVTGAXVXAAS-NEKADKIVIGAI 191
Query: 158 TGAAISTAANLLTG 171
TGAAI+TAA + G
Sbjct: 190 TGAAIATAAEFING 149
>AJ501126 weakly similar to PIR|T48077|T48 hypothetical protein F26K9.310 -
Arabidopsis thaliana, partial (88%)
Length = 655
Score = 41.6 bits (96), Expect = 2e-04
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +1
Query: 102 QWGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALA 141
Q GL AG++S G+K+ RG +DW N + GA+ GA +A
Sbjct: 370 QCGLVAGVFSITRCGVKKYRGRNDWVNGLIGGAVAGATVA 489
>TC87892 similar to PIR|S71194|S71194 mitochondrial inner membrane protein -
Arabidopsis thaliana, partial (83%)
Length = 813
Score = 28.9 bits (63), Expect = 1.1
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 96 NGKESFQWGLAAG----LYSGLTYGMKEARGTHDWKNSAVAGAITGA 138
+G WG G LY+G+ G++ R D NS AG TGA
Sbjct: 364 SGHSGRTWGNRVGIIGLLYAGIESGIEAVRDVDDVWNSVAAGLGTGA 504
>TC88324 similar to PIR|F86238|F86238 protein T10O24.11 [imported] -
Arabidopsis thaliana, partial (95%)
Length = 815
Score = 28.9 bits (63), Expect = 1.1
Identities = 11/32 (34%), Positives = 17/32 (52%)
Frame = -3
Query: 118 KEARGTHDWKNSAVAGAITGAALACTSDNTSH 149
K RG DW + + A+ G++ C +TSH
Sbjct: 144 KRERGMSDWNANQLGRAVRGSSSNCKESSTSH 49
>TC85370 similar to GP|6143866|gb|AAF04413.1| hypothetical protein
{Arabidopsis thaliana}, partial (51%)
Length = 1261
Score = 28.5 bits (62), Expect = 1.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 109 LYSGLTYGMKEARGTHDWKNSAVAGAITGAALA 141
++S +++AR HD N+ VAG TGAA++
Sbjct: 717 VFSAAECVVEKARAKHDITNTFVAGCTTGAAIS 815
>TC92102 similar to GP|9294366|dbj|BAB02263.1 transcription or splicing
factor-like protein {Arabidopsis thaliana}, partial (4%)
Length = 426
Score = 27.3 bits (59), Expect = 3.1
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = -1
Query: 6 NLETRTLLDELSDFNKGGLFDFGHPLVNRIAESF-----VKAAGIGAVQAVS 52
NLE+ LL+ + D L F L+NRI SF +K A IG V A++
Sbjct: 210 NLESFWLLEGVVDVGSRHLVRFRSRLLNRILRSFTYPITMKEAEIGIVFAIT 55
>TC85784 similar to GP|15131688|emb|CAC48323. 2-Cys peroxiredoxin {Pisum
sativum}, partial (86%)
Length = 1114
Score = 26.9 bits (58), Expect = 4.1
Identities = 11/29 (37%), Positives = 18/29 (61%)
Frame = +2
Query: 17 SDFNKGGLFDFGHPLVNRIAESFVKAAGI 45
+D GGL D +PLV+ + +S K+ G+
Sbjct: 605 TDRKSGGLGDLNYPLVSDVTKSISKSYGV 691
>TC85783 homologue to GP|15131688|emb|CAC48323. 2-Cys peroxiredoxin {Pisum
sativum}, partial (91%)
Length = 1136
Score = 26.9 bits (58), Expect = 4.1
Identities = 11/29 (37%), Positives = 18/29 (61%)
Frame = +3
Query: 17 SDFNKGGLFDFGHPLVNRIAESFVKAAGI 45
+D GGL D +PLV+ + +S K+ G+
Sbjct: 513 TDRKSGGLGDLNYPLVSDVTKSISKSYGV 599
>TC86693 similar to SP|Q9SP35|IM17_ARATH Mitochondrial import inner membrane
translocase subunit TIM17. [Mouse-ear cress], partial
(62%)
Length = 1047
Score = 26.9 bits (58), Expect = 4.1
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = +2
Query: 103 WGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALA 141
WG GL+S M R D NS VAGA TG LA
Sbjct: 266 WG---GLFSTFDCTMVYVRQKEDPWNSIVAGAATGGFLA 373
>TC90361 similar to PIR|S35701|S35701 translation elongation factor EF-G
chloroplast - soybean, partial (15%)
Length = 790
Score = 26.6 bits (57), Expect = 5.3
Identities = 14/32 (43%), Positives = 18/32 (55%)
Frame = +1
Query: 30 PLVNRIAESFVKAAGIGAVQAVSREAYFTVIE 61
PLV+R+ F A +GA QA RE+ V E
Sbjct: 622 PLVDRLKREFKVEANVGAPQANYRESISEVTE 717
>TC91787 similar to PIR|H84687|H84687 legumin-like protein [imported] -
Arabidopsis thaliana, partial (30%)
Length = 495
Score = 25.8 bits (55), Expect = 9.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 123 THDWKNSAVAGAITGAALAC 142
TH WK V GAIT ++ C
Sbjct: 189 THGWKFFGVEGAITNSSAGC 248
>TC87919 similar to PIR|H96696|H96696 protein F1N21.16 [imported] -
Arabidopsis thaliana, partial (58%)
Length = 1478
Score = 25.8 bits (55), Expect = 9.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 108 GLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACTSDNTSHEQIAQCA 156
GL S G E R H+++ +V GA+ + AC + + A+CA
Sbjct: 927 GLCSHAGCGRPETR-KHEFRRCSVCGAVNYCSRACQALDWKFRHKAECA 1070
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,057,740
Number of Sequences: 36976
Number of extensions: 41094
Number of successful extensions: 175
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of query: 172
length of database: 9,014,727
effective HSP length: 89
effective length of query: 83
effective length of database: 5,723,863
effective search space: 475080629
effective search space used: 475080629
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC126780.8