TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126018.3 + phase: 0 
         (387 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644701 EGAD|148100|1 NADH dehydrogenase ND2 {Nicotiana tabacum...   263  8e-71
TC80553 homologue to SP|Q9BBP3|NU4C_LOTJA NADH-plastoquinone oxi...    61  6e-10
AW981338 similar to GP|13384217|gb NADH subunit 2 {Chrysomya chl...    60  2e-09
CB065271 homologue to EGAD|148100|157 NADH dehydrogenase ND2 {Ni...    44  1e-04
TC90579 homologue to GP|18031688|gb|AAK50367.1 NADH dehydrogenas...    32  0.32
TC92394 homologue to SP|P15958|NU5C_VICFA NADH-plastoquinone oxi...    31  0.92
BQ148341 similar to GP|17529106|gb| putative clathrin coat assem...    29  3.5
TC79436 similar to GP|18252183|gb|AAL61924.1 putative mitochondr...    28  6.0

>BG644701 EGAD|148100|1 NADH dehydrogenase ND2 {Nicotiana tabacum}, complete
          Length = 689

 Score =  263 bits (672), Expect = 8e-71
 Identities = 131/136 (96%), Positives = 132/136 (96%)
 Frame = -3

Query: 1   MAITEFLLFILTATLGGMFLCSANDLITIFVALECFSLCSYLLSGYTKKDVRSNEATMKY 60
           MAITEFLLF+LTATLGGMFLC ANDLITIFVA ECFSLCSYLLSGYTKKDVRSNEATMKY
Sbjct: 609 MAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKY 430

Query: 61  LLMGGASSSILVHGFSWLYGLSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFK 120
           LLMGGASSSILVHGFSWLYG SGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFK
Sbjct: 429 LLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFK 250

Query: 121 LSLAPSHQWTPDVYEG 136
           LS APSHQWTPDVYEG
Sbjct: 249 LSPAPSHQWTPDVYEG 202


>TC80553 homologue to SP|Q9BBP3|NU4C_LOTJA NADH-plastoquinone oxidoreductase
           chain 4  chloroplast (EC 1.6.5.3). {Lotus japonicus},
           partial (74%)
          Length = 1273

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 80/363 (22%), Positives = 147/363 (40%), Gaps = 16/363 (4%)
 Frame = +1

Query: 20  LCSANDLITIFVALECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSW-- 77
           L S  D++  F+  E   +  Y+L        R   +T K++L     S  L+ G     
Sbjct: 19  LFSXRDILLFFIMWEXELIPVYILLAMWGGKKRLYSST-KFILYTAGGSVFLLMGILGIG 195

Query: 78  LYGLSGGEIELQEIVNGLINTQMYNSPGISIALIFIT---VGIGFKLSLAPSHQWTPDVY 134
           LYG +   +  + + N         S  +++ +I  T   +    KL + P H W PD +
Sbjct: 196 LYGSNEPTLNFETLTN--------QSYPVALEIILYTAFLIAFAVKLPIIPLHTWLPDTH 351

Query: 135 EGSPTPVVAFLSVTSKVAASASATRIFDILFYFSSNEWHLLLEILAILSMLLGNLIAITQ 194
             +       L+       +    RI   LF  + + +   L IL  + ++     +  Q
Sbjct: 352 GEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQ 531

Query: 195 TSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTG 254
            ++K+ +AYSS+  +G++I+G I   S+ G    I  ++ +     G     + F   T 
Sbjct: 532 RNLKKRIAYSSVSHMGFIILG-IGSISDTGLNGAILQIISH-----GFIGAALFFLAGTS 693

Query: 255 TDNIR-----DYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGWQAGLYFL 309
            D +R     +  G+    P +     +  ++   LP ++GF  +L +F+    +  Y  
Sbjct: 694 YDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLF 873

Query: 310 VSIGLITSVVSI------YYYLKIIKLLMTGRNQEITPHVRNYRRSPVRSNNSIELSMII 363
           +   LIT V +I       Y L I++ +  G     TP+   +   P      I +S++I
Sbjct: 874 MMKILITFVTAIGMILTPIYLLSILRQMFYGYKFFNTPNSYFFDSGP--RELFISISILI 1047

Query: 364 CVI 366
            VI
Sbjct: 1048PVI 1056


>AW981338 similar to GP|13384217|gb NADH subunit 2 {Chrysomya chloropyga},
           partial (49%)
          Length = 551

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 50/184 (27%), Positives = 84/184 (45%)
 Frame = +1

Query: 111 IFITVGIGFKLSLAPSHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDILFYFSSN 170
           I I   +  K   AP H   P++ EG        L    K+A          ++ Y   N
Sbjct: 10  IIILSSLLLKSGAAPFHF*FPNIMEGLS*NNSLILIT*QKIAPLI-------LISYIIVN 168

Query: 171 EWHLLLEILAILSMLLGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMIT 230
               L+    I+S+L+G+L  + QTS+++++A+SSI  +G +I  I + +          
Sbjct: 169 S---LIIFSIIISVLIGSLGGLNQTSLRKLIAFSSINHLG*IIAAIQLRER--------I 315

Query: 231 YMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAG 290
            ++++I  +L TF  I  F +     ++     ++     +   + L LLSLGGLPP  G
Sbjct: 316 *LIYFILYSLLTFNIIYFFNIYK-VSHMNQLFSIFFYSKIIKFFMFLNLLSLGGLPPFLG 492

Query: 291 FFGK 294
           FF K
Sbjct: 493 FFSK 504


>CB065271 homologue to EGAD|148100|157 NADH dehydrogenase ND2 {Nicotiana
           tabacum}, partial (32%)
          Length = 672

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -3

Query: 119 FKLSLAPSHQWTPDVYEG 136
           FKLSLAPSHQWTPDVYEG
Sbjct: 670 FKLSLAPSHQWTPDVYEG 617


>TC90579 homologue to GP|18031688|gb|AAK50367.1 NADH dehydrogenase {Medicago
           sativa}, partial (25%)
          Length = 286

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 27/94 (28%), Positives = 42/94 (43%)
 Frame = +2

Query: 266 TKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGWQAGLYFLVSIGLITSVVSIYYYL 325
           TK  FL  +L+LC     G+PP A F+ K  +    W     F + I   T+ ++ +Y  
Sbjct: 26  TKTAFLIGTLSLC-----GIPPFACFWSKDEILNDSWLYSPIFAI-IACSTAGLTSFYMF 187

Query: 326 KIIKLLMTGRNQEITPHVRNYRRSPVRSNNSIEL 359
           +I  L+  G    +  H +N+      S  SI L
Sbjct: 188 RIYLLVFEG---YLNVHFQNFNGKKNSSFYSISL 280


>TC92394 homologue to SP|P15958|NU5C_VICFA NADH-plastoquinone oxidoreductase
           chain 5  chloroplast (EC 1.6.5.3). [Broad bean] {Vicia
           faba}, partial (22%)
          Length = 646

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 15/41 (36%), Positives = 26/41 (62%)
 Frame = +1

Query: 6   FLLFILTATLGGMFLCSANDLITIFVALECFSLCSYLLSGY 46
           +L F  T+ LG   L ++++LI +++  E   +CSYLL G+
Sbjct: 523 YLSFFNTSMLG---LVTSSNLIQVYIFWELVGMCSYLLIGF 636


>BQ148341 similar to GP|17529106|gb| putative clathrin coat assembly protein
           {Arabidopsis thaliana}, partial (27%)
          Length = 678

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 230 TYMLFYISMNLGTFACIVLF 249
           T+++FY S+N+G F  I+LF
Sbjct: 309 TFVIFYFSLNMGCFGSILLF 368


>TC79436 similar to GP|18252183|gb|AAL61924.1 putative mitochondrial carrier
           protein {Arabidopsis thaliana}, partial (77%)
          Length = 1021

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/59 (23%), Positives = 29/59 (48%)
 Frame = +3

Query: 271 LALSLALCLLSLGGLPPLAGFFGKLHLFWCGWQAGLYFLVSIGLITSVVSIYYYLKIIK 329
           +++ +  CL++     P+A  FG+  + W       +++V  GL T V    Y + ++K
Sbjct: 126 ISVLITNCLIN-----PMAQSFGQTEINWDKLDKTKFYVVGAGLFTGVTVALYPVSVVK 287


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.326    0.142    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,227,839
Number of Sequences: 36976
Number of extensions: 179085
Number of successful extensions: 1393
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of query: 387
length of database: 9,014,727
effective HSP length: 98
effective length of query: 289
effective length of database: 5,391,079
effective search space: 1558021831
effective search space used: 1558021831
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)