TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126018.19 - phase: 0 
         (686 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC91500 similar to SP|Q9BBS8|RPOC_LOTJA DNA-directed RNA polymer...   328  3e-90
TC91909 homologue to PIR|S48842|S48842 DNA-directed RNA polymera...   276  1e-74
TC91608 similar to GP|14334894|gb|AAK59625.1 unknown protein {Ar...    31  1.8
BG645135 weakly similar to PIR|D84713|D84 probable dioxygenase [...    30  3.1
TC83590 similar to GP|9758365|dbj|BAB08866.1 GTP binding protein...    29  6.8

>TC91500 similar to SP|Q9BBS8|RPOC_LOTJA DNA-directed RNA polymerase beta'
           chain (EC 2.7.7.6). {Lotus japonicus}, partial (22%)
          Length = 1004

 Score =  328 bits (842), Expect = 3e-90
 Identities = 156/156 (100%), Positives = 156/156 (100%)
 Frame = +3

Query: 531 PISVPTQDMLIGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNS 590
           PISVPTQDMLIGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNS
Sbjct: 3   PISVPTQDMLIGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNS 182

Query: 591 YDAIGAYRQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIK 650
           YDAIGAYRQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIK
Sbjct: 183 YDAIGAYRQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIK 362

Query: 651 KEIRCIYIRTTVGHISFYREIEEAIQGFSRAYSYGI 686
           KEIRCIYIRTTVGHISFYREIEEAIQGFSRAYSYGI
Sbjct: 363 KEIRCIYIRTTVGHISFYREIEEAIQGFSRAYSYGI 470


>TC91909 homologue to PIR|S48842|S48842 DNA-directed RNA polymerase (EC
           2.7.7.6) beta chain - white mustard chloroplast, partial
           (14%)
          Length = 893

 Score =  276 bits (707), Expect = 1e-74
 Identities = 129/129 (100%), Positives = 129/129 (100%)
 Frame = +2

Query: 1   MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
           MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI
Sbjct: 506 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 685

Query: 61  FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK
Sbjct: 686 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 865

Query: 121 RLPSYIASL 129
           RLPSYIASL
Sbjct: 866 RLPSYIASL 892


>TC91608 similar to GP|14334894|gb|AAK59625.1 unknown protein {Arabidopsis
           thaliana}, partial (41%)
          Length = 888

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 25/104 (24%), Positives = 52/104 (49%), Gaps = 4/104 (3%)
 Frame = +2

Query: 223 GEEGSADNENENEWEDRKVGRRKNFLVRRMELVKHFIRTNI-EPEWMVLSLLPVLPPELR 281
           G+E +ADN++E E++D K   + N L+ +++++   +   + E E+        L  E++
Sbjct: 209 GDEDAADNDDEVEFDDMK--EKDNILLAKLDVIDKRLEEKLAELEYTFGRKGKALEEEIK 382

Query: 282 PIIQIDGGKLMSSDINELYRRVIYRNN---TLIDLLTTSRSTPG 322
            + +        +++ E  RR ++R      LID+  T + T G
Sbjct: 383 DLAE------ERNELTEKKRRPLFRKGFDVKLIDVNRTCKVTKG 496


>BG645135 weakly similar to PIR|D84713|D84 probable dioxygenase [imported] -
           Arabidopsis thaliana, partial (44%)
          Length = 812

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
 Frame = -3

Query: 573 SNNNSKYMKKKEPFFCNSYD-AIGAYRQKRINLDSPFWLRWRID----QCIMSSREVPIE 627
           S+NNSK MK   P+F   ++  I AY    I      W  W        CI      PI 
Sbjct: 585 SDNNSKIMKPNIPYFLGIFNHTISAYGW*FI------WFEWMRSNSKTNCIS-----PIS 439

Query: 628 VHYESFGTYYEIYGHYLVIRSIK--KEIRCIYIRTTVGHISFYREI 671
                 G+  EI+  +L I S+K    I  ++++TT     F ++I
Sbjct: 438 SLATKQGSIGEIHNFFL*ITSVKLFSYINILFMKTTDSMNHFIQDI 301


>TC83590 similar to GP|9758365|dbj|BAB08866.1 GTP binding protein-like
           {Arabidopsis thaliana}, partial (49%)
          Length = 1061

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 18/74 (24%), Positives = 35/74 (46%)
 Frame = -3

Query: 78  GDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIASLLDKPLKEL 137
           G ++   ++C +C +    S    ++ GY K ACP+  V++    P+ +    D+    L
Sbjct: 873 GTERRLLRYCFRCFLTD-SSSFSEHRFGYAKYACPLLFVFHPFPSPALLIDAQDESTFLL 697

Query: 138 EGLVYCDFSFARPV 151
           + +V   F   +PV
Sbjct: 696 DEVVGIPFVLMQPV 655


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.323    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,622,111
Number of Sequences: 36976
Number of extensions: 339923
Number of successful extensions: 1527
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of query: 686
length of database: 9,014,727
effective HSP length: 103
effective length of query: 583
effective length of database: 5,206,199
effective search space: 3035214017
effective search space used: 3035214017
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)