TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126018.13 - phase: 0 
         (320 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87006 homologue to SP|P06669|CYF_VICFA Apocytochrome F precurs...   442  e-124
TC90045 similar to SP|P49160|CEMA_SOYBN Chloroplast envelope mem...   144  5e-35
CA917961 homologue to GP|12325083|gb| hypothetical protein; 3218...    29  2.1
BG647765                                                               29  2.8

>TC87006 homologue to SP|P06669|CYF_VICFA Apocytochrome F precursor. [Broad
           bean] {Vicia faba}, partial (78%)
          Length = 1548

 Score =  442 bits (1136), Expect = e-124
 Identities = 227/253 (89%), Positives = 233/253 (91%), Gaps = 1/253 (0%)
 Frame = +1

Query: 69  EVPQA-VLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPE 127
           EVPQA   P    + +       ++ + L   KKGALNVGAVLILPEGFELAPPDRISPE
Sbjct: 1   EVPQAGTFPILYLKQLFEFLMICKLNKFLLMVKKGALNVGAVLILPEGFELAPPDRISPE 180

Query: 128 IKEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGG 187
           +KEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGG
Sbjct: 181 VKEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGG 360

Query: 188 NRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPE 247
           NRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPE
Sbjct: 361 NRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPE 540

Query: 248 LLVSEGESMKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKK 307
           LLVSEGESMKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKK
Sbjct: 541 LLVSEGESMKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKK 720

Query: 308 KQFEKVQLSEMNF 320
           KQFEKVQLSEMNF
Sbjct: 721 KQFEKVQLSEMNF 759


>TC90045 similar to SP|P49160|CEMA_SOYBN Chloroplast envelope membrane
           protein. [Soybean] {Glycine max}, partial (94%)
          Length = 1076

 Score =  144 bits (363), Expect = 5e-35
 Identities = 70/70 (100%), Positives = 70/70 (100%)
 Frame = +1

Query: 1   MQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCH 60
           MQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCH
Sbjct: 865 MQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCH 1044

Query: 61  LANKPVDIEV 70
           LANKPVDIEV
Sbjct: 1045LANKPVDIEV 1074


>CA917961 homologue to GP|12325083|gb| hypothetical protein; 3218-172
           {Arabidopsis thaliana}, partial (17%)
          Length = 686

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 18/49 (36%), Positives = 25/49 (50%)
 Frame = +1

Query: 198 GSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGP 246
           G  SN++V +  A+ I  K + KE  G E ++ DAS   E     PP P
Sbjct: 217 GGGSNSSVNDGNASTIGPKSMDKEAFGTEASLKDASISIEKKSASPPSP 363


>BG647765 
          Length = 778

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = +2

Query: 50  ATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAV 109
           A  R    +CH+ N    +E+P A+  D +F+  + +  +  V + + N  K A +    
Sbjct: 218 AVNRAEKLSCHIQNMDGAVEMPDAM--DIIFQQALLVGTNAAVDEYMNNKDKSAESYSKA 391

Query: 110 LIL-------PEGFELAPPDRISPEIKEKI 132
           ++L        E   L PP  +  + +++I
Sbjct: 392 MLLLSFIVGEAENLPLNPPFSLLADDQKRI 481


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.140    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,492,962
Number of Sequences: 36976
Number of extensions: 107430
Number of successful extensions: 489
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of query: 320
length of database: 9,014,727
effective HSP length: 96
effective length of query: 224
effective length of database: 5,465,031
effective search space: 1224166944
effective search space used: 1224166944
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)