BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126014.4 + phase: 0
(91 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82520 99 4e-22
TC80751 weakly similar to GP|13161403|dbj|BAB33036. CPRD49 {Vign... 75 4e-15
CA919100 homologue to PIR|G90291|G902 endoglucanase precursor [i... 70 2e-13
BF643502 69 2e-13
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non... 69 4e-13
TC86499 54 8e-09
TC93136 50 2e-07
CA921530 49 3e-07
AW686588 47 1e-06
TC85561 weakly similar to GP|4530126|gb|AAD21872.1| receptor-lik... 47 2e-06
AW586297 weakly similar to GP|22002156|gb| putative reverse tran... 40 2e-04
BG453645 39 3e-04
BG453428 similar to PIR|S48032|S48 cim1 protein - soybean, parti... 36 0.003
BF645920 35 0.005
TC91233 weakly similar to PIR|T10205|T10205 hypothetical protein... 35 0.006
BG580262 34 0.008
BG454545 34 0.008
BE943274 29 0.27
TC82763 28 0.46
BF641805 similar to GP|21594695|gb| unknown {Arabidopsis thalian... 27 1.0
>TC82520
Length = 833
Score = 98.6 bits (244), Expect = 4e-22
Identities = 40/87 (45%), Positives = 61/87 (69%)
Frame = +2
Query: 2 VRDNLHRFGNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTS 61
+R +F ++AG+PR TH+FLQ++W A VW++WK+ N+R+F + + ++ VK+ S
Sbjct: 428 IRQFFIQFTSMAGSPRFTHSFLQIMWFASVWVLWKKRNNRVFQNSLSDPSTFVEQVKMHS 607
Query: 62 FLWLKANKLTSAFSYTDRWRDPLLCMG 88
FLWLK + T +FSY D W+ PLLCMG
Sbjct: 608 FLWLKFQQATFSFSYHDWWKHPLLCMG 688
>TC80751 weakly similar to GP|13161403|dbj|BAB33036. CPRD49 {Vigna
unguiculata}, partial (52%)
Length = 1156
Score = 75.1 bits (183), Expect = 4e-15
Identities = 38/87 (43%), Positives = 50/87 (56%)
Frame = +1
Query: 2 VRDNLHRFGNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTS 61
+ D+L + G RS + L ++W + +W+IWKE + IFN K V LL+ VKL S
Sbjct: 733 IPDHLIQLVQ*GGYSRSIRSTLLLVWFSYMWVIWKERSKMIFNQKKDHVHQLLEKVKLLS 912
Query: 62 FLWLKANKLTSAFSYTDRWRDPLLCMG 88
F WLKA T F Y R +PLLCMG
Sbjct: 913 F*WLKATNSTFPFDYHSRRLNPLLCMG 993
>CA919100 homologue to PIR|G90291|G902 endoglucanase precursor [imported] -
Sulfolobus solfataricus, partial (3%)
Length = 789
Score = 69.7 bits (169), Expect = 2e-13
Identities = 31/88 (35%), Positives = 48/88 (54%)
Frame = -2
Query: 1 MVRDNLHRFGNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLT 60
++ D+ +F + G +++ +FLQ+IW C W++W E N+ FN + LLD VK
Sbjct: 344 VLSDHFVQFVHSTGGNKASQSFLQLIWLLCAWVLWTERNNMCFNDSITPLPRLLDKVKYL 165
Query: 61 SFLWLKANKLTSAFSYTDRWRDPLLCMG 88
S WLKA + F W +PL C+G
Sbjct: 164 SLGWLKARNASFLFGTFSWWSNPLQCLG 81
>BF643502
Length = 631
Score = 69.3 bits (168), Expect = 2e-13
Identities = 29/67 (43%), Positives = 40/67 (59%)
Frame = -1
Query: 22 FLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANKLTSAFSYTDRWR 81
F+Q+IW CVW++W E N+ +FNH + LLD +KL S WLKA T F
Sbjct: 502 FMQLIWLLCVWVVWNERNNVMFNHVVTPIPCLLDKIKLLSLGWLKAKNATFVFGIQQGRS 323
Query: 82 DPLLCMG 88
+PL+C+G
Sbjct: 322 NPLVCLG 302
>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
retroelement reverse transcriptase {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 1262
Score = 68.6 bits (166), Expect = 4e-13
Identities = 34/83 (40%), Positives = 50/83 (59%), Gaps = 12/83 (14%)
Frame = +1
Query: 18 STHTFLQVI---WHAC---------VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWL 65
+++TF V WHA W+IWKE N+R+F + +L+D +KL SFLWL
Sbjct: 868 ASNTFYSVCQNGWHAKSFSFILQVNFWVIWKERNNRLFQNTVTAPFVLIDRIKLHSFLWL 1047
Query: 66 KANKLTSAFSYTDRWRDPLLCMG 88
K+ ++ A+SY D W++ LLCMG
Sbjct: 1048KSKQVGFAYSYLDWWKNSLLCMG 1116
>TC86499
Length = 702
Score = 54.3 bits (129), Expect = 8e-09
Identities = 30/39 (76%), Positives = 31/39 (78%)
Frame = +1
Query: 53 LLDSVKLTSFLWLKANKLTSAFSYTDRWRDPLLCMGARD 91
LLD+VKL SFLWLKAN LTSAFSYT W LLCMG RD
Sbjct: 442 LLDNVKLMSFLWLKAN*LTSAFSYTS-WCS-LLCMGVRD 552
>TC93136
Length = 722
Score = 49.7 bits (117), Expect = 2e-07
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 17 RSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLW-LKANKLTSAFS 75
RS + +IWHA +W+IWK N+RIF + +K + +++ +K+ S+ W L K F
Sbjct: 376 RSRTKGVWLIWHATIWVIWKGINNRIFKNISKAIDEIVEEIKVLSWRWSLTRLKCPPCFY 555
Query: 76 YTDRWRDPLLCM 87
Y W DP C+
Sbjct: 556 YEWCW-DPGDCV 588
>CA921530
Length = 793
Score = 49.3 bits (116), Expect = 3e-07
Identities = 18/42 (42%), Positives = 30/42 (70%)
Frame = -1
Query: 23 LQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLW 64
L +IWHA +W++WK N+RIFN++ E +++ VK+ S+ W
Sbjct: 601 LWLIWHATIWILWKAWNNRIFNNQAVEAEDIIEEVKVLSWRW 476
>AW686588
Length = 567
Score = 47.0 bits (110), Expect = 1e-06
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 4 DNLHRFGNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFN 44
D+ +F G R+ +F+Q+IW CVW++W E N+R+FN
Sbjct: 376 DHFIQFITCTGHTRARRSFMQLIWLLCVWMVWNERNNRLFN 498
>TC85561 weakly similar to GP|4530126|gb|AAD21872.1| receptor-like protein
kinase homolog RK20-1 {Phaseolus vulgaris}, partial (18%)
Length = 1549
Score = 46.6 bits (109), Expect = 2e-06
Identities = 25/52 (48%), Positives = 27/52 (51%)
Frame = +2
Query: 35 WKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANKLTSAFSYTDRWRDPLLC 86
WKE NSRIFN LL S+K S WLK +KL AF Y W LC
Sbjct: 1259 WKERNSRIFNDNMSSKDQLLASIKFHS*WWLKMHKLGFAFDYYYWWSMASLC 1414
>AW586297 weakly similar to GP|22002156|gb| putative reverse transcriptase
{Oryza sativa (japonica cultivar-group)}, partial (4%)
Length = 186
Score = 40.0 bits (92), Expect = 2e-04
Identities = 18/54 (33%), Positives = 27/54 (49%)
Frame = +1
Query: 10 GNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFL 63
G+ G + + + + W W+IWKE N+RIF K LL+ +KL L
Sbjct: 1 GSFPGLAKLRCSIMHLFWFTSSWVIWKERNARIFRAKESTHHQLLEKIKLPFLL 162
>BG453645
Length = 622
Score = 39.3 bits (90), Expect = 3e-04
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 25 VIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLW-LKANKLTSAFSYTDRWRDP 83
++WH +W++W + N IF +++ +K+ S W L+ + S F Y W +P
Sbjct: 222 LVWHTTIWVLWAKRNDLIFKGLNCVAEDVIEEIKVLS*RWMLERSSTPSCFFYEWSW-NP 398
Query: 84 LLCM 87
LC+
Sbjct: 399 RLCL 410
>BG453428 similar to PIR|S48032|S48 cim1 protein - soybean, partial (53%)
Length = 638
Score = 35.8 bits (81), Expect = 0.003
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 52 LLLDSVKLTSFLWLKANKLTSAFSYTDRWRDPLLCMGARD 91
+LL+ V F+ N +AFSY D WR+ LLCM R+
Sbjct: 503 ILLNQVT*VDFVLSLINNQLTAFSYNDGWRNCLLCMDVRE 622
>BF645920
Length = 631
Score = 35.0 bits (79), Expect = 0.005
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -3
Query: 23 LQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLW 64
L +I VW IW+ N+ IFN EV +++ VK+ S+ W
Sbjct: 626 LWLISTTTVWAIWRARNNIIFNEGIVEVDSMVEEVKVLSWRW 501
>TC91233 weakly similar to PIR|T10205|T10205 hypothetical protein
F25G13.120 - Arabidopsis thaliana, partial (18%)
Length = 964
Score = 34.7 bits (78), Expect = 0.006
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 29 ACVWLIWKETNSRIFNHKTKEVGLLLDSVKL 59
+C+W+I ++ NSR+ H + +LD +KL
Sbjct: 17 SCIWIILRDRNSRVLQHYENTINQILDKIKL 109
>BG580262
Length = 424
Score = 34.3 bits (77), Expect = 0.008
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 21 TFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANKLTSAF 74
T L IW+ + IW+ N IF + E+ +++ +KLTS WL A K F
Sbjct: 206 TELTFIWYVTIRKIWEVRNKIIFFLRRVEMEDIVEGIKLTS*RWLLAIKRGKLF 367
>BG454545
Length = 520
Score = 34.3 bits (77), Expect = 0.008
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 25 VIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLW 64
+I HA +W+I N RIF + ++V ++D +K+ ++ W
Sbjct: 101 LIRHAAIWVI*NTRNHRIFKNVVRDVYEIMDEIKVLAWKW 220
>BE943274
Length = 597
Score = 29.3 bits (64), Expect = 0.27
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 61 SFLWLKANKLTSAFSYTDRWRDPLLCMG 88
S WLK +T F W +PL+C+G
Sbjct: 331 SLWWLKVKHVTFVFGIQIWWSNPLMCLG 248
>TC82763
Length = 1376
Score = 28.5 bits (62), Expect = 0.46
Identities = 16/56 (28%), Positives = 26/56 (45%), Gaps = 1/56 (1%)
Frame = +1
Query: 32 WLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLK-ANKLTSAFSYTDRWRDPLLC 86
W + ETNS F + G L+ V +S LW + + + + Y +W L+C
Sbjct: 328 WTLKTETNSFHFMVLFHKYGSWLEGVNCSSSLWWRYLSSIDTGMGYMLQWAGSLVC 495
>BF641805 similar to GP|21594695|gb| unknown {Arabidopsis thaliana},
partial (43%)
Length = 665
Score = 27.3 bits (59), Expect = 1.0
Identities = 9/22 (40%), Positives = 15/22 (67%)
Frame = +2
Query: 69 KLTSAFSYTDRWRDPLLCMGAR 90
K++ +S+ D W+ PLLCM +
Sbjct: 23 KISFVYSFHDWWKHPLLCMSVQ 88
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.137 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,035,870
Number of Sequences: 36976
Number of extensions: 60600
Number of successful extensions: 467
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of query: 91
length of database: 9,014,727
effective HSP length: 67
effective length of query: 24
effective length of database: 6,537,335
effective search space: 156896040
effective search space used: 156896040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC126014.4