TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126011.4 + phase: 0 /pseudo
         (133 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC81992 weakly similar to PIR|T47841|T47841 hypothetical protein...    35  1e-06
TC87807 similar to GP|6175161|gb|AAF04887.1| unknown protein {Ar...    27  1.8
TC84839 similar to GP|19386827|dbj|BAB86205. hypothetical protei...    26  4.0
TC77688 similar to GP|6319165|gb|AAF07191.1| branched-chain amin...    25  8.9

>TC81992 weakly similar to PIR|T47841|T47841 hypothetical protein T2O9.150 -
           Arabidopsis thaliana, partial (3%)
          Length = 952

 Score = 35.4 bits (80), Expect(2) = 1e-06
 Identities = 16/30 (53%), Positives = 21/30 (69%)
 Frame = +2

Query: 67  KYLKVKNYLLHAIDRKIIETILEKNTLKKI 96
           K  K KN+L  AIDR ++ETIL+  T K+I
Sbjct: 608 KIFKAKNHLFQAIDRVVLETILKNETSKEI 697



 Score = 32.0 bits (71), Expect(2) = 1e-06
 Identities = 16/36 (44%), Positives = 22/36 (60%)
 Frame = +1

Query: 31  LRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMML 66
           L SKEYW+L+  G+ +   G  LT  E+KT  E+ L
Sbjct: 499 LASKEYWNLIYPGIPQQAVGVVLTENEKKTLDELKL 606


>TC87807 similar to GP|6175161|gb|AAF04887.1| unknown protein {Arabidopsis
           thaliana}, partial (64%)
          Length = 1398

 Score = 27.3 bits (59), Expect = 1.8
 Identities = 19/64 (29%), Positives = 34/64 (52%), Gaps = 3/64 (4%)
 Frame = +1

Query: 53  LTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEKNTLKKIWASM---RGKDKGYKS 109
           + A   KTP+   +  + VK    HA+D     T  +++ ++K+WAS+   + + K  KS
Sbjct: 934 IAARRYKTPWCQTVIDILVK----HAVDNVARFTAHQRDAVRKLWASILEQQTRRKQGKS 1101

Query: 110 I*GK 113
           + GK
Sbjct: 1102VNGK 1113


>TC84839 similar to GP|19386827|dbj|BAB86205. hypothetical protein~similar
           to Arabidopsis thaliana chromosome 5  T6I14_10, partial
           (20%)
          Length = 819

 Score = 26.2 bits (56), Expect = 4.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 24  QNLDGNFLRSKEYWSLVDDGVARLGSGGP 52
           +N D  F+   E W ++  G   +G GGP
Sbjct: 404 RNSDPRFVEEAEGWRIIGGGC*GIGGGGP 318


>TC77688 similar to GP|6319165|gb|AAF07191.1| branched-chain amino acid
           aminotransferase {Solanum tuberosum}, partial (81%)
          Length = 1761

 Score = 25.0 bits (53), Expect = 8.9
 Identities = 9/16 (56%), Positives = 12/16 (74%)
 Frame = -3

Query: 94  KKIWASMRGKDKGYKS 109
           K +W  MRGK+KG K+
Sbjct: 157 KWVWEEMRGKEKGKKN 110


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.333    0.147    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,602,079
Number of Sequences: 36976
Number of extensions: 39335
Number of successful extensions: 242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of query: 133
length of database: 9,014,727
effective HSP length: 86
effective length of query: 47
effective length of database: 5,834,791
effective search space: 274235177
effective search space used: 274235177
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 53 (25.0 bits)