BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126009.2 + phase: 0
(184 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89563 similar to GP|15865943|gb|AAL10121.1 NADH dehydrogenase ... 38 0.002
BE940916 36 0.010
TC79778 weakly similar to PIR|T39903|T39903 serine-rich protein ... 35 0.022
CB892131 similar to GP|19424015|gb| unknown protein {Arabidopsis... 28 2.1
TC88509 similar to PIR|T01826|T01826 microfibril-associated prot... 27 4.6
TC87477 homologue to SP|O43992|RS2_LEIAM 40S ribosomal protein S... 27 4.6
TC83261 weakly similar to GP|9759159|dbj|BAB09715.1 gb|AAC64874.... 27 6.0
TC76576 similar to GP|7576887|gb|AAF64040.1| 14-3-3-like protein... 27 6.0
TC82035 weakly similar to GP|11934675|gb|AAG41776.1 ent-kaurene ... 27 6.0
TC84793 homologue to PIR|T09684|T09684 heat shock protein 17K - ... 26 7.8
BG449854 weakly similar to GP|5579315|gb| polygalacturonase inhi... 26 7.8
AJ500975 similar to GP|9757977|dbj| heat shock hsp20 protein-lik... 26 7.8
TC91911 similar to SP|O50008|METE_ARATH 5-methyltetrahydropteroy... 26 7.8
TC76325 similar to PIR|C96814|C96814 hypothetical protein T30F21... 26 7.8
AW586562 26 7.8
TC77011 similar to GP|4190976|dbj|BAA74451.1 cytokinin-specific ... 26 7.8
TC76391 homologue to PIR|C96814|C96814 hypothetical protein T30F... 26 7.8
>TC89563 similar to GP|15865943|gb|AAL10121.1 NADH dehydrogenase subunit 2
{Varanus salvator cumingi}, partial (6%)
Length = 1400
Score = 38.1 bits (87), Expect = 0.002
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Frame = -3
Query: 37 GERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQNILSVVL-----PKKVDLIPQEE--- 88
GERP +W+RFK +F +P + D++ F L+V PK+ P EE
Sbjct: 1293 GERPTFHNRWRRFKLKFPIPSDYDTDSVTATFEGGKLTVKFAKLTNPKETTTNPPEEAPR 1114
Query: 89 -QEEEEKIPELEDLDKYQEK 107
+E +K+ E + K +E+
Sbjct: 1113 PKEPSQKVNEQKGTPKAKEE 1054
>BE940916
Length = 632
Score = 35.8 bits (81), Expect = 0.010
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1
Query: 46 WKRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKV---DLIPQEEQEEEEKIPE 97
W+RF+KEF +P + + + I F +L + LPK + +++P + ++ P+
Sbjct: 1 WRRFRKEFSIPPHSDTNNIGAKFEAGVLYIKLPKLISQQNIVPTPTKPTTQQEPQ 165
>TC79778 weakly similar to PIR|T39903|T39903 serine-rich protein - fission
yeast (Schizosaccharomyces pombe), partial (7%)
Length = 789
Score = 34.7 bits (78), Expect = 0.022
Identities = 21/89 (23%), Positives = 41/89 (45%)
Frame = +2
Query: 65 RGNFMQNILSVVLPKKVDLIPQEEQEEEEKIPELEDLDKYQEKNTYKSLGFGGRDREEEI 124
RG ++ I S L K+ L +EE EE I + E D++ N + EE+
Sbjct: 539 RGFALETIPSFSLSKRTGLREEEEDVEESDIEDEEGYDEFSVMNRMM--------QSEEV 694
Query: 125 GTLSEYTYRTDNKFGENDVETTREVALKF 153
+ ++ + +FG+N++ + + + F
Sbjct: 695 DRVCRVSFDEEGEFGDNEMYLAKGLGVDF 781
>CB892131 similar to GP|19424015|gb| unknown protein {Arabidopsis thaliana},
partial (29%)
Length = 747
Score = 28.1 bits (61), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = -3
Query: 43 GTKWKRFKKEFELPKYCNEDAIRGNFMQ 70
G KWK+ K+ F P C D+ +F+Q
Sbjct: 556 GWKWKKQKESFTFPHKCYCDSATADFLQ 473
>TC88509 similar to PIR|T01826|T01826 microfibril-associated protein homolog
T15F16.8 - Arabidopsis thaliana, partial (83%)
Length = 1306
Score = 26.9 bits (58), Expect = 4.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 82 DLIPQEEQEEEEKIPELEDLDKYQ 105
+ +PQEE+EEEE+ E E+ Y+
Sbjct: 487 EALPQEEEEEEEEEEEEEEESDYE 558
>TC87477 homologue to SP|O43992|RS2_LEIAM 40S ribosomal protein S2.
{Leishmania amazonensis}, partial (6%)
Length = 836
Score = 26.9 bits (58), Expect = 4.6
Identities = 11/31 (35%), Positives = 18/31 (57%)
Frame = +2
Query: 49 FKKEFELPKYCNEDAIRGNFMQNILSVVLPK 79
FK+ +LP+ C+ I IL+V++PK
Sbjct: 545 FKRRVKLPEGCDVSKITAKLNDGILTVMIPK 637
>TC83261 weakly similar to GP|9759159|dbj|BAB09715.1
gb|AAC64874.1~gene_id:MEE6.20~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (26%)
Length = 1000
Score = 26.6 bits (57), Expect = 6.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -2
Query: 138 FGENDVETTREVALKFMVVIIVVMVIVNYLVDMSKTVMAQGQSYFQ 183
F E R+ LK + + +V + +N+L ++ ++ QSYF+
Sbjct: 792 FLEKSCLLARKQCLKLLKIYMVCLYYLNFLENLELVMLCAEQSYFK 655
>TC76576 similar to GP|7576887|gb|AAF64040.1| 14-3-3-like protein {Glycine
max}, partial (97%)
Length = 1142
Score = 26.6 bits (57), Expect = 6.0
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +1
Query: 115 FGGRDREEEIGTLSEYTYRTDNKFGENDVETTREV----ALKFMVVIIVVMVIVNYLVDM 170
F D ++E+ LS Y+T + EN+++ T + AL F V +M +
Sbjct: 493 FKAGDEKKEVADLSLKAYQTASATAENELQPTHPIRLGLALNFSVFYYEIMNSPERACHL 672
Query: 171 SKTVMAQGQS 180
+K G S
Sbjct: 673 AKQAFDDGVS 702
>TC82035 weakly similar to GP|11934675|gb|AAG41776.1 ent-kaurene oxidase
{Cucurbita maxima}, partial (50%)
Length = 788
Score = 26.6 bits (57), Expect = 6.0
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = +2
Query: 89 QEEEEKIPELEDLDKYQEKNTYKSLGFGGRDR 120
+ +E IPE +KY + YK++ FGG R
Sbjct: 608 ENPQEWIPERFLDEKYDSSDLYKTMAFGGGKR 703
>TC84793 homologue to PIR|T09684|T09684 heat shock protein 17K - alfalfa,
partial (76%)
Length = 506
Score = 26.2 bits (56), Expect = 7.8
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = +3
Query: 48 RFKKEFELPKYCNEDAIRGNFMQNILSVVLPK 79
+F ++F LP+ N DA+ +LSV + K
Sbjct: 222 KFMRKFVLPENANTDAVSAVCQDGVLSVTVQK 317
>BG449854 weakly similar to GP|5579315|gb| polygalacturonase inhibitor
protein {Glycine max}, partial (46%)
Length = 635
Score = 26.2 bits (56), Expect = 7.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 98 LEDLDKYQEKNTYKSLGFGGRDREEEIGTLSE 129
L+D+D + + +G+GGRD +E+G + E
Sbjct: 398 LDDVDGIE----FGEVGYGGRDSSDEVGCVHE 315
>AJ500975 similar to GP|9757977|dbj| heat shock hsp20 protein-like
{Arabidopsis thaliana}, partial (72%)
Length = 512
Score = 26.2 bits (56), Expect = 7.8
Identities = 17/58 (29%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Frame = +3
Query: 49 FKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQEEQEEEEKI-PELEDLDKYQ 105
F + ELP+ D I+ + +L+V++PK D P+ + I +L DL Y+
Sbjct: 327 FSRMIELPENVKLDQIKAHVENGVLTVLVPK--DASPKSHKVRNINITSKL*DLQNYR 494
>TC91911 similar to SP|O50008|METE_ARATH
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14), partial (26%)
Length = 611
Score = 26.2 bits (56), Expect = 7.8
Identities = 11/23 (47%), Positives = 13/23 (55%)
Frame = -1
Query: 20 WRREQDRDTIELHLPGNGERPFD 42
WR EQ+ DT L LP PF+
Sbjct: 200 WRSEQEVDTTSLSLPTISSSPFN 132
>TC76325 similar to PIR|C96814|C96814 hypothetical protein T30F21.10
[imported] - Arabidopsis thaliana, partial (97%)
Length = 2416
Score = 26.2 bits (56), Expect = 7.8
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 11 YEDF-DPVFKWRREQDRDTIELHLPGNGERPFDGTKWKRFKKEFELPKYCNEDAIRGNFM 69
Y D+ DP FKW+ + ++ + DG K KKEF E I+ F+
Sbjct: 1840 YRDYIDPSFKWQNFTLEEQAKVIVAARSNNEMDGAK---LKKEFPELLSIKESLIKYVFV 2010
Query: 70 QN 71
N
Sbjct: 2011 PN 2016
>AW586562
Length = 606
Score = 26.2 bits (56), Expect = 7.8
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +2
Query: 72 ILSVVLPKKVDLIPQEEQEEEEKIPELEDLDKYQEK 107
+LSV+LP ++D+I QE +PE +QEK
Sbjct: 236 VLSVILPPRIDMI-QELPPRINLVPEPPPRVNFQEK 340
>TC77011 similar to GP|4190976|dbj|BAA74451.1 cytokinin-specific binding
protein {Vigna radiata}, partial (76%)
Length = 1042
Score = 26.2 bits (56), Expect = 7.8
Identities = 10/26 (38%), Positives = 18/26 (68%)
Frame = +2
Query: 139 GENDVETTREVALKFMVVIIVVMVIV 164
G+N TTRE+ + MVV+++++ V
Sbjct: 725 GKNPKHTTRELVVLMMVVLVIIIAEV 802
>TC76391 homologue to PIR|C96814|C96814 hypothetical protein T30F21.10
[imported] - Arabidopsis thaliana, partial (33%)
Length = 838
Score = 26.2 bits (56), Expect = 7.8
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +3
Query: 11 YEDF-DPVFKWRREQDRDTIELHLPGNGERPFDGTKWKRFKKEFELPKYCNEDAIRGNFM 69
Y D+ DP FKW+ + ++ + DG K KKEF E I+ F+
Sbjct: 603 YRDYIDPSFKWQNFTLEEQAKVIVAARSNNEMDGAK---LKKEFPELLSIKESLIKYVFV 773
Query: 70 QN 71
N
Sbjct: 774 PN 779
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,091,232
Number of Sequences: 36976
Number of extensions: 63505
Number of successful extensions: 378
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of query: 184
length of database: 9,014,727
effective HSP length: 90
effective length of query: 94
effective length of database: 5,686,887
effective search space: 534567378
effective search space used: 534567378
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC126009.2