TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC125481.7 + phase: 0 /pseudo
         (489 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG587143 weakly similar to PIR|A96586|A9 hypothetical protein F2...   100  2e-21
BG586303 weakly similar to PIR|A96586|A96 hypothetical protein F...    36  0.029
TC89033 similar to GP|11994412|dbj|BAB02414. chloroplast nucleoi...    30  2.7
TC88897 similar to PIR|S62699|S62699 photoassimilate-responsive ...    29  4.7
TC88645 similar to PIR|S62700|S62700 photoassimilate-responsive ...    28  8.0

>BG587143 weakly similar to PIR|A96586|A9 hypothetical protein F20D21.24
           [imported] - Arabidopsis thaliana, partial (12%)
          Length = 717

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 47/102 (46%), Positives = 69/102 (67%), Gaps = 2/102 (1%)
 Frame = -3

Query: 156 HVPCGGARPFSPCMDRGRCTKYYRKNYKGTTTIDE-GYPRYKRR-DFGIHVDKQRVLLDN 213
           H PCG   P SPCM+   CTK Y + Y G+T+ID+ GY  Y+RR +   HV K   +L+N
Sbjct: 415 HGPCGVINPKSPCMENNVCTKKYPRPYNGSTSIDKSGYVLYRRR*NETEHVVKNGAILNN 236

Query: 214 RYVVPYNPHLLIRYGGHVNVECCNKSNSIKYLFKYVNKVPDK 255
            ++VP+N  LL +Y  H+N+E CN+++++KYLFKY+ K  D+
Sbjct: 235 TFIVPHNIKLLKKYEAHINMEWCNRTSAVKYLFKYITKGVDR 110



 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 17/24 (70%), Positives = 22/24 (90%)
 Frame = -3

Query: 122 SDRPDIVCRVFKMKLDKLMDDFEK 145
           +D+PDI CRVFKMKLD+L+ DF+K
Sbjct: 691 NDKPDIECRVFKMKLDELLKDFKK 620


>BG586303 weakly similar to PIR|A96586|A96 hypothetical protein F20D21.24
           [imported] - Arabidopsis thaliana, partial (3%)
          Length = 698

 Score = 36.2 bits (82), Expect = 0.029
 Identities = 16/24 (66%), Positives = 19/24 (78%)
 Frame = -3

Query: 122 SDRPDIVCRVFKMKLDKLMDDFEK 145
           +DR D+  RVFKMKLD+LM DF K
Sbjct: 666 NDRHDLKSRVFKMKLDELMSDFNK 595


>TC89033 similar to GP|11994412|dbj|BAB02414. chloroplast nucleoid DNA
           binding protein-like {Arabidopsis thaliana}, partial
           (11%)
          Length = 1051

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 307 LKLLFHLHNEQGNIDHVSRMV 327
           L+L+FHLH   GN+D++S +V
Sbjct: 222 LRLIFHLHFHMGNLDYLSLIV 160


>TC88897 similar to PIR|S62699|S62699 photoassimilate-responsive protein
           PAR-1b precursor - common tobacco, partial (77%)
          Length = 920

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 116 ERNLKASDRPDIVCRVFKMKLDKLMDDFEKEECL 149
           E+++K +      CR  +++ DKL D  E ++C+
Sbjct: 262 EKHVKRNGEEKYTCRTSEIEADKLKDHIESDQCI 363


>TC88645 similar to PIR|S62700|S62700 photoassimilate-responsive protein
           PAR-1c precursor - common tobacco, partial (90%)
          Length = 1164

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 116 ERNLKASDRPDIVCRVFKMKLDKLMDDFEKEECL 149
           E+++K +      C+  +++ DKL D  E ++C+
Sbjct: 254 EKHVKRTGEEAYTCKTLEIEADKLKDHIESDQCI 355


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.342    0.150    0.514 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,110,612
Number of Sequences: 36976
Number of extensions: 234456
Number of successful extensions: 1454
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of query: 489
length of database: 9,014,727
effective HSP length: 100
effective length of query: 389
effective length of database: 5,317,127
effective search space: 2068362403
effective search space used: 2068362403
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 60 (27.7 bits)