BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125479.3 - phase: 0
(68 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79284 similar to GP|10178077|dbj|BAB11496. gene_id:K19B1.7~unk... 42 5e-05
TC76413 similar to GP|3461820|gb|AAC32914.1| unknown protein {Ar... 40 2e-04
TC76420 similar to PIR|T45715|T45715 hypothetical protein F1P2.1... 40 2e-04
TC92967 similar to GP|9972376|gb|AAG10626.1| Unknown protein {Ar... 38 9e-04
BF650337 similar to GP|8885610|dbj| contains similarity to unkno... 33 0.016
TC77876 similar to PIR|T05265|T05265 coat protein gamma-COP homo... 27 1.5
TC79355 similar to GP|15081721|gb|AAK82515.1 At1g04990/F13M7_1 {... 26 2.6
AL386929 26 3.4
TC80871 similar to GP|17977868|emb|CAD12663. casein kinase II al... 26 3.4
AW329293 similar to GP|19352051|dbj auxin response factor 10 {Or... 25 4.4
BG583961 similar to GP|14599408|em probable major surface glycop... 25 5.8
BQ144020 homologue to PIR|B84620|B846 hypothetical protein At2g2... 25 7.5
TC85056 homologue to GP|9651530|gb|AAF91178.1| ClpB {Phaseolus l... 25 7.5
TC86857 similar to GP|14161088|emb|CAB76907. alpha-fucosidase {C... 25 7.5
>TC79284 similar to GP|10178077|dbj|BAB11496. gene_id:K19B1.7~unknown
protein {Arabidopsis thaliana}, partial (56%)
Length = 1009
Score = 42.0 bits (97), Expect = 5e-05
Identities = 19/34 (55%), Positives = 22/34 (63%)
Frame = +3
Query: 25 EQLVIGKMGECRYCHEEEWIYRLEAPCRCDGSLK 58
E L+ +M ECR C EE+ I LE PC C GSLK
Sbjct: 237 EPLLQMEMAECRICQEEDGIDNLENPCACSGSLK 338
>TC76413 similar to GP|3461820|gb|AAC32914.1| unknown protein {Arabidopsis
thaliana}, partial (54%)
Length = 1310
Score = 40.0 bits (92), Expect = 2e-04
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 31 KMGECRYCHEEEWIYRLEAPCRCDGSLK 58
+M ECR C EE+ + LE PC C GSLK
Sbjct: 868 QMVECRICQEEDSVSNLETPCACSGSLK 951
>TC76420 similar to PIR|T45715|T45715 hypothetical protein F1P2.100 -
Arabidopsis thaliana, partial (67%)
Length = 1176
Score = 40.0 bits (92), Expect = 2e-04
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 31 KMGECRYCHEEEWIYRLEAPCRCDGSLK 58
+M ECR C EE+ + LE PC C GSLK
Sbjct: 247 QMVECRICQEEDSVSNLETPCACSGSLK 330
>TC92967 similar to GP|9972376|gb|AAG10626.1| Unknown protein {Arabidopsis
thaliana}, partial (32%)
Length = 701
Score = 37.7 bits (86), Expect = 9e-04
Identities = 17/45 (37%), Positives = 27/45 (59%), Gaps = 2/45 (4%)
Frame = +1
Query: 16 IEELSAALREQLVIGKMGECRYCHEEEW--IYRLEAPCRCDGSLK 58
+EE+ + + ++ + CR CHEEE+ LEAPC C G++K
Sbjct: 79 MEEVVLLIDDLRLLSGISRCRICHEEEFESSKALEAPCSCSGTVK 213
>BF650337 similar to GP|8885610|dbj| contains similarity to unknown
protein~gb|AAC32914.1~gene_id:F16F17.8 {Arabidopsis
thaliana}, partial (20%)
Length = 472
Score = 33.5 bits (75), Expect = 0.016
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 34 ECRYCHEEEWIYRLEAPCRCDGSLK 58
+CR CH+E+ ++ PC C G+LK
Sbjct: 315 QCRICHDEDEDLNMDTPCSCCGTLK 389
>TC77876 similar to PIR|T05265|T05265 coat protein gamma-COP homolog T4L20.30
- Arabidopsis thaliana, partial (50%)
Length = 1746
Score = 26.9 bits (58), Expect = 1.5
Identities = 10/36 (27%), Positives = 18/36 (49%), Gaps = 1/36 (2%)
Frame = +3
Query: 30 GKMGE-CRYCHEEEWIYRLEAPCRCDGSLKVFQFYL 64
G++G C+YCH+ W+ L C K+ ++
Sbjct: 1152 GELGRSCKYCHQPSWLAAL*GYRGCSTQFKITHMFV 1259
>TC79355 similar to GP|15081721|gb|AAK82515.1 At1g04990/F13M7_1 {Arabidopsis
thaliana}, partial (42%)
Length = 1627
Score = 26.2 bits (56), Expect = 2.6
Identities = 14/43 (32%), Positives = 20/43 (45%), Gaps = 12/43 (27%)
Frame = +3
Query: 9 VHQVEIPIEELSAALR------------EQLVIGKMGECRYCH 39
+H ++P+EEL LR LV+ G+CR CH
Sbjct: 663 IHNRQLPLEELIQWLRPLPPQLLLHQVFHMLVVFLHGQCRECH 791
>AL386929
Length = 474
Score = 25.8 bits (55), Expect = 3.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 43 WIYRLEAPCRCDGSLKV 59
WI+R+ A C C S+K+
Sbjct: 303 WIFRIHAACTCISSVKI 353
>TC80871 similar to GP|17977868|emb|CAD12663. casein kinase II alpha subunit
{Sinapis alba}, partial (41%)
Length = 731
Score = 25.8 bits (55), Expect = 3.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3
Query: 42 EWIYRLEAPCR 52
EWI+R+ APCR
Sbjct: 231 EWIFRISAPCR 199
>AW329293 similar to GP|19352051|dbj auxin response factor 10 {Oryza sativa},
partial (11%)
Length = 684
Score = 25.4 bits (54), Expect = 4.4
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 7 ITVHQVEIPIE-ELSAALREQLVIGK 31
+TVHQ+EIPI+ + +RE L+I K
Sbjct: 254 MTVHQMEIPIKWVIFPMVRELLIINK 331
>BG583961 similar to GP|14599408|em probable major surface glycoprotein
{Pneumocystis carinii}, partial (4%)
Length = 803
Score = 25.0 bits (53), Expect = 5.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 19 LSAALREQLVIGKMGECRYCHEEEWIYRLEAPCRCD 54
LS +LRE+ +I C CH + I R A RCD
Sbjct: 608 LSLSLRERHLI*SYFACNICHNKCPICRYIA**RCD 501
>BQ144020 homologue to PIR|B84620|B846 hypothetical protein At2g23070
[imported] - Arabidopsis thaliana, partial (14%)
Length = 573
Score = 24.6 bits (52), Expect = 7.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 42 EWIYRLEAPCR 52
EWI+R+ APCR
Sbjct: 359 EWIFRIFAPCR 327
>TC85056 homologue to GP|9651530|gb|AAF91178.1| ClpB {Phaseolus lunatus},
partial (25%)
Length = 743
Score = 24.6 bits (52), Expect = 7.5
Identities = 13/34 (38%), Positives = 17/34 (49%), Gaps = 6/34 (17%)
Frame = -2
Query: 39 HEEEWIYRLEAPCRCDGSLKVF------QFYLKH 66
H + ++ L PCRC S +VF Q YL H
Sbjct: 544 HFQAYLVFL*MPCRCHFSKRVFPSPASRQLYLSH 443
>TC86857 similar to GP|14161088|emb|CAB76907. alpha-fucosidase {Cicer
arietinum}, partial (41%)
Length = 860
Score = 24.6 bits (52), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 21 AALREQLVIGKMGECRYCHEEEWIYRL 47
A++ QL+ M R CH+E+W + L
Sbjct: 256 ASIHHQLLQRLMA*YRMCHQEKWGFHL 176
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.324 0.140 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,774,982
Number of Sequences: 36976
Number of extensions: 34112
Number of successful extensions: 241
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of query: 68
length of database: 9,014,727
effective HSP length: 44
effective length of query: 24
effective length of database: 7,387,783
effective search space: 177306792
effective search space used: 177306792
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)
Medicago: description of AC125479.3