TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC125477.1 + phase: 2 /pseudo/partial
         (358 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77597 similar to GP|6041823|gb|AAF02138.1| lysyl-tRNA syntheta...   566  e-162
TC77594 similar to PIR|T10672|T10672 aspartate--tRNA ligase homo...    45  6e-05
AW585068                                                               29  3.2
CB894058 similar to PIR|T02367|T0 hypothetical protein T8F5.22 -...    28  4.2

>TC77597 similar to GP|6041823|gb|AAF02138.1| lysyl-tRNA synthetase
           {Arabidopsis thaliana}, partial (86%)
          Length = 2157

 Score =  566 bits (1460), Expect = e-162
 Identities = 279/376 (74%), Positives = 318/376 (84%), Gaps = 19/376 (5%)
 Frame = +1

Query: 2   SDLDEVEFCKFHSTVERGDTVGVIGFPGKSEEGDLSIFPKTFTVLSHCLHLMPDQKSTAA 61
           SDL+E  F K HS V+RGD VG+ GFPGKS +G+LSIFPKTF VLSHCLH+MP QKS AA
Sbjct: 586 SDLNEAGFDKVHSNVKRGDIVGITGFPGKSRKGELSIFPKTFVVLSHCLHMMPRQKSAAA 765

Query: 62  AAANNANL-----------MES*NIHFK--------GSDIREIFHTRNRIISYIQRHLDD 102
           AAA+NA L           ++     ++         +++REIF TR++IISY++  LD 
Sbjct: 766 AAADNAWLPGKTRNPEAYTLKDQETRYRLRHLDLMLNTEVREIFRTRSKIISYVRSFLDK 945

Query: 103 LDFMEVETPMMNKIAGGAAARPFVTHHNELDLKLFMRIAPELYLKQLVVGGMERVYEIGK 162
           LDF+EVETPMMN IAGGAAARPFVTHHN+L+++LFMRIAPELYLK+LVVGG+ RVYEIGK
Sbjct: 946 LDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKKLVVGGLNRVYEIGK 1125

Query: 163 QFRNEDIDLTHNPEFTTCEFYMAYNEYNDLMEITERMLSGLVQELTNGSYKIKYHANGVD 222
           QFRNE IDLTHNPEFTTCEFYMAY +Y DLMEITE MLSG+V ELT GSYKIKYHA+G+D
Sbjct: 1126QFRNEGIDLTHNPEFTTCEFYMAYKDYYDLMEITENMLSGMVYELTKGSYKIKYHADGLD 1305

Query: 223 KDPIEIDFTPPFRRIDMIEELESMAGLSIPKDLATDEANQYLKNACLEYDIKCAPAQTTA 282
           KDPIEIDFTPPFRRIDMIE LE MAGLSIPKDL + EANQYL++ACL+Y+IKC P +TTA
Sbjct: 1306KDPIEIDFTPPFRRIDMIEGLEEMAGLSIPKDLTSAEANQYLRDACLKYEIKCPPPETTA 1485

Query: 283 RLLDKLAGHFLEETCVNPTFIINHPEIMSPLAKWHRTKPGLTERFELIVNKLKLSNAYTE 342
           RLLDKL GHFLEETCVNPTFIINHPEIMSPLAKWHRTKPGLTERFEL +NK +L+NAYTE
Sbjct: 1486RLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRTKPGLTERFELFINKHELANAYTE 1665

Query: 343 LNDPVVQRQRFAEQLK 358
           LNDPVVQRQRFA+QLK
Sbjct: 1666LNDPVVQRQRFADQLK 1713


>TC77594 similar to PIR|T10672|T10672 aspartate--tRNA ligase homolog
           F6E21.100 - Arabidopsis thaliana, partial (73%)
          Length = 2043

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 58/275 (21%), Positives = 115/275 (41%), Gaps = 26/275 (9%)
 Frame = +1

Query: 3   DLDEVEFCKFHSTVERG---DTVGVIGFPGKSEEG---DLSIFPKTFTVLSHCLHLMPDQ 56
           DL   +  KF + + R    D  GV+  P    +G    + I  +    +S  +  +P  
Sbjct: 478 DLVSPQMVKFAAALSRESIVDVEGVVSIPAAPIKGATQQIEIQVRKLYCVSKAIPTLPIN 657

Query: 57  KSTAA-----------AAANNANLMES*NIHFKGSDIRE-----IFHTRNRIISYIQRHL 100
              AA           A      + +   ++F+  D+R      IF  ++++ +  ++ L
Sbjct: 658 IEDAARSEVEIEKAIQAGEQLVRVNQDTRLNFRVLDLRTPANQGIFRIQSQVGNVFRQFL 837

Query: 101 DDLDFMEVETPMMNKIAGGAAARPFVTHHNELDLKLFMRIAPELYLKQLVVGGMERVYEI 160
               F+E+ TP +  IAG +     V   +       +  +P+L+ +  + G   RV+EI
Sbjct: 838 LAESFVEIHTPKL--IAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEI 1011

Query: 161 GKQFRNEDIDLTHNP--EFTTCEFYMAYNE-YNDLMEITERMLSGLVQELTNGSYK-IKY 216
           G  FR ED   TH    EFT  +  M   + Y ++M++ +++   +   L     K ++ 
Sbjct: 1012GPVFRAED-SFTHRHLCEFTGLDVEMEIKKHYFEVMDVVDKLFVAMFDTLNTKCKKDLEA 1188

Query: 217 HANGVDKDPIEIDFTPPFRRIDMIEELESMAGLSI 251
            AN    +P++  + P   R+   E ++ +  + +
Sbjct: 1189VANQYPFEPLK--YLPNTLRLTYEEGIQMLKEVGV 1287


>AW585068 
          Length = 513

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +1

Query: 109 ETPMMNKIAGGAAA-----RPFVTHHNELDLKLFMRIAPELY--LKQLVVGGMERVY 158
           + P  N+IAG AA      +P +T+  ELD  L+   +PE    L  + + G ER Y
Sbjct: 298 DRPKTNRIAGAAALLTDRLKPIITYAFELDTGLYPGTSPENEEGLDAIPLAGGERPY 468


>CB894058 similar to PIR|T02367|T0 hypothetical protein T8F5.22 - Arabidopsis
           thaliana, partial (13%)
          Length = 771

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
 Frame = -1

Query: 83  REIFHTRNRIISYIQRHLDD--------LDFMEVETPMMNKIAGGAAA 122
           +++F   +R+++Y QRH+DD        +  +    PM +   GG++A
Sbjct: 195 KKMFEDIDRLVAYFQRHIDDPQNDSAPSIRSVAAMVPMRSPATGGSSA 52


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,137,793
Number of Sequences: 36976
Number of extensions: 127021
Number of successful extensions: 545
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of query: 358
length of database: 9,014,727
effective HSP length: 97
effective length of query: 261
effective length of database: 5,428,055
effective search space: 1416722355
effective search space used: 1416722355
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)