BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124972.11 - phase: 0 /pseudo
(127 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC80198 weakly similar to GP|19310480|gb|AAL84974.1 AT5g60340/k9... 266 2e-72
BG647889 similar to PIR|D84790|D84 probable adenylate kinase [im... 35 0.010
TC79768 similar to PIR|B96657|B96657 probable replication factor... 34 0.013
TC88082 similar to GP|10798790|dbj|BAB16439. replication factor ... 33 0.029
BG584683 similar to GP|6063552|dbj ESTs AU065232(E60855) C23624(... 32 0.050
TC80439 similar to GP|6063552|dbj|BAA85412.1 ESTs AU065232(E6085... 32 0.050
TC93179 similar to SP|O24464|KAD_PRUAR Adenylate kinase (EC 2.7.... 32 0.086
TC88085 similar to GP|20259341|gb|AAM13995.1 unknown protein {Ar... 32 0.086
TC78210 similar to GP|6056413|gb|AAF02877.1| Unknown protein {Ar... 32 0.086
TC81176 similar to GP|17065122|gb|AAL32715.1 Similar replication... 31 0.11
BI308512 similar to SP|O24464|KAD_ Adenylate kinase (EC 2.7.4.3)... 31 0.15
TC85201 similar to SP|P38414|LOX1_LENCU Lipoxygenase (EC 1.13.11... 30 0.19
TC85745 homologue to GP|17297987|dbj|BAB78491. 26S proteasome re... 30 0.19
TC85744 homologue to PIR|T08959|T08959 proteinase homolog F19B15... 30 0.19
TC77576 similar to SP|O04905|UMPK_ARATH Uridylate kinase (EC 2.7... 30 0.25
BQ752143 similar to PIR|T39572|T39 probable proteinase subunit -... 30 0.33
BG589071 similar to GP|15928999|gb UMP-CMP kinase {Homo sapiens}... 30 0.33
TC81332 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22... 30 0.33
TC78797 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22... 29 0.43
TC88876 similar to PIR|G96537|G96537 hypothetical protein F2J10.... 29 0.43
>TC80198 weakly similar to GP|19310480|gb|AAL84974.1 AT5g60340/k9b18_30
{Arabidopsis thaliana}, partial (89%)
Length = 762
Score = 266 bits (679), Expect = 2e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Frame = +2
Query: 1 MVKDSIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDS 60
MVKDSIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDS
Sbjct: 215 MVKDSIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDS 394
Query: 61 YILNEDLVCDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKE 120
YILNEDLVCDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKE
Sbjct: 395 YILNEDLVCDELEDVMDEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKE 574
Query: 121 SKLSNNV 127
SKLSNNV
Sbjct: 575 SKLSNNV 595
>BG647889 similar to PIR|D84790|D84 probable adenylate kinase [imported] -
Arabidopsis thaliana, partial (65%)
Length = 793
Score = 34.7 bits (78), Expect = 0.010
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 17 GTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDG-WDDELDSYILNEDLVCDEL 72
G PG GK T ++ L+ + HI GDLV+E+ G +L + LV DE+
Sbjct: 183 GCPGVGKGTYASRLSNLLGVPHIATGDLVREELSSSGPLSSQLSEIVKQGQLVSDEI 353
>TC79768 similar to PIR|B96657|B96657 probable replication factor F16M19.6
[imported] - Arabidopsis thaliana, complete
Length = 1246
Score = 34.3 bits (77), Expect = 0.013
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 11 PNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHD 52
PN++++G PGTGKTT+ ALA +L N + V E N D
Sbjct: 226 PNLILSGPPGTGKTTSILALAH--ELLGPNYREAVLELNASD 345
>TC88082 similar to GP|10798790|dbj|BAB16439. replication factor C 36kDa
subunit {Oryza sativa (japonica cultivar-group)},
partial (88%)
Length = 1354
Score = 33.1 bits (74), Expect = 0.029
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +1
Query: 7 KRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHD 52
+ R P++L+ G PGTGK TST LA A +L +++ E N D
Sbjct: 250 ENRLPHLLLYGPPGTGK--TSTILAVARKLYGAQYHNMILELNASD 381
>BG584683 similar to GP|6063552|dbj ESTs AU065232(E60855) C23624(S1554)
AU078241(E60855) correspond to a region of the predicted
gene.~, partial (44%)
Length = 719
Score = 32.3 bits (72), Expect = 0.050
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 1/57 (1%)
Frame = +1
Query: 17 GTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDG-WDDELDSYILNEDLVCDEL 72
G PG GK T ++ L + HI GDLV+ + +G +L + LV DE+
Sbjct: 148 GCPGVGKGTYASRLCNLLGVPHIATGDLVRHELSSNGPLSSQLSEIVNQGQLVSDEI 318
>TC80439 similar to GP|6063552|dbj|BAA85412.1 ESTs AU065232(E60855)
C23624(S1554) AU078241(E60855) correspond to a region
of the predicted gene.~, partial (71%)
Length = 1172
Score = 32.3 bits (72), Expect = 0.050
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 1/57 (1%)
Frame = +2
Query: 17 GTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDG-WDDELDSYILNEDLVCDEL 72
G PG GK T ++ L + HI GDLV+ + +G +L + LV DE+
Sbjct: 140 GCPGVGKGTYASRLCNLLGVPHIATGDLVRHELSSNGPLSSQLSEIVNQGQLVSDEI 310
>TC93179 similar to SP|O24464|KAD_PRUAR Adenylate kinase (EC 2.7.4.3)
(ATP-AMP transphosphorylase). [Apricot] {Prunus
armeniaca}, partial (55%)
Length = 674
Score = 31.6 bits (70), Expect = 0.086
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 15 VTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHD 52
V G PG+GK T + E H++ GDL++++ + D
Sbjct: 267 VLGGPGSGKGTQCARIVETFGFKHLSAGDLLRKEMVSD 380
>TC88085 similar to GP|20259341|gb|AAM13995.1 unknown protein {Arabidopsis
thaliana}, partial (29%)
Length = 1261
Score = 31.6 bits (70), Expect = 0.086
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1
Query: 3 KDSIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYI 62
K + + IL+ G PGTGKT + A+A N INI ++ W E + Y+
Sbjct: 847 KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI----SMSSITSKWFGEGEKYV 1014
>TC78210 similar to GP|6056413|gb|AAF02877.1| Unknown protein {Arabidopsis
thaliana}, partial (23%)
Length = 1254
Score = 31.6 bits (70), Expect = 0.086
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 3 KDSIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYI 62
K + + IL+ G PGTGKT + A+A N INI ++ W E + Y+
Sbjct: 48 KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI----SMSSITSKWFGEGEKYV 215
>TC81176 similar to GP|17065122|gb|AAL32715.1 Similar replication factor C
37-kDa subunit {Arabidopsis thaliana}, partial (79%)
Length = 875
Score = 31.2 bits (69), Expect = 0.11
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 11 PNILVTGTPGTGKTTTSTALA 31
P++L G PGTGKTTT+ A+A
Sbjct: 149 PHMLFYGPPGTGKTTTALAIA 211
>BI308512 similar to SP|O24464|KAD_ Adenylate kinase (EC 2.7.4.3) (ATP-AMP
transphosphorylase). [Apricot] {Prunus armeniaca},
partial (77%)
Length = 778
Score = 30.8 bits (68), Expect = 0.15
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 15 VTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHD 52
V G PG+GK T + E H++ GDL+++ + D
Sbjct: 173 VLGGPGSGKGTQCARIVETFGFKHLSAGDLLRKAMVSD 286
>TC85201 similar to SP|P38414|LOX1_LENCU Lipoxygenase (EC 1.13.11.12).
[Lentil] {Lens culinaris}, partial (49%)
Length = 1275
Score = 30.4 bits (67), Expect = 0.19
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 87 GCDFFPERWFDCVVVLQTDNTILYDRLSRR 116
GC +FP+ W + VVV+Q + I+ D L R
Sbjct: 456 GCIYFPQIWKEWVVVIQYEQFIILDSLFYR 367
>TC85745 homologue to GP|17297987|dbj|BAB78491. 26S proteasome regulatory
particle triple-A ATPase subunit2b {Oryza sativa
(japonica cultivar-group), partial (98%)
Length = 1696
Score = 30.4 bits (67), Expect = 0.19
Identities = 15/42 (35%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = +3
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHIN-IGDLVKEKNLHDG 53
+++ G PGTGKT + A+A +T + +G + +K L DG
Sbjct: 762 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 887
>TC85744 homologue to PIR|T08959|T08959 proteinase homolog F19B15.70 -
Arabidopsis thaliana, complete
Length = 1629
Score = 30.4 bits (67), Expect = 0.19
Identities = 15/42 (35%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = +2
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHIN-IGDLVKEKNLHDG 53
+++ G PGTGKT + A+A +T + +G + +K L DG
Sbjct: 764 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 889
>TC77576 similar to SP|O04905|UMPK_ARATH Uridylate kinase (EC 2.7.4.-) (UK)
(Uridine monophosphate kinase) (UMP kinase) (UMP/CMP
kinase)., partial (93%)
Length = 1073
Score = 30.0 bits (66), Expect = 0.25
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 5 SIKRRKPNIL-VTGTPGTGKTTTSTALAEATQLNHINIGDLVK 46
S+ + P ++ V G PG+GK T + E H++ GDL++
Sbjct: 257 SVLNKNPTVVFVLGGPGSGKGTQCANVVEHFGFTHLSAGDLLR 385
>BQ752143 similar to PIR|T39572|T39 probable proteinase subunit - fission
yeast (Schizosaccharomyces pombe), partial (18%)
Length = 774
Score = 29.6 bits (65), Expect = 0.33
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Frame = +2
Query: 7 KRRKPNILVTGTPGTGKTTTSTALAE------------ATQLNHINIGDLVKEKNLHDGW 54
+R K N ++ G PG GKTT LA+ A +L +++G LV +
Sbjct: 416 RRTKNNPVLIGEPGVGKTTVVEGLAQRIVNRDVPDNLKACKLLSLDVGALVAGSKYRGEF 595
Query: 55 DDELDSYILNEDLVCDELEDVMDEGGNIVDYHGCDFFP 92
++ + V E+ED + VD C + P
Sbjct: 596 EERMKG-------VLKEIEDSKEMIVLFVDESICSWVP 688
>BG589071 similar to GP|15928999|gb UMP-CMP kinase {Homo sapiens}, partial
(50%)
Length = 579
Score = 29.6 bits (65), Expect = 0.33
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHINIGDLVK-EKNLHDGWDDELDSYILNEDLVCDE 71
+ V G PG GK T + H++ GDL++ E+N +D YI +V E
Sbjct: 161 VFVLGGPGAGKGTQCANIVRDFGFAHLSAGDLLREERNSGSETAQLIDRYIKEGQIVPVE 340
Query: 72 L 72
+
Sbjct: 341 I 343
>TC81332 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22
{Arabidopsis thaliana}, partial (39%)
Length = 1514
Score = 29.6 bits (65), Expect = 0.33
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 4 DSIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINI 41
D + + +L+ G PGTGKT + A+A + IN+
Sbjct: 925 DGVLKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINV 1038
>TC78797 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22 {Arabidopsis
thaliana}, partial (74%)
Length = 2270
Score = 29.3 bits (64), Expect = 0.43
Identities = 13/29 (44%), Positives = 19/29 (64%)
Frame = +1
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHINI 41
IL+ G PGTGKT + A+A+ + IN+
Sbjct: 1825 ILLFGPPGTGKTMLAKAIAKEAGASFINV 1911
>TC88876 similar to PIR|G96537|G96537 hypothetical protein F2J10.1 [imported]
- Arabidopsis thaliana, partial (72%)
Length = 1572
Score = 29.3 bits (64), Expect = 0.43
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +2
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHINI 41
IL+ G PGTGKT + ALA N I++
Sbjct: 1034 ILLFGPPGTGKTLLAKALATEAGANFISV 1120
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,841,837
Number of Sequences: 36976
Number of extensions: 50668
Number of successful extensions: 331
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of query: 127
length of database: 9,014,727
effective HSP length: 85
effective length of query: 42
effective length of database: 5,871,767
effective search space: 246614214
effective search space used: 246614214
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC124972.11