BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124972.10 - phase: 1 /pseudo
(135 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86790 similar to PIR|A84861|A84861 probable amine oxidase [imp... 188 6e-49
TC85753 similar to PIR|D96682|D96682 protein F1E22.18 [imported]... 135 5e-33
TC83534 similar to GP|21553762|gb|AAM62855.1 putative amine oxid... 129 4e-31
BG447941 weakly similar to GP|18650598|gb| At2g43020/MFL8.12 {Ar... 28 0.84
TC93823 weakly similar to GP|18650598|gb|AAL75899.1 At2g43020/MF... 28 0.84
TC88312 similar to GP|21593856|gb|AAM65823.1 unknown {Arabidopsi... 28 1.4
BQ138155 weakly similar to PIR|S55328|S553 serine-type carboxype... 28 1.4
TC79135 weakly similar to GP|22136510|gb|AAM91333.1 unknown prot... 26 4.2
TC89004 26 5.5
TC82795 similar to GP|18000068|gb|AAL54885.1 cytochrome P450-dep... 26 5.5
BQ150556 25 7.1
TC88286 similar to PIR|F86326|F86326 protein F18O14.5 [imported]... 25 7.1
TC81214 similar to GP|22136048|gb|AAM91606.1 unknown protein {Ar... 25 9.3
>TC86790 similar to PIR|A84861|A84861 probable amine oxidase [imported] -
Arabidopsis thaliana, partial (91%)
Length = 2198
Score = 188 bits (477), Expect = 6e-49
Identities = 94/114 (82%), Positives = 99/114 (86%)
Frame = +2
Query: 12 LLTKLIKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGCSYFL 71
L +IKFEPKL DWKEAAIADI VGVENKIILHFKNVFWPN +FL VVAE S GCSYFL
Sbjct: 1217 LKANVIKFEPKLPDWKEAAIADIGVGVENKIILHFKNVFWPNVEFLGVVAETSYGCSYFL 1396
Query: 72 NLHKAAGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKILPDASSPVTIIV 125
NLHKAAGH VLVYMP GR AKDIEKMSDEAAA+FAF QLKKILPDASSP+ +V
Sbjct: 1397 NLHKAAGHPVLVYMPAGRLAKDIEKMSDEAAADFAFTQLKKILPDASSPIQYLV 1558
>TC85753 similar to PIR|D96682|D96682 protein F1E22.18 [imported] -
Arabidopsis thaliana, partial (85%)
Length = 2024
Score = 135 bits (340), Expect = 5e-33
Identities = 67/114 (58%), Positives = 81/114 (70%)
Frame = +1
Query: 12 LLTKLIKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGCSYFL 71
L LI+FEP+L DWK +AI+D+ VG ENKI L F VFWP+ + + VVA S C YFL
Sbjct: 1219 LKANLIEFEPRLPDWKVSAISDLGVGNENKIALKFDKVFWPDVELMGVVAPTSYACGYFL 1398
Query: 72 NLHKAAGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKILPDASSPVTIIV 125
NLHKA G+ VLVYM GR A D+EK+SDE+AANF QLKK+ PDA PV +V
Sbjct: 1399 NLHKATGNPVLVYMAAGRFAYDLEKLSDESAANFVMLQLKKMFPDACEPVQYLV 1560
>TC83534 similar to GP|21553762|gb|AAM62855.1 putative amine oxidase
{Arabidopsis thaliana}, partial (38%)
Length = 576
Score = 129 bits (324), Expect = 4e-31
Identities = 63/83 (75%), Positives = 69/83 (82%)
Frame = +3
Query: 12 LLTKLIKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGCSYFL 71
L K I FEPKL DWKEAAIA++ VG+ENKIILHF+NVFWPN +FL VVA+ S GCSYFL
Sbjct: 327 LKAKRISFEPKLPDWKEAAIAELGVGLENKIILHFENVFWPNVEFLGVVADTSYGCSYFL 506
Query: 72 NLHKAAGHSVLVYMPVGRQAKDI 94
NLHKAA H VLVYMP GR AKDI
Sbjct: 507 NLHKAARHPVLVYMPSGRLAKDI 575
>BG447941 weakly similar to GP|18650598|gb| At2g43020/MFL8.12 {Arabidopsis
thaliana}, partial (4%)
Length = 658
Score = 28.5 bits (62), Expect = 0.84
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -3
Query: 63 ISNGCSYFLNLHKAAGHSVLVYM 85
IS G YFLNLHK+AG V V M
Sbjct: 482 ISYGRYYFLNLHKSAGDYVHVDM 414
>TC93823 weakly similar to GP|18650598|gb|AAL75899.1 At2g43020/MFL8.12
{Arabidopsis thaliana}, partial (4%)
Length = 749
Score = 28.5 bits (62), Expect = 0.84
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +2
Query: 63 ISNGCSYFLNLHKAAGHSVLVYM 85
IS G YFLNLHK+AG V V M
Sbjct: 149 ISYGRYYFLNLHKSAGDYVHVDM 217
>TC88312 similar to GP|21593856|gb|AAM65823.1 unknown {Arabidopsis
thaliana}, partial (63%)
Length = 1074
Score = 27.7 bits (60), Expect = 1.4
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Frame = +2
Query: 37 GVENKIILHFKNVFWPN-----------EDFLEVVAEISNGCSYFLNLHKAAGHSVLVYM 85
GV K+ L + WPN D + E +NG S+ LH + H +V+
Sbjct: 188 GVLQKVDLWYD---WPNGRNFNIIQNQLNDVVVYDLEWTNGTSFIYTLHPSDRHCKVVHF 358
Query: 86 PVG 88
PVG
Sbjct: 359 PVG 367
>BQ138155 weakly similar to PIR|S55328|S553 serine-type carboxypeptidase (EC
3.4.16.-) precursor - Aspergillus phoenicis, partial
(14%)
Length = 633
Score = 27.7 bits (60), Expect = 1.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 46 FKNVFWPNEDFLEVVAEISNGCSY 69
++N+F+ NE FLE V E + C+Y
Sbjct: 403 WQNLFYLNETFLEQVRERQDSCNY 474
>TC79135 weakly similar to GP|22136510|gb|AAM91333.1 unknown protein
{Arabidopsis thaliana}, partial (15%)
Length = 1821
Score = 26.2 bits (56), Expect = 4.2
Identities = 11/30 (36%), Positives = 15/30 (49%)
Frame = +1
Query: 59 VVAEISNGCSYFLNLHKAAGHSVLVYMPVG 88
+V +I GCS F N H G + +M G
Sbjct: 190 IVNQIGYGCSQFRNFHLIFGRK*MTWMKTG 279
>TC89004
Length = 794
Score = 25.8 bits (55), Expect = 5.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 26 WKEAAIADIRVGVENKIIL 44
WK+ + I++G+ENKII+
Sbjct: 615 WKQEFVIVIQIGLENKIII 671
>TC82795 similar to GP|18000068|gb|AAL54885.1 cytochrome P450-dependent
fatty acid hydroxylase {Vicia sativa}, partial (36%)
Length = 845
Score = 25.8 bits (55), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = +1
Query: 5 LIHTHARLLTKLIKFEPKLLDWKEAAIADI 34
+++THA L + + P +D KEAA D+
Sbjct: 106 MVYTHASLCESMRLYPPVPVDTKEAAYNDV 195
>BQ150556
Length = 304
Score = 25.4 bits (54), Expect = 7.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 38 VENKIILHFKNVFWPNEDFLEVV 60
V ++ + H + F+PN+DFL V+
Sbjct: 5 VYSRAMAHLREPFYPNQDFLGVL 73
>TC88286 similar to PIR|F86326|F86326 protein F18O14.5 [imported] -
Arabidopsis thaliana, partial (60%)
Length = 816
Score = 25.4 bits (54), Expect = 7.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 54 EDFLEVVAEISNGCSYFLNLHKAAGHSVLVYMP 86
ED+++++ + S C YFL L K ++ ++ P
Sbjct: 457 EDYVQMIKQRSAKCRYFLMLTKIMMSNMNIHFP 555
>TC81214 similar to GP|22136048|gb|AAM91606.1 unknown protein {Arabidopsis
thaliana}, partial (12%)
Length = 1163
Score = 25.0 bits (53), Expect = 9.3
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -3
Query: 68 SYFLNLHKAAGHSVLVYMPVGRQA 91
SYFL +K GH + + +G+QA
Sbjct: 351 SYFLLKNKRKGHKIKLRFQIGKQA 280
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.324 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,059,063
Number of Sequences: 36976
Number of extensions: 48778
Number of successful extensions: 351
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of query: 135
length of database: 9,014,727
effective HSP length: 86
effective length of query: 49
effective length of database: 5,834,791
effective search space: 285904759
effective search space used: 285904759
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC124972.10