BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124972.1 + phase: 0
(198 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC84129 weakly similar to PIR|T51492|T51492 hypothetical protein... 148 1e-36
TC89798 similar to PIR|T49936|T49936 hypothetical protein F17I14... 118 2e-27
TC78496 similar to PIR|T49936|T49936 hypothetical protein F17I14... 111 2e-25
TC87442 similar to GP|15809940|gb|AAL06897.1 AT4g05150/C17L7_70 ... 88 2e-18
TC85969 similar to GP|21553908|gb|AAM62991.1 unknown {Arabidopsi... 82 2e-16
TC88668 similar to GP|9293928|dbj|BAB01831.1 gb|AAF04880.1~gene_... 80 7e-16
TC78595 similar to PIR|T06718|T06718 hypothetical protein T29H11... 69 9e-13
TC78130 similar to GP|22652125|gb|AAN03626.1 BEL1-related homeot... 31 0.27
BG584779 weakly similar to GP|15289962|db hypothetical protein~s... 29 1.4
BQ144235 similar to GP|6692770|dbj| lacZ alpha {Cloning vector p... 28 3.0
CA860408 GP|10728858|g CG10600 gene product {Drosophila melanoga... 27 4.0
AW689878 similar to GP|4115937|gb| contains similarity to human ... 27 5.2
AA660619 similar to GP|10086480|gb| Unknown protein {Arabidopsis... 27 5.2
TC80870 similar to GP|10086480|gb|AAG12540.1 Unknown protein {Ar... 27 5.2
BQ141693 weakly similar to GP|160968|gb|AA eggshell protein {Sch... 27 6.8
TC93370 27 6.8
TC87042 similar to GP|13605827|gb|AAK32899.1 AT5g48380/MJE7_1 {A... 27 6.8
TC86471 weakly similar to PIR|F86432|F86432 hypothetical protein... 27 6.8
TC86255 similar to PIR|D84581|D84581 probable CCCH-type zinc fin... 27 6.8
TC83424 similar to GP|22653441|gb|AAN04061.1 Orf248 {Amoebidium ... 27 6.8
>TC84129 weakly similar to PIR|T51492|T51492 hypothetical protein T21H19_140
- Arabidopsis thaliana, partial (6%)
Length = 587
Score = 148 bits (374), Expect = 1e-36
Identities = 78/130 (60%), Positives = 97/130 (74%)
Frame = +1
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVCF 62
RVKLMI +G KI RL HD + YSYIGGD KI+TVDR+I FS L+ KLS+ FSD+C
Sbjct: 151 RVKLMIRFGGKIDLRL---HDDQNYSYIGGDTKILTVDRSIKFSSLIEKLSSMTFSDLCL 321
Query: 63 KYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNNKASFDSL 122
KYQ G +LD+LI V+N++DL+ MMFEYD MCR S KPA ++VFLFP+P+NN AS DSL
Sbjct: 322 KYQQPGGELDSLISVFNDDDLDSMMFEYDCMCRVSPKPARMKVFLFPLPVNN--ASSDSL 495
Query: 123 ASVDSLNSVQ 132
S +L V+
Sbjct: 496 DSAFNLAVVE 525
>TC89798 similar to PIR|T49936|T49936 hypothetical protein F17I14.190 -
Arabidopsis thaliana, partial (19%)
Length = 1225
Score = 118 bits (295), Expect = 2e-27
Identities = 71/148 (47%), Positives = 94/148 (62%), Gaps = 1/148 (0%)
Frame = +3
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFS-DVC 61
+ K M +YG KIQPR HD++ SY+GG+ KI+ VDRNI FS +++KLS+ + + DV
Sbjct: 165 KAKFMCSYGGKIQPRT---HDNQ-LSYVGGETKILAVDRNIKFSSMISKLSSLIEAHDVS 332
Query: 62 FKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNNKASFDS 121
FKYQL GEDLDALI V N++DL+HMM EYDR+ R S +PA +R+FLF +N DS
Sbjct: 333 FKYQLPGEDLDALISVTNDDDLDHMMNEYDRLYRASARPARMRLFLF---VN------DS 485
Query: 122 LASVDSLNSVQVFPFEEYSSPPTTPPHP 149
+ S D + V P T P P
Sbjct: 486 VPSPDPVKPSNVDYLFGIEKPVTVAPIP 569
>TC78496 similar to PIR|T49936|T49936 hypothetical protein F17I14.190 -
Arabidopsis thaliana, partial (23%)
Length = 1885
Score = 111 bits (277), Expect = 2e-25
Identities = 60/112 (53%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
Frame = +1
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTF---MFSD 59
+ K M +YG KIQPR HD++ SYIGGD KI+ VDR+I F ++KLST + D
Sbjct: 433 KAKFMCSYGGKIQPRS---HDNQ-LSYIGGDTKILAVDRSIKFQAFLSKLSTLCDALQQD 600
Query: 60 VCFKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVP 111
+ FKYQL GE+LDALI V E+DL HMM EYDR+ R S KP +R+F+F P
Sbjct: 601 ISFKYQLPGEELDALISVTTEDDLEHMMHEYDRLYRPSSKPVRMRLFIFIAP 756
>TC87442 similar to GP|15809940|gb|AAL06897.1 AT4g05150/C17L7_70
{Arabidopsis thaliana}, partial (26%)
Length = 1572
Score = 87.8 bits (216), Expect = 2e-18
Identities = 55/128 (42%), Positives = 81/128 (62%), Gaps = 3/128 (2%)
Frame = +3
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFM-FSDVC 61
RV+ M ++G KI PR + + Y+GGD +I+ V+R+I+FS L+ KLS S++
Sbjct: 165 RVRFMCSFGGKILPRPSD----NQLRYVGGDTRIVAVNRSISFSALVHKLSKLSGMSNIT 332
Query: 62 FKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKP--AWLRVFLFPVPINNNKASF 119
KYQL EDLDALI V +ED+++M+ EYDR+ + S+ P A LR+FLFP ++ S
Sbjct: 333 AKYQLPNEDLDALITVTTDEDVDNMIDEYDRVTQ-SENPRAARLRLFLFPEGEDSRTNSI 509
Query: 120 DSLASVDS 127
SL + S
Sbjct: 510 SSLLNGSS 533
>TC85969 similar to GP|21553908|gb|AAM62991.1 unknown {Arabidopsis
thaliana}, partial (31%)
Length = 2756
Score = 81.6 bits (200), Expect = 2e-16
Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
Frame = +2
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSD--V 60
+++LM +YG I PR T + Y+GGD +I+ V+R + DL +LS + +
Sbjct: 269 KLRLMCSYGGHIVPRPTD----KALCYVGGDTRIVVVERATSLGDLSTRLSKTLLNGRPF 436
Query: 61 CFKYQLLGEDLDALIPVYNEEDLNHMMFEYDR--MCRFSQKPAWLRVFLFP 109
FKYQL EDLD+LI V +EDL +M+ EYDR S KP+ +R+FLFP
Sbjct: 437 TFKYQLPNEDLDSLISVSTDEDLENMIDEYDRTNSTNSSLKPSRIRLFLFP 589
>TC88668 similar to GP|9293928|dbj|BAB01831.1
gb|AAF04880.1~gene_id:MFE16.2~similar to unknown protein
{Arabidopsis thaliana}, partial (39%)
Length = 802
Score = 79.7 bits (195), Expect = 7e-16
Identities = 49/129 (37%), Positives = 76/129 (57%), Gaps = 1/129 (0%)
Frame = +2
Query: 4 VKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVC-F 62
+K + +YG KI PR + + Y+GG N++++VDR+I FS+L+ KL S V
Sbjct: 194 IKFLCSYGGKILPR----YPDGKLRYLGGHNRVLSVDRSIQFSELLLKLKELCSSSVTQL 361
Query: 63 KYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNNKASFDSL 122
+ QL EDLDAL+ + ++EDL +++ EYDR Q ++ F+ P P ++NKAS L
Sbjct: 362 RCQLPAEDLDALVSITSDEDLINLIEEYDRTAS-PQSQLKIKAFISP-PRSSNKASKPPL 535
Query: 123 ASVDSLNSV 131
S+ SV
Sbjct: 536 PSLSKSASV 562
>TC78595 similar to PIR|T06718|T06718 hypothetical protein T29H11.240 -
Arabidopsis thaliana, partial (46%)
Length = 1059
Score = 69.3 bits (168), Expect = 9e-13
Identities = 35/89 (39%), Positives = 55/89 (61%)
Frame = +1
Query: 4 VKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVCFK 63
+K++ +YG KI+ R T Y+GG +++ VDR+I+FS+LM KL S V +
Sbjct: 157 IKILYSYGGKIRLRSTD----GELRYVGGHTRVLAVDRSISFSELMVKLEELCGSSVTLR 324
Query: 64 YQLLGEDLDALIPVYNEEDLNHMMFEYDR 92
QL DL+ LI + N+EDL +++ EY+R
Sbjct: 325 CQLPNGDLETLISITNDEDLTNIIDEYER 411
>TC78130 similar to GP|22652125|gb|AAN03626.1 BEL1-related homeotic protein 29
{Solanum tuberosum}, partial (58%)
Length = 2740
Score = 31.2 bits (69), Expect = 0.27
Identities = 16/30 (53%), Positives = 18/30 (59%)
Frame = -1
Query: 129 NSVQVFPFEEYSSPPTTPPHPFMATKDTVT 158
NSV FPF SPPT PP P A +D+ T
Sbjct: 1009 NSVLRFPFP---SPPTEPPSPLTAVEDSPT 929
>BG584779 weakly similar to GP|15289962|db hypothetical protein~similar to
NBS-LRR type resistance protein, partial (4%)
Length = 782
Score = 28.9 bits (63), Expect = 1.4
Identities = 23/78 (29%), Positives = 39/78 (49%)
Frame = +1
Query: 47 DLMAKLSTFMFSDVCFKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVF 106
DL+ L+ ++ D ++QLL D + E+ H+ F + + + P LR
Sbjct: 142 DLVHDLALYVSRD---EFQLLNSHSDNI-----SENALHLSFTKNYLFGKTPLPRGLRTI 297
Query: 107 LFPVPINNNKASFDSLAS 124
LFPV + NN+A ++L S
Sbjct: 298 LFPVGV-NNEAFLNTLVS 348
>BQ144235 similar to GP|6692770|dbj| lacZ alpha {Cloning vector pMG103},
partial (20%)
Length = 476
Score = 27.7 bits (60), Expect = 3.0
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +3
Query: 104 RVFLFPVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTPPHP 149
R+FLFPV F S +L Q FPF S P P HP
Sbjct: 225 RLFLFPV-------FFPFFISPPTLPFFQFFPFPPSSPIPCVPYHP 341
>CA860408 GP|10728858|g CG10600 gene product {Drosophila melanogaster},
partial (0%)
Length = 451
Score = 27.3 bits (59), Expect = 4.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 119 FDSLASVDSLNSVQVFPFEEYSSPPTTPPHPFMATKDTVTKAE 161
F SL+S+ S +S+ S+PP PP PF + + E
Sbjct: 122 FSSLSSLWSSSSISRHSSTRTSAPPPPPPPPFKPDQSVLLVGE 250
>AW689878 similar to GP|4115937|gb| contains similarity to human PCF11p
homolog (GB:AF046935) {Arabidopsis thaliana}, partial
(14%)
Length = 635
Score = 26.9 bits (58), Expect = 5.2
Identities = 12/39 (30%), Positives = 19/39 (47%)
Frame = +3
Query: 105 VFLFPVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPP 143
+FL P N SF +L S+ +FP ++ +PP
Sbjct: 51 LFLIYKPFQNPYVSFSPKFKTLTLISLSIFPISQFHTPP 167
>AA660619 similar to GP|10086480|gb| Unknown protein {Arabidopsis thaliana},
partial (26%)
Length = 543
Score = 26.9 bits (58), Expect = 5.2
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = +3
Query: 122 LASVDSLNSVQVFPFEEYSSPPTTPPHPF 150
L S S NS+Q+ ++SS TTPP F
Sbjct: 18 LQSNQSANSIQLLSTSDHSSQHTTPPFLF 104
>TC80870 similar to GP|10086480|gb|AAG12540.1 Unknown protein {Arabidopsis
thaliana}, partial (60%)
Length = 839
Score = 26.9 bits (58), Expect = 5.2
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = +3
Query: 122 LASVDSLNSVQVFPFEEYSSPPTTPPHPF 150
L S S NS+Q+ ++SS TTPP F
Sbjct: 15 LQSNQSANSIQLLSTSDHSSQHTTPPFLF 101
>BQ141693 weakly similar to GP|160968|gb|AA eggshell protein {Schistosoma
japonicum}, partial (12%)
Length = 1226
Score = 26.6 bits (57), Expect = 6.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 135 PFEEYSSPPTTPPHPFMATKDTV 157
P S+ P PPHPF+ +D V
Sbjct: 501 PLPALSTGPLVPPHPFVGREDFV 433
>TC93370
Length = 503
Score = 26.6 bits (57), Expect = 6.8
Identities = 17/41 (41%), Positives = 21/41 (50%)
Frame = +2
Query: 39 VDRNINFSDLMAKLSTFMFSDVCFKYQLLGEDLDALIPVYN 79
V R INF M S F+FS KY LL D ++P+ N
Sbjct: 236 VSRFINFLHFMFYFSKFIFSFTRSKYGLLQRD---MVPLSN 349
>TC87042 similar to GP|13605827|gb|AAK32899.1 AT5g48380/MJE7_1 {Arabidopsis
thaliana}, partial (51%)
Length = 2206
Score = 26.6 bits (57), Expect = 6.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 87 MFEYDRMCRFSQKPAW 102
+FE+DR+ FSQ+P W
Sbjct: 448 LFEHDRIRSFSQRPIW 495
>TC86471 weakly similar to PIR|F86432|F86432 hypothetical protein AAD25758.1
[imported] - Arabidopsis thaliana, partial (49%)
Length = 1461
Score = 26.6 bits (57), Expect = 6.8
Identities = 17/71 (23%), Positives = 32/71 (44%)
Frame = -3
Query: 109 PVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTPPHPFMATKDTVTKAEMKKFCGI 168
P P +N F +L +V + F+E +P PP P +A K + + + I
Sbjct: 889 PPPCSN---VFSTLKTVTISGTETNLIFQETITPKLAPPPPLIAQKTSSPIDSLSRHSSI 719
Query: 169 HVVNDEFEDIL 179
++ N ++I+
Sbjct: 718 NINNLSIQNII 686
>TC86255 similar to PIR|D84581|D84581 probable CCCH-type zinc finger protein
[imported] - Arabidopsis thaliana, partial (47%)
Length = 1508
Score = 26.6 bits (57), Expect = 6.8
Identities = 17/63 (26%), Positives = 31/63 (48%)
Frame = +3
Query: 92 RMCRFSQKPAWLRVFLFPVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTPPHPFM 151
R+C F+ P LR+ + + +S S+ S DS + + ++PP +PP M
Sbjct: 615 RVCFFAHTPEQLRL-----NVQQSPSSSRSVNSPDSYDGSPLRQMVTITTPPESPPMSPM 779
Query: 152 ATK 154
A++
Sbjct: 780 ASE 788
>TC83424 similar to GP|22653441|gb|AAN04061.1 Orf248 {Amoebidium
parasiticum}, partial (8%)
Length = 454
Score = 26.6 bits (57), Expect = 6.8
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +3
Query: 73 ALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNNKASFDSLASVDSLNSVQ 132
+L+ + N ++L+++ F F P + P P SF L S S++S+
Sbjct: 171 SLLSLINPKNLSYLSFISPTSLTFFLSPNSIAFINIPTP------SFP-LTSPPSISSIT 329
Query: 133 VFPFEEYSSPPTTPPH 148
Y+SPP P H
Sbjct: 330 KLTSLMYNSPPIFPQH 377
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.324 0.139 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,619,940
Number of Sequences: 36976
Number of extensions: 101115
Number of successful extensions: 688
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of query: 198
length of database: 9,014,727
effective HSP length: 91
effective length of query: 107
effective length of database: 5,649,911
effective search space: 604540477
effective search space used: 604540477
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Medicago: description of AC124972.1