TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124967.5 + phase: 0 /pseudo
         (233 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77518 similar to SP|Q94HF1|IF3B_ORYSA Eukaryotic translation i...   414  e-116
TC88394 similar to PIR|T47576|T47576 FKBP12 interacting protein ...    28  2.3
BQ751233 similar to GP|18307448|em probable low-affinity hexose ...    27  5.1
CA921199 similar to PIR|T51950|T51 DNA-directed RNA polymerase (...    27  6.7
TC86012 homologue to PIR|T00795|T00795 26S proteasome regulatory...    27  6.7

>TC77518 similar to SP|Q94HF1|IF3B_ORYSA Eukaryotic translation initiation
           factor 3 subunit 11 (eIF-3 p25) (eIF3k). [Rice] {Oryza
           sativa}, partial (94%)
          Length = 1020

 Score =  414 bits (1065), Expect = e-116
 Identities = 217/234 (92%), Positives = 219/234 (92%), Gaps = 1/234 (0%)
 Frame = +1

Query: 1   MGREAAAAAEKGQGGTAYTVEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLESNLCLLR 60
           MGREAAAAAEKGQGGTAYTVEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLESNLCLLR
Sbjct: 106 MGREAAAAAEKGQGGTAYTVEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLESNLCLLR 285

Query: 61  LYQFESEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVIANGRSSSRH*L-FCLTI* 119
           LYQFESEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERV    +  +   L   L   
Sbjct: 286 LYQFESEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETG 465

Query: 120 RFRQFWDEASKSRHIVEAVPGFEQAIQGYAIHVLSLTYQKIPRTVLAEAINVEGLSLDKF 179
           RFRQFWDEASKSRHIVEAVPGFEQAIQGYAIHVLSLTYQKIPRTVLAEAINVEGLSLDKF
Sbjct: 466 RFRQFWDEASKSRHIVEAVPGFEQAIQGYAIHVLSLTYQKIPRTVLAEAINVEGLSLDKF 645

Query: 180 LEHQVENSGWVIEKSQGKGQLIVLPRNEFNDPILKKNTADSVPLEHVTRIFPIL 233
           LEHQVENSGWVIEKSQGKGQLIVLPRNEFNDPILKKNTADSVPLEHVTRIFPIL
Sbjct: 646 LEHQVENSGWVIEKSQGKGQLIVLPRNEFNDPILKKNTADSVPLEHVTRIFPIL 807


>TC88394 similar to PIR|T47576|T47576 FKBP12 interacting protein (FIP37) -
            Arabidopsis thaliana, partial (56%)
          Length = 1285

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 14/42 (33%), Positives = 24/42 (56%)
 Frame = -2

Query: 42   NDQVSSQTYSLESNLCLLRLYQFESEKMSSQIVARILVKALM 83
            N+  S++T+ L S LC+LRL Q +  +    +  R L+  L+
Sbjct: 1002 NEFHSAKTFKLTSELCILRLLQCKFHRQFMYLSFRSLISDLL 877


>BQ751233 similar to GP|18307448|em probable low-affinity hexose transporter
           HXT3 {Neurospora crassa}, partial (30%)
          Length = 659

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 18/46 (39%), Positives = 23/46 (49%), Gaps = 7/46 (15%)
 Frame = -1

Query: 164 VLAEAINV-------EGLSLDKFLEHQVENSGWVIEKSQGKGQLIV 202
           VLAEA+ V         L+ D   EH+  N G   EK  GKG L++
Sbjct: 266 VLAEAVEVVLHEEESRDLTTD-ITEHEATNGGDETEKGSGKGDLLL 132


>CA921199 similar to PIR|T51950|T51 DNA-directed RNA polymerase (EC 2.7.7.6)
           23K chain [imported] - Arabidopsis thaliana, partial
           (49%)
          Length = 756

 Score = 26.9 bits (58), Expect = 6.7
 Identities = 15/35 (42%), Positives = 18/35 (50%)
 Frame = -3

Query: 41  VNDQVSSQTYSLESNLCLLRLYQFESEKMSSQIVA 75
           VN  VS+Q+YSL  NLC    +Q      S   VA
Sbjct: 493 VNAAVSNQSYSLCQNLCF*NCFQISLGSFSGGRVA 389


>TC86012 homologue to PIR|T00795|T00795 26S proteasome regulatory subunit
           [imported] - Arabidopsis thaliana, partial (59%)
          Length = 2134

 Score = 26.9 bits (58), Expect = 6.7
 Identities = 14/42 (33%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
 Frame = +3

Query: 57  CLLRLYQFESEKMSSQIVARILVKALMAMPAPDF-SLCLFLI 97
           C+   + F + +   Q V R+LVK    +P+PD+ S+C  L+
Sbjct: 702 CIHVSHSFVNLREYRQEVLRLLVKVFQKLPSPDYLSICQCLM 827


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.325    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,568,076
Number of Sequences: 36976
Number of extensions: 85088
Number of successful extensions: 402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of query: 233
length of database: 9,014,727
effective HSP length: 93
effective length of query: 140
effective length of database: 5,575,959
effective search space: 780634260
effective search space used: 780634260
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)