TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124967.1 - phase: 0 /pseudo
         (462 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci...   147  1e-35
AL366725                                                              104  8e-23

>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
           arietinum}, partial (8%)
          Length = 516

 Score =  147 bits (370), Expect = 1e-35
 Identities = 87/162 (53%), Positives = 103/162 (62%), Gaps = 2/162 (1%)
 Frame = +1

Query: 1   CCCT*GCSSSCSTATAS--W*WRSEDAGDLFEKSSPSIQRKV*SRWCPVMVEGSGKDFQS 58
           CCC *G SSSCSTAT    W*  ++DA D  E+SS +IQ  V S WC  + EG  K+  S
Sbjct: 28  CCCA*GGSSSCSTAT*G*YW**WNQDARDFLEESSTNIQG*VCS*WCLEVAEGD*KNIPS 207

Query: 59  HAVL*SAKGAVRDAHVG*GGRRLVGKFVTSVGTEWSCSDLGSVQKGISE*VFPGRCSR*E 118
           HA+ *  +GAV DAHV * GR LV  FV   G    C +LG VQ+G+S  VF   C  *E
Sbjct: 208 HAMF*DTEGAVWDAHVS*RGR*LVD*FVACSGAG*CCGNLGHVQEGVSGQVFSRGCQG*E 387

Query: 119 GD*IPGVEAG*YVCC*VCCKICGACKVLSPLCPGDS*ILQVH 160
            D*I GVE G*+VC  VCCK+CG C +L  L  GDS*+LQV+
Sbjct: 388 RD*ISGVETG*HVCHRVCCKVCGTCHILPSLQCGDS*VLQVY 513


>AL366725 
          Length = 485

 Score =  104 bits (259), Expect = 8e-23
 Identities = 76/161 (47%), Positives = 98/161 (60%)
 Frame = +1

Query: 144 KVLSPLCPGDS*ILQVHKV*EWLES*HQESHRIPAD*NFL*FGESL*DLRGGHQSSL*SD 203
           KVLS LC  D *+L++H+V EW E+ HQE +RIP   +F *F E L +LRGG+  S    
Sbjct: 1   KVLSALCC*DC*VLEMHQVREWFEARHQEGNRIPTAPSFP*FSEYLQNLRGGY*GS*QGC 180

Query: 204 E*AKR*GTSESS*TV*CPD**G*AET***EEAE*EGCSC*DSVL*VWRERSQE*RLYQG* 263
           E*A+  G  ES * +*CP **G  E   *  +  EGCSC D +  +WRER QE* L    
Sbjct: 181 E*AEDQGPIESP*AL*CPC**GQTENGR**AS*EEGCSCGDCLFQLWRERPQE*CLS*RD 360

Query: 264 EEVFQMWTEGSHASRLQAR*CCVL*L**RGPHQYSVHTAEE 304
           +E+  +  EGS+ S LQA+* CVL L  RG + + +  A E
Sbjct: 361 QEMCPV*QEGSYCS*LQAK*YCVLQLQRRGSYWFPMQAA*E 483


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.376    0.169    0.742 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,950,217
Number of Sequences: 36976
Number of extensions: 290445
Number of successful extensions: 5845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1777
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 3768
Number of HSP's gapped (non-prelim): 2338
length of query: 462
length of database: 9,014,727
effective HSP length: 99
effective length of query: 363
effective length of database: 5,354,103
effective search space: 1943539389
effective search space used: 1943539389
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.5 bits)
S2: 60 (27.7 bits)