BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124963.10 - phase: 0 /pseudo
(214 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non... 63 7e-11
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot... 47 7e-06
BF650593 32 0.18
AI737603 32 0.18
BQ135858 similar to GP|23491723|db formin homology protein A {Di... 30 0.91
BG644703 similar to GP|5679529|emb| dJ129L7.1 (PUTATIVE novel pr... 28 2.6
AI974748 27 4.5
BQ141541 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, pa... 27 4.5
TC81772 27 4.5
TC80988 27 5.9
BF649423 homologue to GP|4309760|gb|A unknown protein {Arabidops... 27 7.7
TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalizati... 27 7.7
TC88275 similar to GP|22022577|gb|AAM83245.1 AT5g54930/MBG8_20 {... 27 7.7
TC78754 homologue to GP|4099921|gb|AAD09248.1| EREBP-3 homolog {... 27 7.7
TC79840 similar to PIR|A86211|A86211 hypothetical protein [impor... 27 7.7
>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
retroelement reverse transcriptase {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 1262
Score = 63.2 bits (152), Expect = 7e-11
Identities = 29/74 (39%), Positives = 40/74 (53%), Gaps = 6/74 (8%)
Frame = +3
Query: 141 GGNLCSGGRDGSAWWRNIAALPS---EG---WFHNNVSRSLGDGSSVLFWTDVWVGELSL 194
GG LC GGR S WW+ I + EG WF N+ +GDG FW D W G++ L
Sbjct: 144 GGWLCEGGRQSSMWWKTICKVREGVGEGVGNWFEENIRMVVGDGRDAFFWYDTWAGDVPL 323
Query: 195 HDRFSRLYELSLLK 208
++ RL +L++ K
Sbjct: 324 RLKYPRLLDLAMDK 365
Score = 33.5 bits (75), Expect = 0.063
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 7/36 (19%)
Frame = +1
Query: 121 VLVDRDSLWFRVLAARNGVEGG-------NLCSGGR 149
+LVD++ LW RVL AR G EGG +L GGR
Sbjct: 85 LLVDKEGLWHRVLKARYGEEGGGFVRVVDSLLCGGR 192
>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
dioxygenase1 {Pisum sativum}, partial (43%)
Length = 1865
Score = 46.6 bits (109), Expect = 7e-06
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -2
Query: 152 SAWWRNIAALPSEG---WFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLY 202
S WW+++ +L G WF + R +GDG S FW D W + L + F R +
Sbjct: 778 SRWWKDLMSLEEVGRVRWFPRELIRKVGDGRSSFFWKDAWDSSVPLRESFPRAF 617
>BF650593
Length = 486
Score = 32.0 bits (71), Expect = 0.18
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 128 LWFRVLAARNGVEGGNLCSGGRDGSAWWRNIAALPSEG 165
LWFR L + G+ G++ R S WW++I + G
Sbjct: 88 LWFRALVNKYGLNRGSITIENRGVSLWWKDICYIDFGG 201
>AI737603
Length = 531
Score = 32.0 bits (71), Expect = 0.18
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Frame = -2
Query: 148 GRDGSAWWRNIAALPSE------GWFHNNVSRSLGDGSS 180
GR S+ WR ++A+ S GWF N+ R +G GSS
Sbjct: 125 GRRDSSVWRMLSAIRSGVGSGEGGWFEENIRRMVGGGSS 9
>BQ135858 similar to GP|23491723|db formin homology protein A {Dictyostelium
discoideum}, partial (4%)
Length = 1033
Score = 29.6 bits (65), Expect = 0.91
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2
Query: 69 YFKFFFFFWGRG 80
+FKFFFFFWG G
Sbjct: 231 FFKFFFFFWGGG 196
>BG644703 similar to GP|5679529|emb| dJ129L7.1 (PUTATIVE novel protein) {Homo
sapiens}, partial (8%)
Length = 689
Score = 28.1 bits (61), Expect = 2.6
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -1
Query: 55 VLGRSVRYCLLY*IYFKFF--FFFWGRG 80
V+G+ VR + + I F FF FFFWG G
Sbjct: 113 VIGKLVR*DMTFPIIFNFFLFFFFWGGG 30
>AI974748
Length = 261
Score = 27.3 bits (59), Expect = 4.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 175 LGDGSSVLFWTDVWVGEL 192
+G+G S+ FWTD W+ L
Sbjct: 1 VGNGESIYFWTDRWLAML 54
>BQ141541 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, partial (2%)
Length = 1320
Score = 27.3 bits (59), Expect = 4.5
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Frame = -3
Query: 57 GRSVRYCLLY*I---------YFKFFFFFWGRGE 81
GRS YCL + +F FFFFF+G GE
Sbjct: 271 GRSPLYCLSLLLAFSIWRGPFFFDFFFFFFGVGE 170
>TC81772
Length = 982
Score = 27.3 bits (59), Expect = 4.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 175 LGDGSSVLFWTDVWV 189
+GDGSS+ WTD W+
Sbjct: 639 IGDGSSINIWTDHWL 595
>TC80988
Length = 843
Score = 26.9 bits (58), Expect = 5.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 70 FKFFFFFWGRGERRPQENYLG*LEFC 95
+ F F WG G R + + LG +E+C
Sbjct: 520 YTFTCFEWGNGRSRGKRSLLGFIEYC 443
>BF649423 homologue to GP|4309760|gb|A unknown protein {Arabidopsis
thaliana}, partial (16%)
Length = 570
Score = 26.6 bits (57), Expect = 7.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 162 PSEGWFHNNVSRSLGDGSSVLFWTD 186
P+ GW +++S +LG+ + FW D
Sbjct: 236 PN*GWVSHHLSSNLGNQCQIKFWPD 162
>TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalization response 1
{Arabidopsis thaliana}, partial (37%)
Length = 1760
Score = 26.6 bits (57), Expect = 7.7
Identities = 13/39 (33%), Positives = 20/39 (50%), Gaps = 5/39 (12%)
Frame = +2
Query: 150 DGSAW-----WRNIAALPSEGWFHNNVSRSLGDGSSVLF 183
DG W +R A S+GWF ++ +LG+G +F
Sbjct: 1205 DGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVF 1321
>TC88275 similar to GP|22022577|gb|AAM83245.1 AT5g54930/MBG8_20 {Arabidopsis
thaliana}, partial (20%)
Length = 599
Score = 26.6 bits (57), Expect = 7.7
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 11/57 (19%)
Frame = -3
Query: 42 SWFTNWR-EC*SVG-----VLGRS-----VRYCLLY*IYFKFFFFFWGRGERRPQEN 87
SWF ++ +C ++G VLG + +R C+ + F+FFFFF+ R + N
Sbjct: 183 SWFISFHFQCWNIGCKTNTVLGGADWI**IRVCVERKLRFEFFFFFFC*NARNKKRN 13
>TC78754 homologue to GP|4099921|gb|AAD09248.1| EREBP-3 homolog
{Stylosanthes hamata}, partial (46%)
Length = 1038
Score = 26.6 bits (57), Expect = 7.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -3
Query: 130 FRVLAARNGVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWV 189
F + A G + + G + W+ A L S G SRS + S+VL W +W+
Sbjct: 523 FTMPARNTGSKQNVWLTAGIGVNRCWKAGAKLRSSGEESAAASRSRLEDSTVLLWLGLWI 344
>TC79840 similar to PIR|A86211|A86211 hypothetical protein [imported] -
Arabidopsis thaliana, partial (22%)
Length = 841
Score = 26.6 bits (57), Expect = 7.7
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = -3
Query: 161 LPSEGWFHNNVSRSLGDGSSVLFWTD----VWVGELSLHDRFSRLYEL--SLLK 208
LPS+ WF + ++ S D S + TD + +GE +H R + + + SLLK
Sbjct: 542 LPSKTWFVSCITSSTSDCPSSMLTTDDMVGLCIGETRVHKRATLIMIIASSLLK 381
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.339 0.152 0.545
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,699,572
Number of Sequences: 36976
Number of extensions: 154768
Number of successful extensions: 1506
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of query: 214
length of database: 9,014,727
effective HSP length: 92
effective length of query: 122
effective length of database: 5,612,935
effective search space: 684778070
effective search space used: 684778070
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC124963.10