TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124953.2 + phase: 0 
         (53 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis ...    60  1e-10
AJ497367 similar to GP|14140286|gb putative helicase {Oryza sati...    55  6e-09
BM814840 weakly similar to GP|15128241|db helicase-like protein ...    50  2e-07
CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292...    45  6e-06
TC86190 weakly similar to PIR|T08454|T08454 hypothetical protein...    26  2.8
TC84018 similar to PIR|F86150|F86150 hypothetical protein AAF764...    26  2.8
BQ144031 similar to GP|3132295|dbj| long ORF {TT virus}, partial...    26  3.6
TC91970 similar to GP|6002766|gb|AAF00131.1| class II chitinase ...    25  6.2

>CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis thaliana},
           partial (3%)
          Length = 748

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 30/35 (85%), Positives = 32/35 (90%)
 Frame = -1

Query: 19  RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
           RV+SR GLKIL+ DENGDCIDNTTNVVYK VFQNV
Sbjct: 238 RVSSRNGLKILMIDENGDCIDNTTNVVYK-VFQNV 137


>AJ497367 similar to GP|14140286|gb putative helicase {Oryza sativa
          (japonica cultivar-group)}, partial (1%)
          Length = 543

 Score = 55.1 bits (131), Expect = 6e-09
 Identities = 24/35 (68%), Positives = 32/35 (90%)
 Frame = +1

Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
          RVTSRKGLKIL+  E+G+C++ T+NVVYKEVF+N+
Sbjct: 52 RVTSRKGLKILLAHEDGNCMNTTSNVVYKEVFRNL 156


>BM814840 weakly similar to GP|15128241|db helicase-like protein {Oryza
           sativa (japonica cultivar-group)}, partial (6%)
          Length = 733

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 24/35 (68%), Positives = 27/35 (76%)
 Frame = +3

Query: 19  RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
           RV SR GLKILITDENG    +T NVVY+EVFQ +
Sbjct: 303 RVKSRSGLKILITDENGSPSSSTVNVVYQEVFQKI 407


>CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 572

 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 23/37 (62%), Positives = 32/37 (86%), Gaps = 2/37 (5%)
 Frame = -2

Query: 19  RVTSRKGLKILITDENG--DCIDNTTNVVYKEVFQNV 53
           RVTSR+GLKILI++++G  DC+  T+NVVY+EVF N+
Sbjct: 253 RVTSREGLKILISNDDGEDDCV--TSNVVYREVFHNL 149


>TC86190 weakly similar to PIR|T08454|T08454 hypothetical protein F22O6.170
           - Arabidopsis thaliana, partial (60%)
          Length = 1159

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 12/31 (38%), Positives = 19/31 (60%)
 Frame = +1

Query: 22  SRKGLKILITDENGDCIDNTTNVVYKEVFQN 52
           S  GLK L+   NG+ I++ T V+ K  F++
Sbjct: 661 SEAGLKKLLAFRNGEFIESLTKVMQKGFFES 753


>TC84018 similar to PIR|F86150|F86150 hypothetical protein AAF76467.1
           [imported] - Arabidopsis thaliana, partial (38%)
          Length = 711

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 23  RKGLKILITDENGDCIDNTTN 43
           RK L IL  D NGD + +TTN
Sbjct: 417 RKNLAILACDFNGDGVPSTTN 355


>BQ144031 similar to GP|3132295|dbj| long ORF {TT virus}, partial (20%)
          Length = 1411

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 1   MLSVCCQQALILFFWADYRVTSRKGL 26
           ++S+CC  +L LFF+   R   R GL
Sbjct: 605 VISICCSISLFLFFFRLCRCVIRVGL 682


>TC91970 similar to GP|6002766|gb|AAF00131.1| class II chitinase {Fragaria x
           ananassa}, partial (69%)
          Length = 681

 Score = 25.0 bits (53), Expect = 6.2
 Identities = 13/32 (40%), Positives = 19/32 (58%)
 Frame = +2

Query: 21  TSRKGLKILITDENGDCIDNTTNVVYKEVFQN 52
           TSR+GL+I   +E+ DCI       + + FQN
Sbjct: 497 TSREGLRI*WAEESRDCIKQ-----FSDCFQN 577


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.327    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,755,711
Number of Sequences: 36976
Number of extensions: 14829
Number of successful extensions: 106
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of query: 53
length of database: 9,014,727
effective HSP length: 29
effective length of query: 24
effective length of database: 7,942,423
effective search space: 190618152
effective search space used: 190618152
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)