BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124217.9 + phase: 0 /pseudo
(145 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CA920486 similar to GP|8096317|dbj EST AU082557(R0845) correspon... 27 2.2
TC83032 weakly similar to GP|11994727|dbj|BAB03043. pyruvate kin... 27 2.9
BE320057 weakly similar to GP|18033111|gb functional candidate r... 27 2.9
BM815073 weakly similar to GP|18033111|gb functional candidate r... 27 2.9
BQ150348 27 2.9
BM814058 27 3.8
TC86054 beta-amyrin synthase [Medicago truncatula] 27 3.8
BG454743 27 3.8
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 26 6.4
TC85352 weakly similar to GP|9279599|dbj|BAB01057.1 contains sim... 26 6.4
TC86472 similar to GP|16930507|gb|AAL31939.1 At1g30700/T5I8_15 {... 26 6.4
TC93891 similar to GP|22138482|gb|AAM93466.1 hypothetical protei... 26 6.4
AW257403 weakly similar to GP|12039277|gb| hypothetical protein ... 25 8.4
TC79398 similar to PIR|A86316|A86316 protein T10O22.3 [imported]... 25 8.4
TC76980 similar to GP|14487954|gb|AAK63815.1 early light inducib... 25 8.4
TC80788 similar to GP|16417948|gb|AAL18926.1 phosphomevalonate k... 25 8.4
TC77848 similar to PIR|F86296|F86296 hypothetical protein AAF185... 25 8.4
>CA920486 similar to GP|8096317|dbj EST AU082557(R0845) corresponds to a
region of the predicted gene.~Similar to Arabidopsis
thaliana, partial (40%)
Length = 747
Score = 27.3 bits (59), Expect = 2.2
Identities = 25/55 (45%), Positives = 32/55 (57%), Gaps = 6/55 (10%)
Frame = +3
Query: 44 TTKLRCL*RIKR--RQLSFSHLVCSHFGGC-LS--VCVMRLLL-SKGACLSSSLT 92
T +LR +* R RQ S + + S G LS +CV+ LLL SKG CL SS+T
Sbjct: 435 TFRLRIM*ISSRVTRQTSIVYFLHSRMGSKKLSNLLCVLLLLLNSKGHCLDSSIT 599
>TC83032 weakly similar to GP|11994727|dbj|BAB03043. pyruvate kinase
{Arabidopsis thaliana}, partial (34%)
Length = 1046
Score = 26.9 bits (58), Expect = 2.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 66 SHFGGCLSVCVMRLLLSKGACLSSSLTCLRRTY 98
S F C +C+ RLL S CLS S+ C ++T+
Sbjct: 721 SFFPPCYEICISRLLNSLLLCLSVSV-CSQQTW 816
>BE320057 weakly similar to GP|18033111|gb functional candidate resistance
protein KR1 {Glycine max}, partial (8%)
Length = 577
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 88 SSSLTCLRRTYRYL 101
SSS+TC RR+YRY+
Sbjct: 495 SSSITCCRRSYRYV 454
>BM815073 weakly similar to GP|18033111|gb functional candidate resistance
protein KR1 {Glycine max}, partial (4%)
Length = 516
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -1
Query: 88 SSSLTCLRRTYRYL 101
SSS+TC RR+YRY+
Sbjct: 477 SSSITCCRRSYRYV 436
>BQ150348
Length = 1239
Score = 26.9 bits (58), Expect = 2.9
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 66 SHFGGC-LSVCVMRLLLSKGACLSSSLTCLRRTY 98
SH C ++VC RL L AC S L +RRTY
Sbjct: 1087 SHTS*CSMTVCSRRLSLL*HACTQSRLDKIRRTY 986
>BM814058
Length = 574
Score = 26.6 bits (57), Expect = 3.8
Identities = 11/31 (35%), Positives = 19/31 (60%)
Frame = +3
Query: 86 CLSSSLTCLRRTYRYLWRTFLFWVSPLIIVY 116
C+S+ + C R ++L RT+ F VS I++
Sbjct: 468 CISAYVCCAERLSKFLTRTYKFSVSFSFIIF 560
>TC86054 beta-amyrin synthase [Medicago truncatula]
Length = 2784
Score = 26.6 bits (57), Expect = 3.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 91 LTCLRRTYRYLWRTFLFWVSPLIIV 115
L C + R W TF FW+ LII+
Sbjct: 2709 LECCYISLRQTWPTFFFWLFELIIL 2635
>BG454743
Length = 655
Score = 26.6 bits (57), Expect = 3.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 2 CIDYRRLIRPEGW 14
C++YRRL RPE W
Sbjct: 44 CVEYRRLPRPECW 6
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 25.8 bits (55), Expect = 6.4
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -1
Query: 48 RCL*RIKRRQLSFSHLVCS--HFGGCLSV--CVMRLLLSKGACL 87
R + RI LSF++ VCS HF V MRL ++GACL
Sbjct: 619 RLIMRILPPSLSFTNKVCSYGHFSNPSLVK*ASMRLYHARGACL 488
>TC85352 weakly similar to GP|9279599|dbj|BAB01057.1 contains similarity to
transcription-associated zinc ribbon
protein~gene_id:MPE11.11, partial (88%)
Length = 899
Score = 25.8 bits (55), Expect = 6.4
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = -3
Query: 73 SVCVMRLLLSKGACLSSSLTCLRRTY 98
++ +++L+ + GAC+ SSL +RR++
Sbjct: 558 NLILLKLMTTPGACVESSLPFIRRSH 481
>TC86472 similar to GP|16930507|gb|AAL31939.1 At1g30700/T5I8_15 {Arabidopsis
thaliana}, partial (86%)
Length = 1769
Score = 25.8 bits (55), Expect = 6.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 88 SSSLTCLRRTYRYLWRTFLFW 108
SS + R +YR+ WRTF +W
Sbjct: 543 SSWFSGRRLSYRWCWRTFKWW 605
>TC93891 similar to GP|22138482|gb|AAM93466.1 hypothetical protein {Oryza
sativa (japonica cultivar-group)}, partial (6%)
Length = 451
Score = 25.8 bits (55), Expect = 6.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 87 LSSSLTCLRRTYRYLWRTFLFWVSPLIIVY 116
LSS L+ YRY + TF++ +SPL+I +
Sbjct: 179 LSSDLSSRTLLYRYRYNTFVY-LSPLLIKF 265
>AW257403 weakly similar to GP|12039277|gb| hypothetical protein {Oryza
sativa}, partial (29%)
Length = 555
Score = 25.4 bits (54), Expect = 8.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 60 FSHLVCSHFGGCLSVCVMRLLLSKGACL 87
FS+ C H L VCV+ LL G CL
Sbjct: 323 FSYSSCHHQNLVLCVCVLTLLDLVGFCL 406
>TC79398 similar to PIR|A86316|A86316 protein T10O22.3 [imported] -
Arabidopsis thaliana, partial (74%)
Length = 1110
Score = 25.4 bits (54), Expect = 8.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 67 HFGGCLSVCVMRLLLSKGACLSSSLTCLRRTYRYLW 102
HFG V V+RL+ CLS S + + Y ++W
Sbjct: 706 HFG----VGVVRLIFDSFECLSLSF*LIGKKYSHIW 801
>TC76980 similar to GP|14487954|gb|AAK63815.1 early light inducible protein
{Medicago sativa}, partial (87%)
Length = 833
Score = 25.4 bits (54), Expect = 8.4
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = +3
Query: 54 KRRQLSFSHLVCSHFGGCLSVCVMRLLL 81
K R S +LV G C+ VC +LLL
Sbjct: 423 KGRVCSIKYLVVESHGSCIQVCC*QLLL 506
>TC80788 similar to GP|16417948|gb|AAL18926.1 phosphomevalonate kinase
{Hevea brasiliensis}, partial (32%)
Length = 795
Score = 25.4 bits (54), Expect = 8.4
Identities = 14/44 (31%), Positives = 23/44 (51%)
Frame = -2
Query: 53 IKRRQLSFSHLVCSHFGGCLSVCVMRLLLSKGACLSSSLTCLRR 96
++ QLS + L SH C L+K +C+S++ CLR+
Sbjct: 170 LRMLQLSITDLYASH-------CSFANFLNKFSCISNAEICLRQ 60
>TC77848 similar to PIR|F86296|F86296 hypothetical protein AAF18512.1
[imported] - Arabidopsis thaliana, complete
Length = 1592
Score = 25.4 bits (54), Expect = 8.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 71 CLSVCVMRLLLSKGACLSSSLTCLRRTYRYLWRTFLF 107
C C LL L SSL+ L + LW +LF
Sbjct: 682 CFICCFTCLLRGHFCVLGSSLSFLHAIWTRLWNQYLF 792
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.349 0.155 0.577
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,650,553
Number of Sequences: 36976
Number of extensions: 124500
Number of successful extensions: 1371
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of query: 145
length of database: 9,014,727
effective HSP length: 87
effective length of query: 58
effective length of database: 5,797,815
effective search space: 336273270
effective search space used: 336273270
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 53 (25.0 bits)
Medicago: description of AC124217.9