TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124217.1 - phase: 0 /pseudo
         (1312 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia...    38  0.029
TC78821 similar to GP|15293173|gb|AAK93697.1 unknown protein {Ar...    31  3.6
TC85750 nodulin 25                                                     31  3.6
TC82813                                                                30  4.7
TC85575 similar to PIR|D86410|D86410 protein F3M18.16 [imported]...    30  4.7

>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana
           chromosome II BAC F26H6; putative retroelement pol
           polyprotein, partial (1%)
          Length = 488

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +1

Query: 780 FLVVASKANYNLLLGTEWIHDVGDVPSTMH*RL 812
           F V+   A+Y+ LLG  WIHD G V ST+H +L
Sbjct: 7   FQVMDINASYSCLLGRPWIHDAGAVTSTLHQKL 105


>TC78821 similar to GP|15293173|gb|AAK93697.1 unknown protein {Arabidopsis
            thaliana}, partial (81%)
          Length = 1572

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 630  FTDFEADFDVICVVLILPIE*DVTSEVTEDEEDFIKEMVVHK-TMCYYVMNNGCVEGQHA 688
            F +    +D++C ++  P   +V  E+        K  VV K ++C+Y   +GC++G HA
Sbjct: 1394 FPELTLSYDMLCTIIENPC--NVRGEIRRH-----KIYVVAKFSLCFYFFLSGCIKGMHA 1552


>TC85750 nodulin 25
          Length = 1132

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 26/95 (27%), Positives = 42/95 (43%), Gaps = 4/95 (4%)
 Frame = +3

Query: 481 NKRGVPYKDTPPTRHQNRGQVRTFTPSSKS---PTEKWV-FSSGKKSSYTSPPAKWVKRF 536
           N++G+ YKDT   RH N G +   T + K    P++  +  SS  +     P  + ++  
Sbjct: 384 NQKGLEYKDT---RH-NDGSIEISTRTEKDNFIPSDGPIEISSRTEKKNVIPSDESIEIS 551

Query: 537 TGTDNQNKAPVSKKFAYNNNYKGKNPMTKT*WRRF 571
           TGT+ +N  P           + KN +    WR F
Sbjct: 552 TGTEKENFIPSVGPIDLTTGAQKKNFIPSVDWRTF 656


>TC82813 
          Length = 788

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
 Frame = -3

Query: 505 TPSSKSPTEKWVFSSGKKSSYTSPPAKWVKRFTGTDNQNKAPVSKKFAYNNNYKGKNPMT 564
           T    SPTEKW+ + G+K S++       +  T   N+   P           +GK P  
Sbjct: 321 TQKQASPTEKWIINVGQKLSWSKNTFSETRVITPESNRIIHP-----------EGKQP-- 181

Query: 565 KT*WRRFQRQKKVDGLKYVTNN---DKGKNKQMETFKMIR 601
                  +++K+ D LKY   N    K  N  +  F MIR
Sbjct: 180 -------RKEKEEDPLKYSFMNIAEYKILNVILRKFAMIR 82


>TC85575 similar to PIR|D86410|D86410 protein F3M18.16 [imported] -
           Arabidopsis thaliana, partial (15%)
          Length = 1225

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
 Frame = +3

Query: 473 DNKPKFIFNKRGVPYKDTPPTRHQNRGQVRTFTPSSKSPTEKWVFSSGKKSSYTSPPAKW 532
           +NK    FN     Y+     ++ N       TP+S S +    + + K SS +   +  
Sbjct: 369 NNKVNNYFN-----YQQDSDNKYPNEVSDTKLTPTSYSSSSNNNYDNNKYSSSSDDFSN- 530

Query: 533 VKRF-----TGTDNQNKAPVSKKFAYNNNYKGKNPMTK 565
            K+F        +NQN      K+ YNNN K  +  TK
Sbjct: 531 -KKFPEEGYNSNENQNNNNNDNKYFYNNNNKDSSSNTK 641


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.358    0.160    0.568 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,876,290
Number of Sequences: 36976
Number of extensions: 546194
Number of successful extensions: 5783
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1733
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 3981
Number of HSP's gapped (non-prelim): 2233
length of query: 1312
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1204
effective length of database: 5,021,319
effective search space: 6045668076
effective search space used: 6045668076
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 64 (29.3 bits)