BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124215.1 + phase: 0
(45 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC81909 homologue to GP|13365610|dbj|BAB39155. SCARECROW {Pisum ... 103 1e-23
BE240008 similar to GP|9757937|dbj| SCARECROW gene regulator-lik... 59 5e-10
AL386880 weakly similar to GP|13365610|dbj SCARECROW {Pisum sati... 42 5e-05
TC77707 weakly similar to GP|8777405|dbj|BAA96995.1 SCARECROW ge... 39 6e-04
TC80896 similar to GP|20334379|gb|AAM19210.1 GAI-like protein 1 ... 36 0.003
AJ499899 weakly similar to GP|20161620|dbj gibberellin response ... 35 0.005
TC76809 similar to GP|20334379|gb|AAM19210.1 GAI-like protein 1 ... 35 0.005
TC79937 similar to GP|14517552|gb|AAK62666.1 F17J6.12/F17J6.12 {... 35 0.008
TC77063 similar to GP|20334379|gb|AAM19210.1 GAI-like protein 1 ... 32 0.040
TC77716 similar to GP|20465587|gb|AAM20276.1 unknown protein {Ar... 32 0.053
TC79190 similar to PIR|E96542|E96542 scarecrow-like protein [imp... 31 0.12
TC90401 similar to GP|9454566|gb|AAF87889.1| scarecrow-like 3 pr... 27 1.3
TC86258 similar to GP|16930433|gb|AAL31902.1 AT4g17230/dl4650c {... 27 1.7
AW691391 similar to GP|16604643|gb unknown protein {Arabidopsis ... 27 2.2
BF648034 similar to GP|16604643|gb unknown protein {Arabidopsis ... 27 2.2
TC85780 similar to SP|P49608|ACOC_CUCMA Aconitate hydratase cyt... 26 3.8
TC77938 similar to GP|11994774|dbj|BAB03164. gene_id:MZE19.4~unk... 26 3.8
TC92932 similar to PIR|D96656|D96656 hypothetical protein F16M19... 26 3.8
AL388510 25 4.9
BF647967 similar to GP|9757840|dbj gb|AAF24960.1~gene_id:MMG4.16... 25 4.9
>TC81909 homologue to GP|13365610|dbj|BAB39155. SCARECROW {Pisum sativum},
partial (16%)
Length = 1040
Score = 103 bits (257), Expect = 1e-23
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = +2
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPHHN 45
MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPHHN
Sbjct: 284 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPHHN 418
>BE240008 similar to GP|9757937|dbj| SCARECROW gene regulator-like protein
{Arabidopsis thaliana}, partial (13%)
Length = 397
Score = 58.5 bits (140), Expect = 5e-10
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
MFP GYTLVE+NG LKLGWKDL LL ASAW+P
Sbjct: 140 MFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 238
>AL386880 weakly similar to GP|13365610|dbj SCARECROW {Pisum sativum},
partial (4%)
Length = 509
Score = 42.0 bits (97), Expect = 5e-05
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +1
Query: 3 PSEGYTLVEDNGILKLGWKDLCLLTASAW 31
P+ GY+L + +G+L+LGWKD L TAS+W
Sbjct: 325 PAHGYSLAQVDGMLRLGWKDTSLYTASSW 411
>TC77707 weakly similar to GP|8777405|dbj|BAA96995.1 SCARECROW gene
regulator-like {Arabidopsis thaliana}, partial (65%)
Length = 2161
Score = 38.5 bits (88), Expect = 6e-04
Identities = 17/28 (60%), Positives = 21/28 (74%)
Frame = +2
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAW 31
SE YTLVE +G + LGWK L++ASAW
Sbjct: 1892 SEHYTLVEKDGAMLLGWKSRNLISASAW 1975
>TC80896 similar to GP|20334379|gb|AAM19210.1 GAI-like protein 1 {Vitis
vinifera}, partial (17%)
Length = 783
Score = 36.2 bits (82), Expect = 0.003
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = +1
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 32
+F +EGY + E+ G L LGW L+ ASAW+
Sbjct: 367 LFSAEGYCVEENQGSLTLGWHSRPLIAASAWQ 462
>AJ499899 weakly similar to GP|20161620|dbj gibberellin response
modulator-like protein {Oryza sativa (japonica
cultivar-group)}, partial (14%)
Length = 368
Score = 35.4 bits (80), Expect = 0.005
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
+GYT+VE+ G L LGWK ++ S W+
Sbjct: 217 DGYTVVEEKGCLVLGWKSKPIVAVSCWK 134
>TC76809 similar to GP|20334379|gb|AAM19210.1 GAI-like protein 1 {Vitis
vinifera}, partial (72%)
Length = 2764
Score = 35.4 bits (80), Expect = 0.005
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +2
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWRPP 34
+GY + E+NG L LGW L+ SAW+ P
Sbjct: 2396 DGYRVEENNGCLMLGWHTRSLIATSAWKLP 2485
>TC79937 similar to GP|14517552|gb|AAK62666.1 F17J6.12/F17J6.12 {Arabidopsis
thaliana}, partial (28%)
Length = 886
Score = 34.7 bits (78), Expect = 0.008
Identities = 15/26 (57%), Positives = 19/26 (72%)
Frame = +3
Query: 7 YTLVEDNGILKLGWKDLCLLTASAWR 32
YTL E +G L LGW + L+T+SAWR
Sbjct: 552 YTLQEKDGALYLGWMNQPLITSSAWR 629
>TC77063 similar to GP|20334379|gb|AAM19210.1 GAI-like protein 1 {Vitis
vinifera}, partial (71%)
Length = 1762
Score = 32.3 bits (72), Expect = 0.040
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPH 43
+GY + E++G L LGW L+ SAW+ + ++ H
Sbjct: 1587 DGYKVEENDGCLMLGWHTRPLIATSAWKLAAANSVVVSH 1703
>TC77716 similar to GP|20465587|gb|AAM20276.1 unknown protein {Arabidopsis
thaliana}, partial (63%)
Length = 2392
Score = 32.0 bits (71), Expect = 0.053
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 7 YTLVEDNGILKLGWKDLCLLTASAWR 32
Y ++E+ G L GW+D L+ ASAW+
Sbjct: 1926 YKIIEEMGGLHFGWEDKNLIVASAWK 2003
>TC79190 similar to PIR|E96542|E96542 scarecrow-like protein [imported] -
Arabidopsis thaliana, partial (64%)
Length = 1669
Score = 30.8 bits (68), Expect = 0.12
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 7 YTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNII 41
YTL E +G L LGW + L+ + AWR + ++++
Sbjct: 1451 YTLEERDGALFLGWMNQDLIASCAWR*KINDSSVL 1555
>TC90401 similar to GP|9454566|gb|AAF87889.1| scarecrow-like 3 protein
{Arabidopsis thaliana}, partial (47%)
Length = 1253
Score = 27.3 bits (59), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = +1
Query: 11 EDNGILKLGWKDLCLLTASAWR 32
E+NG + + W+D L + SAWR
Sbjct: 931 EENGCVLICWQDRSLFSISAWR 996
>TC86258 similar to GP|16930433|gb|AAL31902.1 AT4g17230/dl4650c {Arabidopsis
thaliana}, partial (62%)
Length = 2237
Score = 26.9 bits (58), Expect = 1.7
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +3
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAW 31
+ Y L +G L LGW + T+SAW
Sbjct: 1893 QNYWLEHRDGALYLGWMKRAMATSSAW 1973
>AW691391 similar to GP|16604643|gb unknown protein {Arabidopsis thaliana},
partial (30%)
Length = 646
Score = 26.6 bits (57), Expect = 2.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 31 WRPPFHTNNIIPHH 44
W PP H ++I PHH
Sbjct: 187 WHPPHHPSSIQPHH 228
>BF648034 similar to GP|16604643|gb unknown protein {Arabidopsis thaliana},
partial (28%)
Length = 652
Score = 26.6 bits (57), Expect = 2.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 31 WRPPFHTNNIIPHH 44
W PP H ++I PHH
Sbjct: 208 WHPPHHPSSIQPHH 249
>TC85780 similar to SP|P49608|ACOC_CUCMA Aconitate hydratase cytoplasmic (EC
4.2.1.3) (Citrate hydro-lyase) (Aconitase)., partial
(97%)
Length = 3124
Score = 25.8 bits (55), Expect = 3.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 17 KLGWKDLCLLTASAWRPPFH 36
+L W + CLL A WR +H
Sbjct: 2060 RLPWSEECLLFAQLWRQYYH 2119
>TC77938 similar to GP|11994774|dbj|BAB03164. gene_id:MZE19.4~unknown protein
{Arabidopsis thaliana}, partial (88%)
Length = 1881
Score = 25.8 bits (55), Expect = 3.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 9 LVEDNGILKLGWKDLC 24
LV NG+ LGW+++C
Sbjct: 1473 LVTRNGLFSLGWREIC 1426
>TC92932 similar to PIR|D96656|D96656 hypothetical protein F16M19.21
[imported] - Arabidopsis thaliana, partial (12%)
Length = 583
Score = 25.8 bits (55), Expect = 3.8
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = +2
Query: 16 LKLGWKDLCLLTASAWRP 33
L LGW D L T S+W P
Sbjct: 449 LTLGWLDQTLYTVSSWTP 502
>AL388510
Length = 458
Score = 25.4 bits (54), Expect = 4.9
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 10 VEDNG-ILKLGWKDLCLLTASAWR 32
VE NG L LGWK + + SAWR
Sbjct: 357 VEKNGKCLILGWKGTPMYSISAWR 428
>BF647967 similar to GP|9757840|dbj gb|AAF24960.1~gene_id:MMG4.16~strong
similarity to unknown protein {Arabidopsis thaliana},
partial (21%)
Length = 535
Score = 25.4 bits (54), Expect = 4.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 23 LCLLTASAWRPPFHTNNIIPHH 44
LC L A+ PP +I PHH
Sbjct: 330 LCYLLLHAFFPPHTVTSIFPHH 265
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.141 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,433,432
Number of Sequences: 36976
Number of extensions: 28085
Number of successful extensions: 187
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of query: 45
length of database: 9,014,727
effective HSP length: 21
effective length of query: 24
effective length of database: 8,238,231
effective search space: 197717544
effective search space used: 197717544
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC124215.1