BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123899.6 + phase: 0 /pseudo
(513 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA heli... 889 0.0
TC78036 homologue to PIR|T06824|T06824 translation initiation fa... 215 3e-56
TC86018 similar to GP|19423939|gb|AAL87312.1 putative RNA helica... 198 5e-51
TC79326 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_9... 196 1e-50
TC77964 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_9... 192 3e-49
TC86021 homologue to GP|19423939|gb|AAL87312.1 putative RNA heli... 186 2e-47
TC76958 homologue to SP|P41382|IF4U_TOBAC Eukaryotic initiation ... 186 2e-47
TC76575 homologue to SP|Q40465|IF4V_TOBAC Eukaryotic initiation ... 165 3e-41
TC76342 similar to PIR|A86444|A86444 probable RNA helicase [impo... 149 3e-36
CB065370 similar to PIR|F83151|F83 probable ATP-dependent RNA he... 137 1e-32
TC88436 similar to GP|9293867|dbj|BAB01770.1 DEAD-Box RNA helica... 135 3e-32
TC87653 similar to PIR|D96799|D96799 hypothetical protein F22K20... 135 4e-32
TC89900 similar to GP|9759355|dbj|BAB10010.1 RNA helicase-like p... 132 3e-31
TC77771 homologue to GP|6137207|gb|AAF04377.1| P72 DEAD box prot... 129 3e-30
TC78248 similar to GP|16323192|gb|AAL15330.1 At2g47330/T8I13.17 ... 118 6e-27
TC89152 similar to PIR|H84854|H84854 probable ATP-dependent RNA ... 114 1e-25
TC79034 similar to GP|10177293|dbj|BAB10554. ATP-dependent RNA h... 113 2e-25
TC82878 similar to PIR|T45677|T45677 ATP-dependent RNA helicase-... 110 1e-24
TC76400 similar to SP|P41381|IF48_TOBAC Eukaryotic initiation fa... 106 2e-23
BG452245 similar to PIR|H86341|H8 hypothetical protein AAD30599.... 105 4e-23
>TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA helicase
{Arabidopsis thaliana}, partial (89%)
Length = 1982
Score = 889 bits (2296), Expect = 0.0
Identities = 460/518 (88%), Positives = 467/518 (89%), Gaps = 5/518 (0%)
Frame = +2
Query: 1 MNNNNRGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQRHMMQNQHQ 60
MNNNNRGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQRHMMQNQHQ
Sbjct: 77 MNNNNRGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQRHMMQNQHQ 256
Query: 61 QHYQNQQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARL 120
QHYQNQQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARL
Sbjct: 257 QHYQNQQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARL 436
Query: 121 KLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDI 180
KLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDI
Sbjct: 437 KLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDI 616
Query: 181 LARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVM 240
LARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVM
Sbjct: 617 LARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVM 796
Query: 241 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQ 300
VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQ
Sbjct: 797 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQ 976
Query: 301 PSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVE 360
PSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVE
Sbjct: 977 PSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVE 1156
Query: 361 ERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSC-----KDVARP 415
ERQKVHCLNTLFSK I+ + F S E ++ YSC K +
Sbjct: 1157ERQKVHCLNTLFSKL---QINQSIIFCNS--VNRVELLAKKITELGYSCFYIHAKMLQDH 1321
Query: 416 P**SFPRLPQWCMQESRLYCLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLG 475
F + LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLG
Sbjct: 1322RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLG 1501
Query: 476 LAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
LAVNL+TYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC
Sbjct: 1502LAVNLVTYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 1615
>TC78036 homologue to PIR|T06824|T06824 translation initiation factor -
garden pea, complete
Length = 1571
Score = 215 bits (548), Expect = 3e-56
Identities = 132/379 (34%), Positives = 210/379 (54%), Gaps = 5/379 (1%)
Frame = +3
Query: 131 TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGK 190
TE V A FE+ +K +LL GIY+ GFE+PS IQ+ ++ + G D++A+A++GTGK
Sbjct: 162 TEGVKAI--GSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGK 335
Query: 191 TAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKD 250
T+ ++ + +D +Q +I+ PTRELA QT +V +G + IQ GG S+ +
Sbjct: 336 TSMIALTVCQVVDTSVREVQALIVSPTRELASQTEKVILTIGDFINIQAHACIGGKSVGE 515
Query: 251 DIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFL 310
DI +L VH++ GTPGR+ D+ K+ + +LV+DE+D++LS F+ I + ++L
Sbjct: 516 DIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 695
Query: 311 PPTRQILMFSATFPVTVKDFKDRYLRKPY-IINLMDELTLKGITQFYAFVE-ERQKVHCL 368
PP Q+ + SAT P + + ++++ P I+ DELTL+GI QF+ VE E K L
Sbjct: 696 PPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTL 875
Query: 369 NTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDVARPP**SFPRLPQWCM 428
L+ I + F + R F S P + ++
Sbjct: 876 CDLYDTLT---ITQAVIFCNTKRKVDWLTEKMRNNNFTVSAMHGDMPQRERDAIMGEFRA 1046
Query: 429 QESRLYC---LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 485
+R+ ++ RG+D+Q V++VIN+D P N E Y+HR+GRSGRFG G+A+N + +D
Sbjct: 1047GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 1226
Query: 486 RFNLYRIEQELGTEIKQIP 504
L IEQ T+I ++P
Sbjct: 1227IKILRDIEQYYSTQIDEMP 1283
>TC86018 similar to GP|19423939|gb|AAL87312.1 putative RNA helicase
{Arabidopsis thaliana}, partial (12%)
Length = 885
Score = 198 bits (503), Expect = 5e-51
Identities = 105/144 (72%), Positives = 113/144 (77%), Gaps = 5/144 (3%)
Frame = +1
Query: 1 MNNNNRGRYPPGIGLGRGGSGGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQRHMMQNQ-- 58
MNNNNRGRYPPGIGLGRG GGG +N+N GFQQRPH+Q QQQYVQRH+MQNQ
Sbjct: 451 MNNNNRGRYPPGIGLGRGSGGGGLNSNPNNANAGFQQRPHYQ---QQQYVQRHLMQNQNQ 621
Query: 59 HQQHYQNQQQNQQQNQQQ---QQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQD 115
HQQHYQ+ QQNQQQ QQQ QQQQQWLRRNQLGGGTDTNVVEEVEKTVQSE +
Sbjct: 622 HQQHYQHHQQNQQQYQQQNQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSETMTLVHKI 801
Query: 116 WKARLKLPPADTRYRTEDVTATKG 139
+ + K ADTRYRTEDVTATKG
Sbjct: 802 GR-KTKASTADTRYRTEDVTATKG 870
>TC79326 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_90
{Arabidopsis thaliana}, partial (94%)
Length = 1883
Score = 196 bits (499), Expect = 1e-50
Identities = 132/384 (34%), Positives = 206/384 (53%), Gaps = 13/384 (3%)
Frame = +2
Query: 142 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEK 201
F D+ LK ELL I + GFE PS +Q E IP A+ G D+L +AK+G GKTA F + L++
Sbjct: 242 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQ 421
Query: 202 IDQDNNIIQVVILVPTRELALQTSQVCKELGKHL-QIQVMVTTGGTSLK--DDIMRLYQP 258
ID + +IL TRELA Q + +L ++V V GG ++K D+++ P
Sbjct: 422 IDPVPGQVSALILCHTRELAYQICHEFERFSTYLADLKVAVFYGGVNIKVHKDLLKNECP 601
Query: 259 VHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLL-SPEFQPSIEQLIQFLPPTRQIL 317
H++VGTPGRIL LA+ LK+ ++DE DK+L S + + ++ + + P +Q++
Sbjct: 602 -HIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVM 778
Query: 318 MFSATFPVTVKDFKDRYLRKPYIINLMDE--LTLKGITQFYAFVEERQKVHCLNTLFSKA 375
MFSAT ++ ++++ P + DE LTL G+ Q Y ++E +K LN L
Sbjct: 779 MFSATLSKEIRPVCKKFMQDPMENYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDAL 958
Query: 376 -ANKPIHHLLQFGKSS*T--PC*ENH*TRVFMFLYSCKDVARPP**SFPRLPQWCMQESR 432
N+ + + + S* N + F+ C R R + +R
Sbjct: 959 DFNQVVIFVKSVSRVS*AGQVALWNATFHPYAFILECPTKER-----LKRYKGFKEGHTR 1123
Query: 433 LYC---LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFN- 488
+ L RGIDI+ VN+VIN+D P +++TYLH+VGR+GRFG GLA+ ++ +
Sbjct: 1124ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHKVGRAGRFGTKGLAITFVSCSSDVDV 1303
Query: 489 LYRIEQELGTEIKQIPPFIDQAIY 512
L ++ +IKQ+P ID + Y
Sbjct: 1304LNNVQSRFEVDIKQLPEQIDTSTY 1375
>TC77964 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_90
{Arabidopsis thaliana}, partial (97%)
Length = 1454
Score = 192 bits (488), Expect = 3e-49
Identities = 145/440 (32%), Positives = 220/440 (49%), Gaps = 11/440 (2%)
Frame = +1
Query: 84 RRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARLKLPPADTRYRTEDVTATKGNEFE 143
R +G DT V EE E D +D KA P T + + F
Sbjct: 73 REENMGELKDTEVYEE-------ELIDYEEEDEKALDSTKPT-TESVKKGYVGIHSSGFR 228
Query: 144 DYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKID 203
D+ LK ELL I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F + L++ID
Sbjct: 229 DFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQID 408
Query: 204 QDNNIIQVVILVPTRELALQTSQVCKELGKHL-QIQVMVTTGGTSLK--DDIMRLYQPVH 260
+ ++L TRELA Q + +L I+V V GG ++K D+++ P H
Sbjct: 409 PVPGQVAALVLCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECP-H 585
Query: 261 LLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLL-SPEFQPSIEQLIQFLPPTRQILMF 319
++VGTPGRIL L + LK+ ++DE DK+L S + + ++++ + P +Q++MF
Sbjct: 586 IVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRKDVQEIFKLTPHDKQVMMF 765
Query: 320 SATFPVTVKDFKDRYLRKPYIINLMDE--LTLKGITQFYAFVEERQKVHCLNTLFSKAAN 377
SAT ++ ++++ P I + DE LTL G+ Q Y ++E +K LN L
Sbjct: 766 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDAL-- 939
Query: 378 KPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDVARPP**SFPRLPQWCMQESRLYC-- 435
+ ++ F KS N F C R + + R+
Sbjct: 940 -DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVAT 1116
Query: 436 -LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIE 493
L RGIDI+ VN+VIN+D P +++TYLHRVGR+GRFG GLA+ ++ D L +++
Sbjct: 1117DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQ 1296
Query: 494 QEL-GTEIKQIPPFIDQAIY 512
G K++P ID Y
Sbjct: 1297SRF*GLI*KELPEQIDTFTY 1356
>TC86021 homologue to GP|19423939|gb|AAL87312.1 putative RNA helicase
{Arabidopsis thaliana}, partial (26%)
Length = 1023
Score = 186 bits (472), Expect = 2e-47
Identities = 96/113 (84%), Positives = 99/113 (86%), Gaps = 2/113 (1%)
Frame = +1
Query: 403 FMFLYSCKDVARPP**SFPRLPQWCMQESRLYC--LFTRGIDIQAVNVVINFDFPKNSET 460
FMFLY+CKDVARPP**SF + L C LFTRGIDIQAVNVVINFDFPKNSET
Sbjct: 91 FMFLYTCKDVARPP**SFSTTSAMVPCRN-LVCTDLFTRGIDIQAVNVVINFDFPKNSET 267
Query: 461 YLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYC 513
YLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQA+YC
Sbjct: 268 YLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAVYC 426
Score = 52.0 bits (123), Expect = 5e-07
Identities = 31/57 (54%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 379 PIHHLLQFGKSS*TPC*ENH*TRVF-MFLYSCKDVARPP**SFPRLPQWCMQESRLY 434
P HHLLQFG+SS*TPC*ENH TRVF + +Y + F MQESRLY
Sbjct: 18 PFHHLLQFGESS*TPC*ENHRTRVFHVSIYMQRCCKTTVIEFFHDFRNGAMQESRLY 188
>TC76958 homologue to SP|P41382|IF4U_TOBAC Eukaryotic initiation factor
4A-10 (eIF-4A-10) (eIF4A-10). [Common tobacco]
{Nicotiana tabacum}, complete
Length = 1761
Score = 186 bits (472), Expect = 2e-47
Identities = 126/395 (31%), Positives = 194/395 (48%), Gaps = 30/395 (7%)
Frame = +3
Query: 140 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPAL 199
+ F+ L+ LL GIY GFE+PS IQ+ I + G D++ +A++GTGKTA F L
Sbjct: 285 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGIL 464
Query: 200 EKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPV 259
+++D Q ++L PTRELA Q +V + LG +L ++V GGTS+++D L V
Sbjct: 465 QQLDYSVTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGV 644
Query: 260 HLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMF 319
H++VGTPGR+ D+ ++ M V+DEAD++LS F+ I + Q LP Q+ +F
Sbjct: 645 HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVF 824
Query: 320 SATFPVTVKDFKDRYLR-----------------KPYIIN----------LMDELTLKGI 352
SAT P + +++ K + +N L D I
Sbjct: 825 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAI 1004
Query: 353 TQFYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFLYSCKDV 412
TQ FV R+KV + L K ++ G + +D+
Sbjct: 1005TQSVIFVNTRRKV---DWLTDKMRSRDHTVSATHGDMD----------------QNTRDI 1127
Query: 413 ARPP**SFPRLPQWCMQESRLYC---LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSG 469
+ ++ SR+ L RGID+Q V++VIN+D P E YLHR+GRSG
Sbjct: 1128I---------MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 1280
Query: 470 RFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 504
RFG G+A+N +T +D L I++ I+++P
Sbjct: 1281RFGRKGVAINFVTTDDERMLSDIQKFYNVLIEELP 1385
>TC76575 homologue to SP|Q40465|IF4V_TOBAC Eukaryotic initiation factor
4A-11 (eIF-4A-11) (eIF4A-11). [Common tobacco]
{Nicotiana tabacum}, complete
Length = 1627
Score = 165 bits (418), Expect = 3e-41
Identities = 97/238 (40%), Positives = 142/238 (58%), Gaps = 3/238 (1%)
Frame = +1
Query: 142 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEK 201
F+ L LL GIY GFE+PS IQ+ I + G D++ +A++GTGKTA F L++
Sbjct: 259 FDAMGLLENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQ 438
Query: 202 IDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHL 261
+D Q ++L PTRELA Q +V + LG +L ++V GGTS+++D L VH+
Sbjct: 439 LDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQTGVHV 618
Query: 262 LVGTPGRILDLAKKGVCVLKDC-SMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFS 320
+VGTPGR+ D+ ++ + DC M V+DEAD++LS F+ I + Q LPP Q+ +FS
Sbjct: 619 VVGTPGRVFDMLRR-QSLRSDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 795
Query: 321 ATFPVTVKDFKDRYLRKPY-IINLMDELTLKGITQFYAFVE-ERQKVHCLNTLFSKAA 376
AT P + +++ KP I+ DELTL+GI QFY V+ E K+ L L+ A
Sbjct: 796 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 969
Score = 74.3 bits (181), Expect = 1e-13
Identities = 33/69 (47%), Positives = 47/69 (67%)
Frame = +1
Query: 436 LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE 495
L RGID+Q V++VIN+D P E YLHR+GRSGRFG G+A+N +T ED L I++
Sbjct: 1147 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLEDARMLADIQKF 1326
Query: 496 LGTEIKQIP 504
++++P
Sbjct: 1327 YNVIVEELP 1353
>TC76342 similar to PIR|A86444|A86444 probable RNA helicase [imported] -
Arabidopsis thaliana, partial (80%)
Length = 1651
Score = 149 bits (375), Expect = 3e-36
Identities = 127/456 (27%), Positives = 201/456 (43%), Gaps = 28/456 (6%)
Frame = +3
Query: 56 QNQHQQHYQNQQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQD 115
++Q + + QN +++++++++++ + N GG V A+D
Sbjct: 186 KHQDETNLQNDTESEKKSKKKKKHNKSEENNDAGG-------------VSVSASDE---- 314
Query: 116 WKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIAL 175
P T D T FED L +L KGFE+PSPIQ + P L
Sbjct: 315 -------PIVVTGKNAGDEKYTPVKRFEDSGLPENVLECC--KGFEKPSPIQSRAWPFLL 467
Query: 176 TGSDILARAKNGTGKTAAFSIPALEKI---------DQDNNIIQVVILVPTRELALQTSQ 226
G D++ A G+GKT AF IPA+ + + N + ++L PTRELA Q S
Sbjct: 468 DGRDLIGIAATGSGKTLAFGIPAIMHVMNKRKSKGSSKGRNPL-CLMLSPTRELAQQISD 644
Query: 227 VCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSML 286
V + GK ++ + GGT I L + +++GTPGRI DL + G+C L++ S +
Sbjct: 645 VLCDAGKSCGVESVCLYGGTPKGAQISALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFV 824
Query: 287 VMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRK---PYIINL 343
V+DEAD++L F+ + ++ RQ++MFSAT+P+ V ++ ++
Sbjct: 825 VLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGS 1004
Query: 344 MDELTLKGITQFYAFVEERQKVHCLNTLFSKAANKPIHHLLQFGKSS*TPC*ENH*TRVF 403
D + Q ++ER + L L K + +L F TRV
Sbjct: 1005EDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWET------TRVE 1166
Query: 404 MFLY--SCKDVARPP**SFPRLPQWCMQESRLYCLFTRG--------------IDIQAVN 447
L K V+ + + ++ LF G +DI V
Sbjct: 1167KMLQQGGWKAVSISG-------DKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVE 1325
Query: 448 VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITY 483
VVINF FP E Y+HR+GR+GR G G+A T+
Sbjct: 1326VVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTH 1433
>CB065370 similar to PIR|F83151|F83 probable ATP-dependent RNA helicase
PA3950 [imported] - Pseudomonas aeruginosa (strain
PAO1), partial (42%)
Length = 634
Score = 137 bits (344), Expect = 1e-32
Identities = 71/178 (39%), Positives = 108/178 (59%), Gaps = 5/178 (2%)
Frame = -3
Query: 151 LLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQD----- 205
LL + + G+ P+P+Q ++IP L G D++A A+ GTGKTA F++P L+++ +
Sbjct: 539 LLQTLQQLGYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEKVA 360
Query: 206 NNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGT 265
+N I+ ++LVPTRELA Q +E ++L + GG S+ +MRL + V LLV T
Sbjct: 359 SNSIRALVLVPTRELAEQVHANVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVAT 180
Query: 266 PGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATF 323
PGR+LDL ++ MLV+DEAD++L F ++ + LP RQ L+FSATF
Sbjct: 179 PGRLLDLFRQNAIKFNQVQMLVLDEADRMLDLGFAEELQAVYAALPRKRQTLLFSATF 6
>TC88436 similar to GP|9293867|dbj|BAB01770.1 DEAD-Box RNA helicase-like
protein {Arabidopsis thaliana}, partial (38%)
Length = 1024
Score = 135 bits (341), Expect = 3e-32
Identities = 76/215 (35%), Positives = 119/215 (55%), Gaps = 6/215 (2%)
Frame = +1
Query: 138 KGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIP 197
+G E + ++++ + +KG + PIQ + A+ G D++ RA+ GTGKT AF IP
Sbjct: 298 EGLEIAKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIP 477
Query: 198 ALEKIDQDN------NIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDD 251
++KI Q N ++L PTRELA Q + E +L + GGT +
Sbjct: 478 IMDKIIQFNAKHGRGKDPLALVLAPTRELAKQVEKEFYEAAPNLD--TICVYGGTPISQQ 651
Query: 252 IMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLP 311
+ +L V + VGTPGRI+DL +G LK+ +++DEAD++L FQ +E++++ LP
Sbjct: 652 MRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLP 831
Query: 312 PTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDE 346
R LMFSAT P +K YL+ P I+L+ +
Sbjct: 832 AERXTLMFSATMPTWIKQLTRNYLKNPLTIDLVXD 936
>TC87653 similar to PIR|D96799|D96799 hypothetical protein F22K20.13
[imported] - Arabidopsis thaliana, partial (38%)
Length = 1068
Score = 135 bits (340), Expect = 4e-32
Identities = 75/205 (36%), Positives = 120/205 (57%), Gaps = 3/205 (1%)
Frame = +2
Query: 142 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEK 201
FE L R++ GI KG++ P+PIQ +++P+ L+G D++A A+ G+GKTAAF +P L +
Sbjct: 92 FETLGLNRDVFSGIKRKGYKVPTPIQRKTMPLILSGIDVVAMARTGSGKTAAFLVPMLHR 271
Query: 202 IDQ--DNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPV 259
++Q ++ +IL PTR+LA QT + KELG ++V + GG S++ L Q
Sbjct: 272 LNQHVPQGGVRGLILSPTRDLAQQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNP 451
Query: 260 HLLVGTPGRIL-DLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILM 318
+++ TPGR++ L++ L+ +V DEAD L F + Q++ L RQ L+
Sbjct: 452 DIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLL 631
Query: 319 FSATFPVTVKDFKDRYLRKPYIINL 343
FSAT P + +F LR P ++ L
Sbjct: 632 FSATLPSALAEFAKAGLRDPRLVRL 706
>TC89900 similar to GP|9759355|dbj|BAB10010.1 RNA helicase-like protein
{Arabidopsis thaliana}, partial (49%)
Length = 1515
Score = 132 bits (332), Expect = 3e-31
Identities = 111/370 (30%), Positives = 178/370 (48%), Gaps = 32/370 (8%)
Frame = +1
Query: 152 LMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKI--------D 203
L G+ + G+E+ + +QE ++P+ L G D+LA+AK GTGKT AF +P++E +
Sbjct: 334 LKGVKDAGYEKMTIVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPNNRG 513
Query: 204 QDNNIIQVVILVPTRELALQ-TSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQ-PVHL 261
Q+ I V+++ PTRELA Q ++ K L H I V GGTSL + R+ + P +
Sbjct: 514 QNQTPILVLVVCPTRELACQAAAEATKLLKYHPTIGAQVVIGGTSLSSEQKRIQKNPCQI 693
Query: 262 LVGTPGRILD-LAKKG--VCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILM 318
L+ TPGR+ D +A L LV+DEAD+LL F+ IE++I +P RQ LM
Sbjct: 694 LIATPGRLKDHIANTAGFASKLMGVKALVLDEADQLLDMGFRKDIEKIIASVPKQRQTLM 873
Query: 319 FSATFPVTVKDFKDRYLRKPY-IINLMDELTLKGITQFYAFVEERQKVHCLNTLFS---- 373
FSAT P V + L+K + IN + G + ++ V + L+ FS
Sbjct: 874 FSATIPDAVHQVCNVALKKDFEFINTVQ----XGTXETHSQVRXMHLIAPLDKHFSLLSV 1041
Query: 374 ----KAANKPIHHLLQFGKSS*TPC*ENH*TRVFMFL-----YSCKDVARPP**SFPRLP 424
A++ + +L F C T + L + +++ F
Sbjct: 1042ILKEHIADEVDYKVLVF-------CTTAMVTSLVASLLGKLDLNVREIYSRKKQGFRNRV 1200
Query: 425 QWCMQESRLYCLFTRGIDIQAV-----NVVINFDFPKNSETYLHRVGRSGRFGHLGLAVN 479
++S+ L T + + V ++V+ P + E Y+HR+GR+GR G G +
Sbjct: 1201SDEFRKSKRLILVTSDVSARGVDYPDVSLVVQLGIPADKELYIHRLGRTGRIGKEGKGIL 1380
Query: 480 LITYEDRFNL 489
L+ + F L
Sbjct: 1381LLAPWEEFFL 1410
>TC77771 homologue to GP|6137207|gb|AAF04377.1| P72 DEAD box protein {Pisum
sativum}, partial (69%)
Length = 1736
Score = 129 bits (324), Expect = 3e-30
Identities = 97/316 (30%), Positives = 146/316 (45%), Gaps = 16/316 (5%)
Frame = +1
Query: 72 QNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARLKLPPA---DTR 128
+N Q + + N + GT A + SS + L+ PA D
Sbjct: 439 RNHQSSKGDSFSSHNNVANGTPA-------------AGNGSSIKSQVPLETGPALSPDAY 579
Query: 129 YRTEDVTATKGN------EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILA 182
R ++T T N F E+L + GF P+PIQ +S PIAL DI+A
Sbjct: 580 RRRHEITVTGDNVPPPVTSFASSGFPSEILREVQNAGFSAPTPIQAQS*PIALQSKDIVA 759
Query: 183 RAKNGTGKTAAFSIPALEKIDQDNNIIQ----VVILVPTRELALQTSQVCKELGKHLQIQ 238
AK G+GKT + +PA + + NN + V++L PTRELA Q + K +I
Sbjct: 760 IAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTVLVLSPTRELATQIQDEAVKFSKTSRIA 939
Query: 239 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPE 298
GG + + + ++V TPGR+ D+ + L S LV+DEAD++L
Sbjct: 940 CTCLYGGAPKGPQLKDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMG 1119
Query: 299 FQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINL--MDELTL-KGITQF 355
F+P I +++ +P RQ LMF+AT+P V+ L P +N+ +DEL K ITQ
Sbjct: 1120FEPQIRKIVNGVPARRQTLMFTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQH 1299
Query: 356 YAFVEERQKVHCLNTL 371
+ +K L T+
Sbjct: 1300IEVLTYVEKQRRLETI 1347
Score = 54.3 bits (129), Expect = 1e-07
Identities = 22/47 (46%), Positives = 32/47 (67%)
Frame = +1
Query: 439 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 485
RG+D++ + VV+NFDFP E Y+HR+GR+GR G G+A +D
Sbjct: 1549 RGLDVKDIRVVVNFDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQD 1689
>TC78248 similar to GP|16323192|gb|AAL15330.1 At2g47330/T8I13.17 {Arabidopsis
thaliana}, partial (79%)
Length = 2745
Score = 118 bits (295), Expect = 6e-27
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 5/194 (2%)
Frame = +2
Query: 150 ELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNII 209
+++ I ++G+E+P+ IQ +++P+ L+G DI+ AK G+GKTAAF +P + I +
Sbjct: 926 QIMGAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ 1105
Query: 210 QV-----VILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVG 264
+ VI PTRELA Q K+ K I+V GG S + L ++V
Sbjct: 1106 KEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVA 1285
Query: 265 TPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFP 324
TPGR++D+ K + + LV+DEAD++ F+P + ++ + P RQ L+FSAT P
Sbjct: 1286 TPGRLIDMLKMKALAMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMP 1465
Query: 325 VTVKDFKDRYLRKP 338
V+ L P
Sbjct: 1466 RKVEKLAREILSDP 1507
Score = 48.9 bits (115), Expect = 5e-06
Identities = 28/73 (38%), Positives = 44/73 (59%), Gaps = 8/73 (10%)
Frame = +3
Query: 439 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHL-GLAVNLITY-EDRF------NLY 490
RG+DI+++ V+NFD K+ + ++HR+GR+GR G G+A LIT E RF +L
Sbjct: 1818 RGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLV 1997
Query: 491 RIEQELGTEIKQI 503
Q + TE+ +
Sbjct: 1998 AAGQNVSTELMDL 2036
>TC89152 similar to PIR|H84854|H84854 probable ATP-dependent RNA helicase
[imported] - Arabidopsis thaliana, partial (72%)
Length = 1787
Score = 114 bits (284), Expect = 1e-25
Identities = 65/188 (34%), Positives = 106/188 (55%), Gaps = 14/188 (7%)
Frame = +3
Query: 162 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPAL-----EKIDQDNNIIQV----- 211
+P+P+Q +IPI+L G D++A A+ G+GKTAAF P + E+ Q + +
Sbjct: 237 KPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILTEQYAQRPRVARTAYPLA 416
Query: 212 VILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 271
+IL PTREL+ Q K+ ++V+V GG + + L + V +LV TPGR++D
Sbjct: 417 LILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVD 596
Query: 272 LAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFL----PPTRQILMFSATFPVTV 327
L ++ L+ L +DEAD++L F+P I ++++ + P RQ L+FSATFP +
Sbjct: 597 LLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEI 776
Query: 328 KDFKDRYL 335
+ +L
Sbjct: 777 QRLASDFL 800
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 439 RGIDIQAVNVVINFDFPKNSETYLH 463
RG+DI V V+NFD P + + Y+H
Sbjct: 1134 RGLDIPRVAHVVNFDLPNDIDDYVH 1208
>TC79034 similar to GP|10177293|dbj|BAB10554. ATP-dependent RNA
helicase-like protein {Arabidopsis thaliana}, partial
(65%)
Length = 1443
Score = 113 bits (283), Expect = 2e-25
Identities = 59/173 (34%), Positives = 98/173 (56%), Gaps = 5/173 (2%)
Frame = +3
Query: 172 PIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQ-----VVILVPTRELALQTSQ 226
P+ALTG D++ A+ G+GKT ++ +PA+ + ++Q V++L PTRELA+Q Q
Sbjct: 6 PMALTGRDLIGIAETGSGKTLSYLLPAIVHVSAQPRLVQGEGPVVLVLAPTRELAVQIQQ 185
Query: 227 VCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSML 286
+ G I+ GG I L V +++ TPGR++D+ + L+ + L
Sbjct: 186 EAMKFGSRSNIRCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEAQHTNLQRVTYL 365
Query: 287 VMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPY 339
V+DEAD++L F+P I +++ + P RQ L +SAT+P V+ ++L PY
Sbjct: 366 VLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVESLARQFLHNPY 524
Score = 51.6 bits (122), Expect = 7e-07
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +1
Query: 439 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 482
RG+D++ + V+N+DFP + E Y+HR+GR+GR G G A + T
Sbjct: 832 RGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFT 963
>TC82878 similar to PIR|T45677|T45677 ATP-dependent RNA helicase-like
protein - Arabidopsis thaliana, partial (33%)
Length = 1185
Score = 110 bits (276), Expect = 1e-24
Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 20/209 (9%)
Frame = +2
Query: 140 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPAL 199
N F + L +L I + +P+P+Q +IPIA+ G D++A A+ G+GKTAAF P +
Sbjct: 545 NLFAETELHEDLKNNIERCKYVKPTPVQRYAIPIAVAGRDLMACAQTGSGKTAAFCFPII 724
Query: 200 EKI----------------DQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTT 243
I D D +IL PTREL+ Q + +++ V
Sbjct: 725 SGIMKERLASGLLPRGGGVDSDVAFPTALILSPTRELSCQIHAEACKFAHQTGVKIAVVY 904
Query: 244 GGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSI 303
GG + + L + V +LV TPGR++DL ++ LK L +DEAD++L F+ I
Sbjct: 905 GGAPIGQQLRILERGVDILVATPGRLVDLIERERVSLKKIKYLALDEADRMLDMGFEHQI 1084
Query: 304 EQLIQFL----PPTRQILMFSATFPVTVK 328
++Q + P RQ L+FSATFP ++
Sbjct: 1085RNIVQQMHMPPPGDRQTLLFSATFPDNIQ 1171
>TC76400 similar to SP|P41381|IF48_TOBAC Eukaryotic initiation factor 4A-8
(eIF-4A-8) (eIF4A-8). [Common tobacco] {Nicotiana
tabacum}, partial (41%)
Length = 641
Score = 106 bits (264), Expect = 2e-23
Identities = 55/133 (41%), Positives = 82/133 (61%)
Frame = +1
Query: 140 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPAL 199
+ F+ L LL GIY GFE+PS IQ+ I G D++ +A++GTGKTA F L
Sbjct: 238 DSFDAMGLAENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 417
Query: 200 EKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPV 259
+++D + Q ++L PTRELA Q +V + LG +L ++V GGTS+++D L V
Sbjct: 418 QQLDYNVTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSTGV 597
Query: 260 HLLVGTPGRILDL 272
H++VGTP R+ D+
Sbjct: 598 HVVVGTPCRVFDM 636
>BG452245 similar to PIR|H86341|H8 hypothetical protein AAD30599.1 [imported]
- Arabidopsis thaliana, partial (18%)
Length = 653
Score = 105 bits (262), Expect = 4e-23
Identities = 60/190 (31%), Positives = 104/190 (54%), Gaps = 8/190 (4%)
Frame = +1
Query: 147 LKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQDN 206
L ++L I + FE+P PIQ +++P+ ++G D + AK G+GKT AF +P L I
Sbjct: 40 LTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 219
Query: 207 NIIQ-----VVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHL 261
++ +I+ PTREL Q ++ K + I+ + GG+ + I L + +
Sbjct: 220 PVVVGDGPIGLIMAPTRELVQQIHSDIRKFTKVMGIRCVPVYGGSGVAQQISELKRGTEI 399
Query: 262 LVGTPGRILDL---AKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILM 318
+V TPGR++D+ + + L+ + LVMDEA ++ F+P I +++ + P RQ ++
Sbjct: 400 VVCTPGRMIDILCTSSGKITNLRRVTYLVMDEAXRMFDMGFEPQITRIVXNIRPXRQTVL 579
Query: 319 FSATFPVTVK 328
F AT P V+
Sbjct: 580 FXATXPRQVE 609
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.325 0.140 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,509,835
Number of Sequences: 36976
Number of extensions: 201993
Number of successful extensions: 6658
Number of sequences better than 10.0: 284
Number of HSP's better than 10.0 without gapping: 3185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4826
length of query: 513
length of database: 9,014,727
effective HSP length: 100
effective length of query: 413
effective length of database: 5,317,127
effective search space: 2195973451
effective search space used: 2195973451
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC123899.6