TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123593.2 + phase: 0 /pseudo
         (199 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ...    60  4e-10
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp...    32  9e-05
CB891696                                                               35  0.025
BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li...    33  0.095
TC79171 similar to GP|19310435|gb|AAL84954.1 F17H15.1/F17H15.1 {...    28  1.8
TC81122 similar to GP|20258999|gb|AAM14215.1 unknown protein {Ar...    27  5.2
BG647708 weakly similar to GP|13786450|gb| putative reverse tran...    26  8.9

>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
           partial (1%)
          Length = 441

 Score = 60.5 bits (145), Expect = 4e-10
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = +3

Query: 123 YADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
           YADDTLCIG  TV+NL+TLKA+L+ FEMAS LKVNF K
Sbjct: 174 YADDTLCIGMPTVDNLWTLKALLQGFEMASGLKVNFHK 287


>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
           Arabidopsis thaliana, partial (6%)
          Length = 951

 Score = 31.6 bits (70), Expect(2) = 9e-05
 Identities = 32/106 (30%), Positives = 41/106 (38%)
 Frame = +2

Query: 55  WIKDRVFGGNVSILVNGSPTEEISKQGDHLTPFLCSRRF**VDVQCGESK*V*GF*GC*R 114
           WIK+ V     S+LVNGSPT  + K     T       F  V+                 
Sbjct: 407 WIKECVSTATTSVLVNGSPTNVLMKSLVQ-TQLFTRYSFGVVNPVVVSH----------- 550

Query: 115 RDGDFTSSYADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
                   +A+DTL +      N+  L+A L  F   S LKVNF K
Sbjct: 551 ------LQFANDTLLLETKNWANIRALRAALVIF*AMSGLKVNFHK 670



 Score = 30.4 bits (67), Expect(2) = 9e-05
 Identities = 20/33 (60%), Positives = 21/33 (63%)
 Frame = +3

Query: 18  *GSGFG*EEET*TFDF*SGF*KGL*FGRLGLCG 50
           *G G G*E E  +F  * GF*KGL   RLGL G
Sbjct: 264 *GCG*G*ETEERSFVV*GGF*KGLSLCRLGLFG 362


>CB891696 
          Length = 638

 Score = 34.7 bits (78), Expect = 0.025
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +1

Query: 135 VENLYTLKAMLREFEMASSLKVNFLK 160
           VEN+ T+K ++  FE+ASSL VNFLK
Sbjct: 4   VENILTMKTIVSYFELASSLWVNFLK 81


>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
           {Arabidopsis thaliana}, partial (18%)
          Length = 789

 Score = 32.7 bits (73), Expect = 0.095
 Identities = 18/49 (36%), Positives = 26/49 (52%), Gaps = 5/49 (10%)
 Frame = -3

Query: 45  RLGLCGKRVGWIKDRVFGGNVSILVNGSPTEEI-----SKQGDHLTPFL 88
           RLG  G  + WI + V   + S L+NG P   +      +QGD L+P+L
Sbjct: 496 RLGFHGIWISWIMECVSTVSYSFLINGGPQGRVLPSRGLRQGDPLSPYL 350


>TC79171 similar to GP|19310435|gb|AAL84954.1 F17H15.1/F17H15.1 {Arabidopsis
           thaliana}, partial (27%)
          Length = 1421

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 11/29 (37%), Positives = 19/29 (64%)
 Frame = -2

Query: 44  GRLGLCGKRVGWIKDRVFGGNVSILVNGS 72
           GRLG  G R+ W++  +  G++++L N S
Sbjct: 859 GRLGRRGYRITWLRSSLLVGSIALLGNSS 773


>TC81122 similar to GP|20258999|gb|AAM14215.1 unknown protein {Arabidopsis
           thaliana}, partial (61%)
          Length = 675

 Score = 26.9 bits (58), Expect = 5.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 177 VISFIIVKGQSHLLIWIFQLVQI 199
           ++SF+++   S+L IWIF L+ I
Sbjct: 466 IVSFVLLNKLSNLFIWIFLLIII 398


>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
           {Oryza sativa}, partial (9%)
          Length = 708

 Score = 26.2 bits (56), Expect = 8.9
 Identities = 12/38 (31%), Positives = 19/38 (49%)
 Frame = +1

Query: 123 YADDTLCIGETTVENLYTLKAMLREFEMASSLKVNFLK 160
           +ADD+L      +    T+  +L  ++ AS   VNF K
Sbjct: 160 FADDSLLFARANLTEAATIMQVLHSYQSASGQLVNFEK 273


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.363    0.169    0.619 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,580,070
Number of Sequences: 36976
Number of extensions: 67941
Number of successful extensions: 638
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of query: 199
length of database: 9,014,727
effective HSP length: 91
effective length of query: 108
effective length of database: 5,649,911
effective search space: 610190388
effective search space used: 610190388
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 56 (26.2 bits)