TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123575.7 - phase: 0 /pseudo
         (378 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF635063 weakly similar to PIR|F84486|F84 probable retroelement ...   162  2e-49
BG646342 weakly similar to PIR|F84486|F84 probable retroelement ...    81  8e-16
BG587684 similar to GP|12858190|dbj evidence:NAS~putative~unclas...    29  2.6
BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x pa...    28  4.4

>BF635063 weakly similar to PIR|F84486|F84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (4%)
          Length = 677

 Score =  162 bits (410), Expect(2) = 2e-49
 Identities = 83/115 (72%), Positives = 92/115 (79%)
 Frame = -2

Query: 2   MDSKWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAIS 61
           M SK +IEKFTG NDFGLWKVKM  +LIQQKC +ALKG+  +P  ++ AEKTEM DKA S
Sbjct: 568 MGSKRDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEVSLPVTMSRAEKTEMVDKARS 389

Query: 62  AIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESK 116
           AIVLCLGDKVLREVA+E    SMW KL SLYMTKS  HRQ LKQQLY +RMVESK
Sbjct: 388 AIVLCLGDKVLREVAKERTAASMWAKL*SLYMTKSLAHRQFLKQQLYSFRMVESK 224



 Score = 51.2 bits (121), Expect(2) = 2e-49
 Identities = 33/74 (44%), Positives = 42/74 (56%)
 Frame = -1

Query: 116 KTNNEATDGIQ*DY**FGEHRCKYGRRG*SLTPVVCFT*VL*EFQEYKEFWQRGHYHFGG 175
           K ++ AT G+Q + ** GE+       G S T VVC T + *  Q Y   WQR H + G 
Sbjct: 227 KGHHGATYGVQQNP**LGEY*GAT*G*GKSYTLVVCSTEIF*IVQRYHALWQRRHCYLGR 48

Query: 176 RSSNFENQRVNQIQ 189
            SS FENQ V+Q+Q
Sbjct: 47  SSSGFENQGVDQVQ 6


>BG646342 weakly similar to PIR|F84486|F84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (4%)
          Length = 599

 Score = 80.9 bits (198), Expect = 8e-16
 Identities = 43/62 (69%), Positives = 47/62 (75%)
 Frame = +2

Query: 59  AISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKTN 118
           A SAIVLCLGDKVLREVA+E    SM  KL+ LYMTKS  HRQ LKQQLY ++MVESK  
Sbjct: 2   ARSAIVLCLGDKVLREVAKEPTATSMCAKLEYLYMTKSLAHRQFLKQQLYSFKMVESKAI 181

Query: 119 NE 120
            E
Sbjct: 182 TE 187


>BG587684 similar to GP|12858190|dbj evidence:NAS~putative~unclassifiable
           {Mus musculus}, partial (14%)
          Length = 819

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/16 (68%), Positives = 13/16 (80%)
 Frame = +3

Query: 2   MDSKWNIEKFTGSNDF 17
           MD+KW+IE F G NDF
Sbjct: 735 MDTKWDIEIFIGENDF 782


>BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x paradisi},
           partial (3%)
          Length = 658

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 84  MWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKT 117
           +W+KL++ YM +  T ++ L      Y+MV++K+
Sbjct: 275 LWDKLETRYMREDATSKKFLVSHFNNYKMVDNKS 376


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.356    0.157    0.537 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,773,358
Number of Sequences: 36976
Number of extensions: 133579
Number of successful extensions: 1235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 983
length of query: 378
length of database: 9,014,727
effective HSP length: 98
effective length of query: 280
effective length of database: 5,391,079
effective search space: 1509502120
effective search space used: 1509502120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 59 (27.3 bits)