BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122729.1 - phase: 0 /pseudo
(119 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF635063 weakly similar to PIR|F84486|F84 probable retroelement ... 78 4e-16
BG646342 weakly similar to PIR|F84486|F84 probable retroelement ... 44 1e-05
BF639450 similar to GP|21553596|gb| zinc finger protein {Arabido... 27 1.1
AW584129 weakly similar to GP|13235641|em S-adenosyl-L-methionin... 26 1.9
BF521385 similar to PIR|T39436|T394 very hypothetical protein SP... 25 3.3
TC88970 similar to GP|16648969|gb|AAL24336.1 serine carboxypepti... 25 4.3
BF639328 similar to GP|8778394|gb|A F16A14.18 {Arabidopsis thali... 24 7.3
TC89561 similar to GP|9759196|dbj|BAB09733.1 GTPase activator pr... 24 7.3
TC82547 weakly similar to GP|8778394|gb|AAF79402.1| F16A14.18 {A... 24 7.3
BQ135935 similar to PIR|C96779|C967 unknown protein F9E10.20 [im... 24 9.6
BI308772 similar to GP|22353121|g cytokinin receptor {Catharanth... 24 9.6
BF649332 24 9.6
TC78991 similar to GP|9759268|dbj|BAB09589.1 101 kDa heat shock ... 24 9.6
TC76464 similar to GP|14532540|gb|AAK63998.1 At1g19180/T29M8_5 {... 24 9.6
TC83993 similar to PIR|T04913|T04913 hypothetical protein T10I14... 24 9.6
TC76474 similar to GP|14532540|gb|AAK63998.1 At1g19180/T29M8_5 {... 24 9.6
>BF635063 weakly similar to PIR|F84486|F84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(4%)
Length = 677
Score = 78.2 bits (191), Expect = 4e-16
Identities = 51/114 (44%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Frame = -2
Query: 1 MSQEKMIEMADKATSLIVLCLVDKVSIDVKKETTMHGGHVGKVGVIVYDQVFDS*TIPKT 60
MS+ + EM DKA S IVLCL DKV +V KE T + + + + +
Sbjct: 433 MSRAEKTEMVDKARSAIVLCLGDKVLREVAKERTAASMWAKL*SLYMTKSLAHRQFLKQQ 254
Query: 61 --KFLLIKYEVK*SHHEEFNKILDNLENIEVHLEDEDKVILLLC-IPKSFESFR 111
F +++ + EFNKILD+LENIEV LEDE+K ILLLC +PKSFESF+
Sbjct: 253 LYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEEKAILLLCALPKSFESFK 92
>BG646342 weakly similar to PIR|F84486|F84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(4%)
Length = 599
Score = 43.5 bits (101), Expect = 1e-05
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Frame = +2
Query: 13 ATSLIVLCLVDKVSIDVKKETTMHGGHVGKVGVIVYDQVFDS*TIPKTKFLLIKYEVK*S 72
A S IVLCL DKV +V KE T K+ + + K + K +
Sbjct: 2 ARSAIVLCLGDKVLREVAKEPTATS-MCAKLEYLYMTKSLAHRQFLKQQLYSFKMVESKA 178
Query: 73 HHE---EFNKILDNLENIEVHLEDEDKVILLLCI 103
E EFNKI+ +LENIEVHLED +++ C+
Sbjct: 179 ITELLVEFNKIIGDLENIEVHLEDAGALMVWCCL 280
>BF639450 similar to GP|21553596|gb| zinc finger protein {Arabidopsis
thaliana}, partial (23%)
Length = 533
Score = 26.9 bits (58), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (60%), Gaps = 4/31 (12%)
Frame = -1
Query: 74 HEEFNKILDNLENIE----VHLEDEDKVILL 100
H+E+N LDNL+ + VHL+ ++LL
Sbjct: 380 HKEYNPFLDNLDKVAL*YIVHLDQTKTLVLL 288
>AW584129 weakly similar to GP|13235641|em S-adenosyl-L-methionine:salicylic
acid carboxyl methyltransferase {Stephanotis
floribunda}, partial (31%)
Length = 568
Score = 26.2 bits (56), Expect = 1.9
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 4/38 (10%)
Frame = +2
Query: 76 EFNKILDNLENIEVHLEDEDKVILLLC----IPKSFES 109
+FN I +L+N + L+DE K + C +P SF S
Sbjct: 362 DFNNIFKSLDNFKEKLQDEIKTKMSSCYFFGVPGSFYS 475
>BF521385 similar to PIR|T39436|T394 very hypothetical protein SPBC14C8.08c -
fission yeast (Schizosaccharomyces pombe), partial (9%)
Length = 636
Score = 25.4 bits (54), Expect = 3.3
Identities = 10/29 (34%), Positives = 18/29 (61%)
Frame = +1
Query: 22 VDKVSIDVKKETTMHGGHVGKVGVIVYDQ 50
VD S+D+K+ + GH VG+I++ +
Sbjct: 133 VDSFSMDIKEYSASVSGHQFPVGIILFGE 219
>TC88970 similar to GP|16648969|gb|AAL24336.1 serine carboxypeptidase II
putative {Arabidopsis thaliana}, partial (90%)
Length = 1417
Score = 25.0 bits (53), Expect = 4.3
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 1 MSQEKMIE-MADKATSLIVLCLVDKVSIDVKKETTMHGGHVGKVGVIVYD 49
+SQ K+I +A +I +C+ DKV+ + + H VGV +D
Sbjct: 884 LSQSKVISPQPQQANEMIDVCVDDKVTNYLNRRDVQEALHAKLVGVRKWD 1033
>BF639328 similar to GP|8778394|gb|A F16A14.18 {Arabidopsis thaliana},
partial (6%)
Length = 533
Score = 24.3 bits (51), Expect = 7.3
Identities = 11/17 (64%), Positives = 12/17 (69%)
Frame = +2
Query: 57 IPKTKFLLIKYEVK*SH 73
+P T FLLIKY K* H
Sbjct: 194 VPITTFLLIKYSSK*VH 244
>TC89561 similar to GP|9759196|dbj|BAB09733.1 GTPase activator protein of
Rab-like small GTPases-like protein {Arabidopsis
thaliana}, partial (12%)
Length = 769
Score = 24.3 bits (51), Expect = 7.3
Identities = 12/28 (42%), Positives = 20/28 (70%)
Frame = -3
Query: 74 HEEFNKILDNLENIEVHLEDEDKVILLL 101
H+EF+ D+ E E+ +DED+++LLL
Sbjct: 581 HDEFD---DDEEGDELFEDDEDELLLLL 507
>TC82547 weakly similar to GP|8778394|gb|AAF79402.1| F16A14.18 {Arabidopsis
thaliana}, partial (11%)
Length = 776
Score = 24.3 bits (51), Expect = 7.3
Identities = 11/17 (64%), Positives = 12/17 (69%)
Frame = +3
Query: 57 IPKTKFLLIKYEVK*SH 73
+P T FLLIKY K* H
Sbjct: 348 VPITTFLLIKYSSK*VH 398
>BQ135935 similar to PIR|C96779|C967 unknown protein F9E10.20 [imported] -
Arabidopsis thaliana, partial (10%)
Length = 672
Score = 23.9 bits (50), Expect = 9.6
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = -3
Query: 78 NKILDNLENIEVHLEDEDKVILLLCIPKSFESFRRPFSM 116
NK + + EV E E V+LLL + S ++PFS+
Sbjct: 289 NKFMVVAD*EEVSEEPEGSVLLLLHVIPRERSLKQPFSL 173
>BI308772 similar to GP|22353121|g cytokinin receptor {Catharanthus roseus},
partial (25%)
Length = 812
Score = 23.9 bits (50), Expect = 9.6
Identities = 9/33 (27%), Positives = 24/33 (72%)
Frame = -2
Query: 74 HEEFNKILDNLENIEVHLEDEDKVILLLCIPKS 106
H F + + L ++E+H++++ ++ +L+C+P+S
Sbjct: 622 HRTFQRKVIEL-HLELHVDEKLQLQVLVCLPRS 527
>BF649332
Length = 651
Score = 23.9 bits (50), Expect = 9.6
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = -1
Query: 78 NKILDNLENIEVHLEDEDKVILLLCIPKSFESFRRPFSM 116
NK + + EV E E V+LLL + S ++PFS+
Sbjct: 237 NKFMVVAD*EEVSEEPEGSVLLLLHVIPRERSLKQPFSL 121
>TC78991 similar to GP|9759268|dbj|BAB09589.1 101 kDa heat shock protein;
HSP101-like protein {Arabidopsis thaliana}, partial (13%)
Length = 1370
Score = 23.9 bits (50), Expect = 9.6
Identities = 19/67 (28%), Positives = 31/67 (45%)
Frame = +2
Query: 31 KETTMHGGHVGKVGVIVYDQVFDS*TIPKTKFLLIKYEVK*SHHEEFNKILDNLENIEVH 90
+E +GG K ++ D V D+ F LI+ S + F+ ++ N +IEV
Sbjct: 1064 EENNHNGGSPSKPRELL-DSVDDAIVFKPLNFDLIRQNFSASIAKRFSAVVGNGISIEVQ 1240
Query: 91 LEDEDKV 97
E DK+
Sbjct: 1241 EEALDKI 1261
>TC76464 similar to GP|14532540|gb|AAK63998.1 At1g19180/T29M8_5 {Arabidopsis
thaliana}, partial (18%)
Length = 809
Score = 23.9 bits (50), Expect = 9.6
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = -1
Query: 78 NKILDNLENIEVHLEDEDKVILLLCIPKSFESFRRPFSM 116
NK + + EV E E V+LLL + S ++PFS+
Sbjct: 545 NKFMVVAD*EEVSEEPEGSVLLLLHVIPRERSLKQPFSL 429
>TC83993 similar to PIR|T04913|T04913 hypothetical protein T10I14.150 -
Arabidopsis thaliana, partial (21%)
Length = 847
Score = 23.9 bits (50), Expect = 9.6
Identities = 12/29 (41%), Positives = 16/29 (54%)
Frame = +2
Query: 74 HEEFNKILDNLENIEVHLEDEDKVILLLC 102
H F ++ N + E H+E ED ILL C
Sbjct: 110 HLYFFVVVSNSQT-ERHIESEDATILLFC 193
>TC76474 similar to GP|14532540|gb|AAK63998.1 At1g19180/T29M8_5 {Arabidopsis
thaliana}, partial (34%)
Length = 1004
Score = 23.9 bits (50), Expect = 9.6
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = -3
Query: 78 NKILDNLENIEVHLEDEDKVILLLCIPKSFESFRRPFSM 116
NK + + EV E E V+LLL + S ++PFS+
Sbjct: 306 NKFMVVAD*EEVSEEPEGSVLLLLHVIPRERSLKQPFSL 190
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.330 0.144 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,105,436
Number of Sequences: 36976
Number of extensions: 33448
Number of successful extensions: 195
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of query: 119
length of database: 9,014,727
effective HSP length: 95
effective length of query: 24
effective length of database: 5,502,007
effective search space: 132048168
effective search space used: 132048168
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)
Medicago: description of AC122729.1