BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122728.13 + phase: 0
(164 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79072 337 1e-93
BE318160 weakly similar to GP|10140803|gb putative myosin {Oryza... 29 0.97
TC83419 weakly similar to GP|12056928|gb|AAG48132.1 putative res... 28 1.7
AJ501531 similar to PIR|D71411|D714 hypothetical protein - Arabi... 28 2.2
BI311333 27 4.8
TC87442 similar to GP|15809940|gb|AAL06897.1 AT4g05150/C17L7_70 ... 27 4.8
TC87358 similar to GP|13272475|gb|AAK17176.1 unknown protein {Ar... 26 6.3
BQ137198 26 8.2
TC79266 homologue to GP|3243256|gb|AAC24007.1| phosphoribosylpyr... 26 8.2
TC87276 GP|11094367|gb|AAG29594.1 Ser/Thr specific protein phosp... 26 8.2
>TC79072
Length = 2401
Score = 337 bits (865), Expect = 1e-93
Identities = 164/164 (100%), Positives = 164/164 (100%)
Frame = +2
Query: 1 MKLVFESEKAEWIGTDKVIGCGFDPRQKKVFFTLDSELMHVVHCQTEEFSTPLYPTLAAN 60
MKLVFESEKAEWIGTDKVIGCGFDPRQKKVFFTLDSELMHVVHCQTEEFSTPLYPTLAAN
Sbjct: 1691 MKLVFESEKAEWIGTDKVIGCGFDPRQKKVFFTLDSELMHVVHCQTEEFSTPLYPTLAAN 1870
Query: 61 IDIMVLVNFGQNAFKYAPANAQRTPNPCLVSPLVSSPAAIGYDDDSKELFSMGRIDSHWL 120
IDIMVLVNFGQNAFKYAPANAQRTPNPCLVSPLVSSPAAIGYDDDSKELFSMGRIDSHWL
Sbjct: 1871 IDIMVLVNFGQNAFKYAPANAQRTPNPCLVSPLVSSPAAIGYDDDSKELFSMGRIDSHWL 2050
Query: 121 NRTTTKGSHNNGNNISTMDFDEESEADLFEIVIDGSRKSPSTTS 164
NRTTTKGSHNNGNNISTMDFDEESEADLFEIVIDGSRKSPSTTS
Sbjct: 2051 NRTTTKGSHNNGNNISTMDFDEESEADLFEIVIDGSRKSPSTTS 2182
>BE318160 weakly similar to GP|10140803|gb putative myosin {Oryza sativa},
partial (10%)
Length = 498
Score = 28.9 bits (63), Expect = 0.97
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 103 DDDSKELFSMGRIDSHWLNRTTTKGSHNNGNNISTMDFDEESEADLFEIVIDGS 156
+ +KE+ S+ N TK SH+ G N+S + D+E + +L E+V D S
Sbjct: 101 EQKNKEIHSLSN------NYKQTKNSHDLGRNVSNCETDDE-QKELDELVKDQS 241
>TC83419 weakly similar to GP|12056928|gb|AAG48132.1 putative resistance
protein {Glycine max}, partial (6%)
Length = 707
Score = 28.1 bits (61), Expect = 1.7
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 5 FESEKAEWIGTDKVIGCGFDPRQKKVFFTLDSELMHVVHCQ----TEEFSTPLYPTLAAN 60
F +K + K+ CG +F + LMH+ CQ +EE + + ++N
Sbjct: 107 FSIQKLARLQKLKLQMCGMVQLPSSIFMLPELSLMHISECQGLVLSEEDKSKEMASKSSN 286
Query: 61 IDIMVLVN 68
+D +VL N
Sbjct: 287 VDHLVLSN 310
>AJ501531 similar to PIR|D71411|D714 hypothetical protein - Arabidopsis
thaliana, partial (51%)
Length = 430
Score = 27.7 bits (60), Expect = 2.2
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 42 VHCQTEEFSTP--LYPTLAANIDIMVLVNFGQNAFKY 76
+HC ++ S P + PT N+D+ + + G + F+Y
Sbjct: 18 IHCLKQKHSCPCLVSPTTTTNLDVSLTCSAGSSNFRY 128
>BI311333
Length = 706
Score = 26.6 bits (57), Expect = 4.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 26 RQKKVFFTLDSELMHVVHCQTEEFSTPLYPTLAANIDIMVLV 67
+ K V F + + MHV+ E + TP YP + DI +L+
Sbjct: 381 KMKHVTFHIIQKHMHVLCISIESYLTPKYPKKSFLHDIKLLL 256
>TC87442 similar to GP|15809940|gb|AAL06897.1 AT4g05150/C17L7_70 {Arabidopsis
thaliana}, partial (26%)
Length = 1572
Score = 26.6 bits (57), Expect = 4.8
Identities = 19/71 (26%), Positives = 32/71 (44%), Gaps = 1/71 (1%)
Frame = -1
Query: 40 HVVHCQTEEFS-TPLYPTLAANIDIMVLVNFGQNAFKYAPANAQRTPNPCLVSPLVSSPA 98
H + E F T L P +A+ D++V + Y P +++ PN P + P
Sbjct: 1179 HTLDPYPESFDDTRLVPEVASLDDMVVEHRDNVHVLAYEPVHSRVEPN-----PEYNKPE 1015
Query: 99 AIGYDDDSKEL 109
+ +DD +K L
Sbjct: 1014 PVVHDDQNKHL 982
>TC87358 similar to GP|13272475|gb|AAK17176.1 unknown protein {Arabidopsis
thaliana}, partial (92%)
Length = 1688
Score = 26.2 bits (56), Expect = 6.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 127 GSHNNGNNISTMDFDEESEADLFEIVI-DGSRKSPSTT 163
G H +G N+ TMD + +LF I+ R +PS++
Sbjct: 1448 GQHGDGRNLITMDMGFQMYIELFRILT*QKIRSNPSSS 1561
>BQ137198
Length = 944
Score = 25.8 bits (55), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = -1
Query: 117 SHWLNRTTTKGSHNNGNNISTMDF 140
+H L+RT T HNN +N + M+F
Sbjct: 359 AHVLSRTHTTTRHNNVDNQNAMEF 288
>TC79266 homologue to GP|3243256|gb|AAC24007.1| phosphoribosylpyrophosphate
amidotransferase {Vigna unguiculata}, partial (46%)
Length = 1187
Score = 25.8 bits (55), Expect = 8.2
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Frame = +2
Query: 67 VNFGQNAF----KYAPANAQRTPNPC---LVSPLVSSPAAIGYDDDSKELFSMGRIDSHW 119
V FG++ + ++ A +P C + P AA+GY + F G I SH+
Sbjct: 206 VVFGRSVYESRRRFGEVLATESPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHY 385
Query: 120 LNRTTTKGSHNNGNNISTMDFDEESEADLFEIVIDGSR 157
+ RT + S DF + + V++G R
Sbjct: 386 VGRTFIEPSQ------KIRDFGVKLKLSPVRAVLEGKR 481
>TC87276 GP|11094367|gb|AAG29594.1 Ser/Thr specific protein phosphatase 2A A
regulatory subunit beta isoform, partial (29%)
Length = 770
Score = 25.8 bits (55), Expect = 8.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 24 DPRQKKVFFTLDSELMHVVHCQTEEFS 50
DP Q K TL S HC+ +EFS
Sbjct: 75 DPIQSKFLSTLQSPSDQASHCRFQEFS 155
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,661,185
Number of Sequences: 36976
Number of extensions: 56115
Number of successful extensions: 379
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of query: 164
length of database: 9,014,727
effective HSP length: 89
effective length of query: 75
effective length of database: 5,723,863
effective search space: 429289725
effective search space used: 429289725
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC122728.13