BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122728.10 + phase: 0
(2239 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 392 e-109
CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fra... 299 9e-81
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 296 8e-80
AL366605 277 4e-74
AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia... 242 1e-63
AL367832 weakly similar to GP|14091845|gb Putative retroelement ... 242 1e-63
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 152 3e-59
AL375831 172 2e-57
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 180 6e-45
BE942785 131 3e-30
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 112 1e-24
TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC ... 91 4e-18
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 59 2e-17
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 85 3e-16
AL375832 83 1e-15
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 80 9e-15
BE124481 72 2e-12
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ... 66 2e-10
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 49 2e-05
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t... 49 2e-05
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 392 bits (1008), Expect = e-109
Identities = 186/197 (94%), Positives = 191/197 (96%)
Frame = -2
Query: 1638 KSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNN 1697
KSKDCEEPLI EGPDPNSKWGLVFDGAVNAYGKG+GAVIVSPQGH+IPFTARILFECTNN
Sbjct: 591 KSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNN 412
Query: 1698 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYF 1757
MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHA LIPY DYARRLLTYF
Sbjct: 411 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF 232
Query: 1758 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAIGDVIDQAGE 1817
TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIK QRLERPSHVFAIG+VIDQ GE
Sbjct: 231 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGNVIDQTGE 52
Query: 1818 NVVGYRPWYYDIKQFLL 1834
NVV Y+PWYYDIKQFL+
Sbjct: 51 NVVDYKPWYYDIKQFLV 1
>CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fragment),
partial (9%)
Length = 624
Score = 299 bits (765), Expect = 9e-81
Identities = 145/172 (84%), Positives = 152/172 (88%)
Frame = -2
Query: 432 PVQQQQQNQQARPTFPPIPMLYAELLPTLLQRGHCTTRQGKPPPDPLPPRFRSDLKCDFH 491
PV QQ+Q QQARPTFP IPMLYAE LPTLL RGHCT RQGKPPPDPLPPRFRSDLKCDFH
Sbjct: 518 PVHQQRQ*QQARPTFPLIPMLYAE*LPTLLLRGHCTIRQGKPPPDPLPPRFRSDLKCDFH 339
Query: 492 QGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHATVNMIEVCEEAPRLD 551
QGALGHDVEGCYALK+IVKKLI+QGKLTFENNVPHVLDNPLPNHA VNMIEV EEAP LD
Sbjct: 338 QGALGHDVEGCYALKHIVKKLINQGKLTFENNVPHVLDNPLPNHAAVNMIEVYEEAPGLD 159
Query: 552 VRNVATPLVPLHIKLRKASLFNHDHAKCLGCLRDPLGCYTVQEDIQSLMNDN 603
VRNV TPLVPLHIKL +ASLF+HDHA C +PLGC VQ DIQSLMN+N
Sbjct: 158 VRNVTTPLVPLHIKLCQASLFDHDHANCQE*FYNPLGCCVVQNDIQSLMNNN 3
Score = 60.1 bits (144), Expect = 1e-08
Identities = 34/50 (68%), Positives = 38/50 (76%)
Frame = -1
Query: 3 EENTQLRTELASLREELAKAHDAMTALLAAQEQPVPVVSTAANVTPTVTT 52
EEN QLRTELAS+REELAKA+D MTALLAAQEQ S+ + T TV T
Sbjct: 624 EENAQLRTELASMREELAKANDTMTALLAAQEQ-----SSTGSPTTTVAT 490
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 296 bits (757), Expect = 8e-80
Identities = 131/167 (78%), Positives = 155/167 (92%)
Frame = -2
Query: 1542 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKT 1601
KTCCALAWAAKRLRHY++NHTTWL+S+MDPIKYIFEK A+TG+IARWQMLLSEYDI +++
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 1602 QKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVF 1661
QKAIKGSILADHLA+QPL+DY+ I+FDFPDEEIMYLK KDC+EPL EGPDP+S WGL+F
Sbjct: 455 QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276
Query: 1662 DGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1708
DGAVN YG G+GAV+++P+G HIPFTAR+ F+CTNN+AEYEACI GI
Sbjct: 275 DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135
Score = 48.1 bits (113), Expect = 4e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +2
Query: 1508 CVLGQQDETGKKEHAIYYLSKKFT 1531
CVLGQQDETG+KEHAIYYLS+K +
Sbjct: 38 CVLGQQDETGRKEHAIYYLSRKLS 109
>AL366605
Length = 422
Score = 277 bits (708), Expect = 4e-74
Identities = 130/139 (93%), Positives = 136/139 (97%)
Frame = -3
Query: 147 EIKANRGNGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDN 206
EIKANRGN DS KTQDLCLVSKVDVPKKFK+P+FD+YNGLTCPQNHI+KYVRKMGNYKDN
Sbjct: 417 EIKANRGNADSFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDN 238
Query: 207 DSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQ 266
DSLMIH FQDSLMEDAAEWYTSLSK+D+HTFDELAAAFKSHYGFNTRLKPNREFLRSLSQ
Sbjct: 237 DSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQ 58
Query: 267 KKEESFREYAQRWRGAAAR 285
KKEESFREYAQRWRGAAAR
Sbjct: 57 KKEESFREYAQRWRGAAAR 1
>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana chromosome
II BAC F26H6; putative retroelement pol polyprotein,
partial (1%)
Length = 488
Score = 242 bits (618), Expect = 1e-63
Identities = 123/180 (68%), Positives = 137/180 (75%)
Frame = +1
Query: 897 VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLSSF 956
+TFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNG
Sbjct: 1 ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNG------------------- 123
Query: 957 SCVEAGSAEGTAFQGLTIESAESKEAGAAMASLKDAQRAIQEGQTAGWGKMIQLCENKRK 1016
SAEGTAFQGL++E AE K+ GAAMASLKDAQ+A+QEGQ A WGK+IQLCENKRK
Sbjct: 124 ------SAEGTAFQGLSMEGAEPKKVGAAMASLKDAQKAVQEGQAADWGKLIQLCENKRK 285
Query: 1017 EGLGFSPSSRVSSGVFHSAGFVNAISEEATGSGLRPAFVTPGGIATNWDAIDIPSIMHVS 1076
EGL FSP+S VS+G FHSAGFVN ++EE RP FV PGGIA +WDA+D+PSIMHVS
Sbjct: 286 EGLRFSPTSGVSTGTFHSAGFVNTLAEEVARFVPRPLFVIPGGIAKDWDAVDVPSIMHVS 465
>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
sativa}, partial (2%)
Length = 384
Score = 242 bits (617), Expect = 1e-63
Identities = 118/128 (92%), Positives = 122/128 (95%)
Frame = -1
Query: 1120 QEKKAIQPHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMP 1179
QE+KAIQPHQEEIELIN+GTEENKREIK+GA LEEGVK+KI QLLREY DIFA SYEDMP
Sbjct: 384 QERKAIQPHQEEIELINLGTEENKREIKVGAALEEGVKRKIFQLLREYLDIFACSYEDMP 205
Query: 1180 GLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI 1239
GLDP IVEHRIPTKPECPPVR KLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI
Sbjct: 204 GLDPKIVEHRIPTKPECPPVR*KLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI 25
Query: 1240 VPVPKKDG 1247
VPVPKKDG
Sbjct: 24 VPVPKKDG 1
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 152 bits (383), Expect(2) = 3e-59
Identities = 70/136 (51%), Positives = 101/136 (73%)
Frame = +2
Query: 1299 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 1358
M P+D EKT+FIT GT+CYKVMPFGL NAG+TYQR + +F D + +EVY+DDM+VK
Sbjct: 2 MHPDDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVK 181
Query: 1359 SADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 1418
S H+ +L + F+ L +Y ++LNP KCTFGV SG+ LG+IV+Q+GIEV+P ++ AI
Sbjct: 182 SLRATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAIL 361
Query: 1419 EMPAPQTEKQVRGFLG 1434
++P+P+ ++V+ G
Sbjct: 362 DLPSPKNSREVQRLTG 409
Score = 97.4 bits (241), Expect(2) = 3e-59
Identities = 49/120 (40%), Positives = 75/120 (61%)
Frame = +3
Query: 1434 GRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGR 1493
GR+ ++RFIS T C P +KLL N+ VW+++C+EAF+ +K YL PP+L P G
Sbjct: 408 GRIAALNRFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGD 587
Query: 1494 PLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKR 1553
L +Y+A+ ++ VL ++D +K I+Y SK+ TD ETRY LEK A+ +A++
Sbjct: 588 TLSLYIAISSTAVSSVLIREDRGEQK--PIFYTSKRMTDPETRYPTLEKMAFAVITSARK 761
>AL375831
Length = 467
Score = 172 bits (436), Expect(2) = 2e-57
Identities = 80/119 (67%), Positives = 92/119 (77%)
Frame = +2
Query: 87 IPGANLTPVSTALTQAATTVTEPIVNAVPLFVHANAHHGSIATTGNMEERMEELAKELRR 146
IP N + L Q VTEP+V+ +P ++ N H SI T MEE MEELAKELR
Sbjct: 8 IPATNAASIIATLPQTTAAVTEPLVHTLPQGININTQHRSIPVTKTMEEMMEELAKELRH 187
Query: 147 EIKANRGNGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKD 205
EI+ANRGN DS+KTQDLCLVSKVDVPKKFK+P+FD+YNGLTCPQNHI+KYVRKMGNYKD
Sbjct: 188 EIQANRGNADSVKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKD 364
Score = 71.2 bits (173), Expect(2) = 2e-57
Identities = 32/36 (88%), Positives = 34/36 (93%)
Frame = +3
Query: 204 KDNDSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFDE 239
K NDSLMIH FQDSLMEDAAEWYTSLSK+D+HTFDE
Sbjct: 360 KTNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDE 467
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 180 bits (456), Expect = 6e-45
Identities = 122/398 (30%), Positives = 199/398 (49%), Gaps = 7/398 (1%)
Frame = +1
Query: 1163 LLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPEC----PPVRQ-KLRRTHPDMALKIKSE 1217
+L E+PD+F +++H IP P+ PP+ L L +K
Sbjct: 343 VLEEFPDLFNPEKAYQVPASRGLLDHAIPLIPDKDGNDPPLPWGPLYGMSRQELLVLKKT 522
Query: 1218 VQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVD 1277
++ +D GF+ A ++ V K G +R CVD+R LN + KD +PLP I +
Sbjct: 523 LEDLLDKGFIKASGSAAG-APVLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETLR 699
Query: 1278 NTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMT 1337
A ++ F+ +D + ++++++ ED+EKT+F T +G F + V PFGL A AT+QR +
Sbjct: 700 RVAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRTRYGLFEWIVCPFGLTGAPATFQRYIN 879
Query: 1338 TLFHDMIHKEVEVYVDDMIV-KSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGK 1396
H+ + V Y+DD+++ + ++ H + ++ RL L L+P KC F V + K
Sbjct: 880 KTLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVLRRLADAGLSLDPKKCEFSVTTVK 1059
Query: 1397 LLGFIVSQ-KGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFK 1455
+GFI++ KG+ DP K+ AIR+ P + K R FLG NY FI + P+ +
Sbjct: 1060 YVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLGFCNYYKDFIPGYSEITEPLTR 1239
Query: 1456 LLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDE 1515
L RK+ P W E + AF +K E P+L + ++G VL Q+D
Sbjct: 1240 LTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTTVETDCSGFALGGVLTQEDG 1419
Query: 1516 TGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKR 1553
TG H + + S++ + E Y + +K A+ WA R
Sbjct: 1420 TG-AAHPVAFHSQRLSPAEYNYPIHDKELLAV-WACLR 1527
>BE942785
Length = 460
Score = 131 bits (330), Expect = 3e-30
Identities = 63/82 (76%), Positives = 71/82 (85%)
Frame = -2
Query: 936 NGKLVTIHGEEAYLVSQLSSFSCVEAGSAEGTAFQGLTIESAESKEAGAAMASLKDAQRA 995
+G LVTIHGEEAYL+SQLSSFSC+EAGSAEGTAFQGLT+E E K G AMASLKDAQRA
Sbjct: 378 SGXLVTIHGEEAYLISQLSSFSCIEAGSAEGTAFQGLTVEGTEPKRDGTAMASLKDAQRA 199
Query: 996 IQEGQTAGWGKMIQLCENKRKE 1017
+QE Q AGWG++IQL ENK K+
Sbjct: 198 VQESQAAGWGRLIQLRENKHKD 133
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 112 bits (281), Expect = 1e-24
Identities = 62/196 (31%), Positives = 97/196 (48%)
Frame = +2
Query: 1856 RFLLDGDILYKRNYDMVLLRCVDEHEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWM 1915
R+L D LYK+ D + +RCV E E ++ H + H K+ +AG++W
Sbjct: 17 RYLWDEPFLYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGFWWP 196
Query: 1916 AMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRF 1975
M D + + KC CQ + N + F +WGID +G +N ++
Sbjct: 197 TMFKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFPSSYNN--KY 370
Query: 1976 ILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALC 2035
ILVA+DY +KWVEA + VV K K+ I R+GVP +I+D G++ N V + L
Sbjct: 371 ILVAVDYVSKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLL 550
Query: 2036 EEFKIEHHNSSPYRPQ 2051
++ + H ++ Y PQ
Sbjct: 551 KKNGVRHKVATAYHPQ 598
>TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC 4.6.1.1)
(ATP pyrophosphate-lyase) (Adenylyl cyclase). [Yeast],
partial (0%)
Length = 665
Score = 91.3 bits (225), Expect = 4e-18
Identities = 56/137 (40%), Positives = 70/137 (50%), Gaps = 11/137 (8%)
Frame = +3
Query: 403 PPFYHQYPLPPGQPQVPVNAIAQQMKQQMPVQQQQQNQQARPTFP-----------PIPM 451
PP Q P P QP P Q+ +QQ P Q QNQ + P PIP+
Sbjct: 228 PPLVQQRPQSPYQPMCP-----QKPRQQAPRQSIPQNQVPQKFIPQNQVQKASQCDPIPV 392
Query: 452 LYAELLPTLLQRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKK 511
YA+LLP LL++ T P+ LPP +R DL C FHQGA GHD E CY LK V+K
Sbjct: 393 KYADLLPILLKKNLIQTLPLPRVPNSLPPWYRPDLNCVFHQGAPGHDTEQCYPLKEEVQK 572
Query: 512 LIDQGKLTFENNVPHVL 528
LI+ +F++ VL
Sbjct: 573 LIENNVWSFDDQDIKVL 623
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 686
Score = 58.9 bits (141), Expect(2) = 2e-17
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Frame = -3
Query: 2085 LHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL---RVIMEAKLSEAEWCQSRYDQL 2141
L +RT R +T +TPFS+ + +EA+ P EV + SL R+ +L+ ++ L
Sbjct: 462 LWSHRTNPRGATKSTPFSMAHRVEAMAPAEVNVTSL*RSRMPQNIELNN----DRLFNAL 295
Query: 2142 NLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVLKRRISQQPD-PRGKWTPNY 2200
IEE+R A+ R +YQ ++++ ++K V + K+G++VL + + GK N+
Sbjct: 294 ETIEERRDQALLRIQNYQHQIESYYNKTVKSQPLKLGDIVLCKVFENTKELNAGKLGTNW 115
Query: 2201 EG 2202
EG
Sbjct: 114 EG 109
Score = 50.4 bits (119), Expect(2) = 2e-17
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = -2
Query: 2012 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI 2063
+G+P +I+TDNG++ +N + CE ++I + +SP PQ NG EA+NK I
Sbjct: 685 HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKII 530
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 85.1 bits (209), Expect = 3e-16
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 5/230 (2%)
Frame = +2
Query: 1186 VEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKK 1245
++ I P P+ R +P +K +++ ++ GF+ YP V ++ + KK
Sbjct: 35 IDFGIDLLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVV-VLFLKKK 211
Query: 1246 DGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDRE 1305
DG +RM +D+ LN + K +PLP ID L DN SK F +D G +Q ++ ED
Sbjct: 212 DGFLRMSIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVIGEDVP 391
Query: 1306 KTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQH 1365
KT+F +G + VM FG N + M +F D + V V+ +D+++ S +E +H
Sbjct: 392 KTAFRIRYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSKNENEH 571
Query: 1366 VEYLTKMFERLRKYKLRLNPNKCTFG-----VRSGKLLGFIVSQKGIEVD 1410
+L + L+ L C V G ++S +G++VD
Sbjct: 572 ENHLRLALKVLKDIGL------CQISYV*ILVEVGFFSLHVISGEGLKVD 703
>AL375832
Length = 535
Score = 82.8 bits (203), Expect = 1e-15
Identities = 39/41 (95%), Positives = 41/41 (99%)
Frame = +3
Query: 1037 FVNAISEEATGSGLRPAFVTPGGIATNWDAIDIPSIMHVSE 1077
FVNAISEEATGSGLRPAFVTPGGIA++WDAIDIPSIMHVSE
Sbjct: 3 FVNAISEEATGSGLRPAFVTPGGIASDWDAIDIPSIMHVSE 125
Score = 34.7 bits (78), Expect(2) = 2e-04
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 1075 VSELNHNKPVEHSNPTVPPSFD 1096
+ LNHNKPVEHSN P+FD
Sbjct: 418 ICRLNHNKPVEHSNSMPLPNFD 483
Score = 30.4 bits (67), Expect(2) = 2e-04
Identities = 12/17 (70%), Positives = 14/17 (81%)
Frame = +3
Query: 1097 FPVYEAEDEEGDNIPYE 1113
FPVYE + EGD+IPYE
Sbjct: 483 FPVYEPKMREGDDIPYE 533
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial (14%)
Length = 1708
Score = 80.1 bits (196), Expect = 9e-15
Identities = 79/354 (22%), Positives = 144/354 (40%), Gaps = 16/354 (4%)
Frame = +2
Query: 1884 QLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPH 1943
+LV + HD T H G + +++ ++W ++ R C C IH+
Sbjct: 176 KLVQESHDSTAAGHP-GRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVC----GGIHIWRQ 340
Query: 1944 ALNVMSSPWPF-----SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 1998
A P P S +D I + P G +++ V +D +K V + +
Sbjct: 341 AKRGFLKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAE 520
Query: 1999 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEA 2058
A+ + +G+P I++D G+N + C + S+ Y PQ +G E
Sbjct: 521 ACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTER 700
Query: 2059 ANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 2117
N+ I+ +++ V +D W ++LP R SS GATPF + +G V P+
Sbjct: 701 WNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGYH-VDPIPTVE 877
Query: 2118 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPRE-FK 2176
+ V+ E + + + D I+ + + A Q R +A+ +K+ P + ++
Sbjct: 878 DTGGVVSEGEAAAQLLVKRMKDVTGFIQAEIVAA-------QQRSEASANKRRCPADRYQ 1036
Query: 2177 VGELV---LKRRISQQPDPRGKW------TPNYEGPYVVKKAFSGGALILTHMD 2221
VG+ V + S +P + W + P+VV+ G H+D
Sbjct: 1037 VGDKVWLNVSNYKSPRPSKKLDWLHHKYEVTRFVTPHVVELNVPGTVYPKFHVD 1198
>BE124481
Length = 538
Score = 72.4 bits (176), Expect = 2e-12
Identities = 44/107 (41%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Frame = +3
Query: 403 PPFYHQYPLPPGQPQVPVNAIAQQMKQQMPVQQQQQNQQARPTFP-----------PIPM 451
PP Q P P QP P Q+ +QQ P Q QNQ + P PIP+
Sbjct: 231 PPLVQQRPQSPYQPMCP-----QKPRQQAPRQSIPQNQVPQKFIPQNQVQKASQCDPIPV 395
Query: 452 LYAELLPTLLQRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHD 498
YA+LLP LL++ T P+ LPP +R DL C FHQGA GHD
Sbjct: 396 KYADLLPILLKKNLIQTLPLPRVPNSLPPWYRPDLNCVFHQGAPGHD 536
>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(13%)
Length = 415
Score = 65.9 bits (159), Expect = 2e-10
Identities = 38/109 (34%), Positives = 55/109 (49%)
Frame = +3
Query: 1673 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1732
G + SP + + R+ F +NN YEA I G+ A ++I+++ Y DS LV +Q
Sbjct: 3 GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182
Query: 1733 KGEWETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALATLSS 1781
GE+E + Y ++L L IPR EN ADALA L+S
Sbjct: 183 SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALAS 329
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/56 (42%), Positives = 31/56 (54%)
Frame = +1
Query: 1503 DESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYL 1558
D +G L Q+DE EH I Y S+ T E YT++E+ C A WA + RHYL
Sbjct: 7 DWGIGAGLSQKDEENH-EHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYL 171
>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
partial (6%)
Length = 469
Score = 48.9 bits (115), Expect = 2e-05
Identities = 35/101 (34%), Positives = 51/101 (49%), Gaps = 3/101 (2%)
Frame = +1
Query: 2140 QLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVL--KRRISQQPDPRGKWT 2197
+LN +EE R+DA Y+ R K D+++ REF+ GELVL R+ P GK
Sbjct: 103 ELNELEELRLDAYENAKIYKERTKKWHDRRIIRREFREGELVLLFNSRLKLFP---GKLR 273
Query: 2198 PNYEGPYVVKKAFSGGAL-ILTHMDGVELPNPVNADIVKKY 2237
++ GP+ VK GA+ + + G P VN +K Y
Sbjct: 274 SHWSGPFQVKNVMPSGAVEVWSESTG---PFTVNGQRLKHY 387
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,428,439
Number of Sequences: 36976
Number of extensions: 984047
Number of successful extensions: 5985
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 5334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5918
length of query: 2239
length of database: 9,014,727
effective HSP length: 111
effective length of query: 2128
effective length of database: 4,910,391
effective search space: 10449312048
effective search space used: 10449312048
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Medicago: description of AC122728.10