BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122726.12 + phase: 0
(280 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ146895 similar to GP|11994194|dbj gene_id:MPN9.7~unknown prote... 284 3e-77
TC77970 similar to GP|20197686|gb|AAM15203.1 expressed protein {... 37 0.006
TC82556 similar to GP|21536965|gb|AAM61306.1 putative zinc finge... 36 0.019
TC82750 similar to GP|21592759|gb|AAM64708.1 unknown {Arabidopsi... 34 0.071
AL389472 similar to GP|6648206|gb|A putative GTPase activating p... 33 0.093
TC89510 weakly similar to GP|22831331|dbj|BAC16176. contains EST... 33 0.093
TC78567 similar to PIR|T04143|T04143 CLB1 protein - tomato, part... 32 0.27
BF632358 weakly similar to GP|19352296|gb MULTIPLE BANDED ANTIGE... 32 0.35
TC80044 weakly similar to GP|7300238|gb|AAF55402.1| CG4090 gene ... 31 0.46
TC91264 weakly similar to PIR|T27543|T27543 hypothetical protein... 31 0.60
TC79532 weakly similar to GP|8164030|gb|AAF73960.1| SGS3 {Arabid... 31 0.60
AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapi... 30 0.79
TC92853 similar to GP|20268748|gb|AAM14077.1 unknown protein {Ar... 30 1.0
TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d... 30 1.0
TC77438 homologue to PIR|T06807|T06807 nucleosome assembly prote... 30 1.0
TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {... 30 1.0
TC88579 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d... 30 1.3
TC78829 similar to PIR|T49017|T49017 hypothetical protein F3C22.... 29 1.8
BQ750934 similar to PIR|T19673|T19 hypothetical protein C33B4.3 ... 29 1.8
TC77279 similar to GP|15215827|gb|AAK91458.1 AT4g15470/dl3775w {... 29 2.3
>BQ146895 similar to GP|11994194|dbj gene_id:MPN9.7~unknown protein
{Arabidopsis thaliana}, partial (6%)
Length = 531
Score = 284 bits (726), Expect = 3e-77
Identities = 147/149 (98%), Positives = 147/149 (98%)
Frame = +2
Query: 132 EILLRLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTDKESF 191
EILLRLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEANVTDK GVRESAYPTDKESF
Sbjct: 2 EILLRLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKMGVRESAYPTDKESF 181
Query: 192 MDVLAAIIVSEEFQGIVASETGFTKGLDNGSNTGSKASKSPVANAESIPPSADNSEGSSG 251
MDVLAAIIVSEEFQGIVASETGFTKGLDNGSNTGSKASKSPVANAESIPPSADNSEGSSG
Sbjct: 182 MDVLAAIIVSEEFQGIVASETGFTKGLDNGSNTGSKASKSPVANAESIPPSADNSEGSSG 361
Query: 252 GSALFWLAVITSIAVLIAVNISGSSIFNP 280
GSALFWLAVIT IAVLIAVNISGSSIFNP
Sbjct: 362 GSALFWLAVITXIAVLIAVNISGSSIFNP 448
>TC77970 similar to GP|20197686|gb|AAM15203.1 expressed protein {Arabidopsis
thaliana}, partial (97%)
Length = 2062
Score = 37.4 bits (85), Expect = 0.006
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Frame = +2
Query: 9 VGELSVTLVDARKLPY--FFGKTDPYVILSLGDQTIRSKKNSQTTVIGWRPWNANLESAP 66
VG L V ++ A KL G +DPYV L L D + SKK TTV + N N E
Sbjct: 947 VGILHVKVLHAMKLKKKDLLGASDPYVKLKLTDDKMPSKK---TTV---KHKNLNPE-WN 1105
Query: 67 QDFHMLVSNPKKQKLSIQVKD--ALGFADLTIGTGEVDLGSLQDTVP---TDRIVALQGG 121
++F+++V +P+ Q L + V D +G D +G + L + P T ++
Sbjct: 1106 EEFNLVVKDPETQVLQLNVYDWEQVGKHD-KMGMNVITLKEVSPEEPKRFTLDLLKTMDP 1282
Query: 122 WGFLRKGLSGEILLRLTYKAYVEDE 146
+ G+I++ +TYK E+E
Sbjct: 1283 NDAQNEKSRGQIVVEVTYKPLNEEE 1357
>TC82556 similar to GP|21536965|gb|AAM61306.1 putative zinc finger and C2
domain protein {Arabidopsis thaliana}, partial (40%)
Length = 756
Score = 35.8 bits (81), Expect = 0.019
Identities = 28/79 (35%), Positives = 42/79 (52%), Gaps = 1/79 (1%)
Frame = +3
Query: 29 TDPYVILSLGDQTIRSKKNSQTTVIGWRPWNANLESAPQDFHMLVSNPKKQKLSIQVKDA 88
+DPYV+L+LG QT+ QT+V+ +NL + HML +L ++V D
Sbjct: 42 SDPYVVLNLGTQTV------QTSVM-----RSNLNPVWNEEHMLSVPEHYGQLKLKVFDH 188
Query: 89 LGF-ADLTIGTGEVDLGSL 106
F AD +G ++DL SL
Sbjct: 189 DTFSADDIMGEADIDLQSL 245
>TC82750 similar to GP|21592759|gb|AAM64708.1 unknown {Arabidopsis
thaliana}, partial (95%)
Length = 623
Score = 33.9 bits (76), Expect = 0.071
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +3
Query: 7 DSVGELSVTLVDARKLPYFFGKT-DPYVILSLGDQTIRSK 45
+ +G+L V +V ++L KT DPYV+L LG+QT ++K
Sbjct: 69 EQLGQLKVIVVQGKRLVIRDFKTSDPYVVLKLGNQTAKTK 188
>AL389472 similar to GP|6648206|gb|A putative GTPase activating protein
{Arabidopsis thaliana}, partial (24%)
Length = 487
Score = 33.5 bits (75), Expect = 0.093
Identities = 32/104 (30%), Positives = 52/104 (49%), Gaps = 4/104 (3%)
Frame = +1
Query: 4 GNMDSVGELSVTLVDARKLPYF-FGKTDPYVILSLGDQTIRSK--KNSQTTVIGWRPWNA 60
G ++ VG + V +V L +DPYVILSLG Q+++++ KN+ V WN
Sbjct: 211 GMVEFVGLIKVNVVKGTNLAIRDIVTSDPYVILSLGHQSVKTRVIKNNLNPV-----WNE 375
Query: 61 NLE-SAPQDFHMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDL 103
+L S P++ L K+ + KD+ D +G E+D+
Sbjct: 376 SLMLSIPENIPPL-------KIIVYDKDSFKNDDF-MGEAEIDI 483
>TC89510 weakly similar to GP|22831331|dbj|BAC16176. contains ESTs
AU165964(S1723) D40008(S1723)~phosphoribosylanthranilate
transferase-like protein, partial (21%)
Length = 1195
Score = 33.5 bits (75), Expect = 0.093
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +3
Query: 12 LSVTLVDARKLPYF--FGKTDPYVILSLGD---QTIRSKKNSQTTVIGWRPWNANLESAP 66
L + +V AR LP G DPYVI+ +G+ T +KN+ WN A
Sbjct: 834 LFIRVVKARDLPRMDLTGSLDPYVIVKVGNFKGTTNHFEKNNSPE------WNLVFAFAK 995
Query: 67 QDFHMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDLGSLQDTVPTDRIVALQ 119
+ N + L + +KD D +GT DL + VP D +A Q
Sbjct: 996 E-------NQQATTLEVVIKDKDTIHDDFVGTVRFDLYDVPKRVPPDSPLAPQ 1133
>TC78567 similar to PIR|T04143|T04143 CLB1 protein - tomato, partial (53%)
Length = 1159
Score = 32.0 bits (71), Expect = 0.27
Identities = 35/113 (30%), Positives = 53/113 (45%), Gaps = 3/113 (2%)
Frame = +3
Query: 10 GELSVTLVDARKLPYF--FGKTDPYVILSLGDQTIRSKKNSQTTVIGWRPWNANLESA-P 66
G L VT+V A L GK+DPYV+L IR +T VI N NL
Sbjct: 174 GSLKVTIVKATDLKNMEMIGKSDPYVVL-----YIRPLFKVKTKVI-----NNNLNPVWD 323
Query: 67 QDFHMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDLGSLQDTVPTDRIVALQ 119
Q F ++ + + Q L ++V D D +G ++ L L+ V T++ + L+
Sbjct: 324 QTFELIAEDKETQSLILEVFDEDIGQDKRLGIVKLPLIELE--VQTEKELELR 476
>BF632358 weakly similar to GP|19352296|gb MULTIPLE BANDED ANTIGEN
(FRAGMENT). 6/101 {Dictyostelium discoideum}, partial
(3%)
Length = 578
Score = 31.6 bits (70), Expect = 0.35
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 147 EDDKTEEDSIDIDVSDDELSDTEEANVTD 175
ED++ E+DS D+D D++ D EE N +D
Sbjct: 428 EDEEEEKDSDDVDYDDNDDHDAEEGNDSD 514
>TC80044 weakly similar to GP|7300238|gb|AAF55402.1| CG4090 gene product
{Drosophila melanogaster}, partial (2%)
Length = 1225
Score = 31.2 bits (69), Expect = 0.46
Identities = 16/49 (32%), Positives = 26/49 (52%)
Frame = -2
Query: 124 FLRKGLSGEILLRLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEAN 172
FL LS E + ED+ DD+ +ED +D ++ +DE+ D E +
Sbjct: 330 FLEDNLSDE---------FQEDDIDDEFQEDDLDDEIQEDEIDDEFEVD 211
>TC91264 weakly similar to PIR|T27543|T27543 hypothetical protein ZC395.10 -
Caenorhabditis elegans, partial (24%)
Length = 767
Score = 30.8 bits (68), Expect = 0.60
Identities = 15/52 (28%), Positives = 26/52 (49%)
Frame = -3
Query: 207 IVASETGFTKGLDNGSNTGSKASKSPVANAESIPPSADNSEGSSGGSALFWL 258
+V S T G+ + ++ +++ SP+ +SIPP SS S+ F L
Sbjct: 456 LVVSSTVSKPGISSSESSSAESEPSPIRLEKSIPPIGSGPPSSSSSSSSFHL 301
>TC79532 weakly similar to GP|8164030|gb|AAF73960.1| SGS3 {Arabidopsis
thaliana}, partial (47%)
Length = 1558
Score = 30.8 bits (68), Expect = 0.60
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 118 LQGGWGFLRKGLSGEIL---LRLTYKAYVEDEEDDKTEEDSIDIDVSDDEL-SDTEEANV 173
LQGGW + EI+ +D+++++ E+D D++ +DD+L SD +++
Sbjct: 577 LQGGWNWKSTHARNEIVPEEFEQKNDGEEDDDDEEEEEDDCDDLEDTDDDLMSDEYDSDA 756
Query: 174 TDKT 177
+ K+
Sbjct: 757 SQKS 768
>AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapiens},
partial (2%)
Length = 466
Score = 30.4 bits (67), Expect = 0.79
Identities = 16/60 (26%), Positives = 32/60 (52%), Gaps = 1/60 (1%)
Frame = -3
Query: 144 EDEEDDKTEEDSIDIDVSDDE-LSDTEEANVTDKTGVRESAYPTDKESFMDVLAAIIVSE 202
EDE++D+ E++ D D D+E L ++E + +D + + A+ + F + +V E
Sbjct: 374 EDEDEDEDEDEDEDEDEDDEELLEESESESESDSSFLAGVAFAAETAGFFTLETEELVEE 195
Score = 26.9 bits (58), Expect = 8.7
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = -3
Query: 148 DDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTDKESFMDVLAAIIVSEEFQGI 207
DD+ E++ D D +DE D EE + ES ++ ES LA + + E G
Sbjct: 380 DDEDEDEDEDEDEDEDEDEDDEEL-------LEES--ESESESDSSFLAGVAFAAETAGF 228
Query: 208 VASET-GFTKGLDNGSNTGSKASKSPV 233
ET + L+ S + S++ + +
Sbjct: 227 FTLETEELVEELEEESESESESESTSI 147
>TC92853 similar to GP|20268748|gb|AAM14077.1 unknown protein {Arabidopsis
thaliana}, partial (21%)
Length = 761
Score = 30.0 bits (66), Expect = 1.0
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDK 176
E+EE+D+ EE+ D SDD+ S++EE N ++
Sbjct: 390 EEEEEDEDEEEE---DTSDDDGSESEEFNADEE 479
>TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
HD2-P39 {Glycine max}, partial (47%)
Length = 1233
Score = 30.0 bits (66), Expect = 1.0
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Frame = +2
Query: 149 DKTEEDSIDIDVSDDEL--SDTEEANVTDKTGVRESAYPTDKESFMDVLAAIIVSEEFQG 206
D +EDS D D SDDE+ SD E N + + + D+E
Sbjct: 560 DPKDEDSDDDDESDDEIGSSDDEMENADSDSEDEDDSDEDDEE----------------- 688
Query: 207 IVASETGFTKGLDNGSNTGSKASKSPVANAESIPPSADNSEGSSGG 252
ET K ASK+P+++ +S + + ++G G
Sbjct: 689 ----ETPVKKVDQGKKRPNESASKTPISSKKSKNATPEKTDGKKAG 814
>TC77438 homologue to PIR|T06807|T06807 nucleosome assembly protein 1 - garden
pea, partial (93%)
Length = 1607
Score = 30.0 bits (66), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDK 176
+D+EDD E+D D D +DE D +E K
Sbjct: 1046 DDDEDDDAEDDDEDEDEDEDEDDDEDEEETKTK 1144
Score = 27.7 bits (60), Expect = 5.1
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +2
Query: 145 DEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESA 183
D+EDD ++D+ D D +DE D ++ ++T ++ +
Sbjct: 1037 DDEDDDEDDDAEDDDEDEDEDEDEDDDEDEEETKTKKKS 1153
Score = 27.3 bits (59), Expect = 6.7
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Frame = +2
Query: 144 EDEEDDKTEED-SIDIDVSDDELSDTEEANVTDKTGVRES 182
+DE+DD ++D D D +D+ D EE K+ ++S
Sbjct: 1049 DDEDDDAEDDDEDEDEDEDEDDDEDEEETKTKKKSSAKKS 1168
>TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {Arabidopsis
thaliana}, partial (39%)
Length = 883
Score = 30.0 bits (66), Expect = 1.0
Identities = 29/110 (26%), Positives = 42/110 (37%), Gaps = 20/110 (18%)
Frame = +3
Query: 101 VDLGSLQDTVPTDRIVALQGGW---GFLRKGLSGEILLRLT-----------------YK 140
VDL SL V D +V+ G+L + + +LT YK
Sbjct: 126 VDLPSLLQAVAIDTLVSAAQSLALIGYLLINAANSVAPKLTAMDSRFPLEHLLGRKPAYK 305
Query: 141 AYVEDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTDKES 190
D EDD+ ++D D+ DD D EE + + G E D E+
Sbjct: 306 ENKSDTEDDEDDDDDDDVQDEDD---DGEEEDYSGDEGEEEGDPEDDPEA 446
>TC88579 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
HD2-P39 {Glycine max}, partial (40%)
Length = 1069
Score = 29.6 bits (65), Expect = 1.3
Identities = 15/41 (36%), Positives = 24/41 (57%)
Frame = +2
Query: 146 EEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPT 186
E ++++E D D+S +E SDTEE+ ++T ES T
Sbjct: 443 EPEEESESDFSGSDISINEESDTEESESEEETPASESEEET 565
>TC78829 similar to PIR|T49017|T49017 hypothetical protein F3C22.40 -
Arabidopsis thaliana, partial (31%)
Length = 1160
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 2/55 (3%)
Frame = +3
Query: 5 NMDSVGELSVTLVDARKLPYFFGK--TDPYVILSLGDQTIRSKKNSQTTVIGWRP 57
N+D V ELS LV + P F + DP +G + S +SQ + G+ P
Sbjct: 360 NVDDVTELSSILVSMDQFPTLFNRLSADPSFASKVGGVLVESGTDSQKKLNGFSP 524
>BQ750934 similar to PIR|T19673|T19 hypothetical protein C33B4.3 -
Caenorhabditis elegans, partial (1%)
Length = 627
Score = 29.3 bits (64), Expect = 1.8
Identities = 28/102 (27%), Positives = 41/102 (39%), Gaps = 6/102 (5%)
Frame = +2
Query: 154 DSIDIDVSDDELSDTEEANVTDKTG------VRESAYPTDKESFMDVLAAIIVSEEFQGI 207
D + + + E S TE++ +T T + +PT L A+ SE
Sbjct: 107 DRLQVYLFSPEASATEDSVLTSTTASSSVETTAAAVFPTTSAVANGTLTAVTASETVTDE 286
Query: 208 VASETGFTKGLDNGSNTGSKASKSPVANAESIPPSADNSEGS 249
VAS + T N S T A+ S A AE+ P + S S
Sbjct: 287 VASSSLSTLSATNSSVT--SAAPSFTAEAETTSPVSSASSTS 406
>TC77279 similar to GP|15215827|gb|AAK91458.1 AT4g15470/dl3775w {Arabidopsis
thaliana}, partial (82%)
Length = 1265
Score = 28.9 bits (63), Expect = 2.3
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +1
Query: 70 HMLVSNPKKQKLSIQVK-----DALGFADLTIGTGEVDLGSLQDTVPTDRIVALQGGWGF 124
++L+ +PKK+ + + D G+ + E+D+ S + P + Q WGF
Sbjct: 67 NLLIRSPKKKMMMFDQQPPHQQDKRGYTSVKRDEAELDIESGETLYPGLSLGENQLRWGF 246
Query: 125 LRKG---LSGEILL 135
+RK LS +ILL
Sbjct: 247 IRKVYGILSAQILL 288
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.310 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,300,129
Number of Sequences: 36976
Number of extensions: 65375
Number of successful extensions: 593
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of query: 280
length of database: 9,014,727
effective HSP length: 95
effective length of query: 185
effective length of database: 5,502,007
effective search space: 1017871295
effective search space used: 1017871295
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC122726.12