TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122169.6 + phase: 0 
         (622 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC81950                                                                30  3.6
TC77307 similar to PIR|T05402|T05402 H+-transporting ATP synthas...    29  6.1
TC81563 similar to GP|21593798|gb|AAM65765.1 unknown {Arabidopsi...    28  8.0
TC78294 similar to GP|19110917|gb|AAL85347.1 EDS1-like protein {...    28  8.0
BQ139859 similar to GP|8777484|dbj contains similarity to RNA-bi...    28  8.0
BF646560 similar to PIR|T08978|T08 serine proteinase homolog F6G...    28  8.0
TC86535 similar to GP|9758076|dbj|BAB08520.1 contains similarity...    28  8.0

>TC81950 
          Length = 449

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/49 (28%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
 Frame = -3

Query: 117 EYTQTYSRGKPVTTLNCVMLPFENKDRQGTRIKFW-PDKEVFTTAIEFE 164
           +Y +T    KP    NC++ P      +GTR K W P+ ++  + + F+
Sbjct: 192 KYFRTLRVAKPTKETNCLVPPLIVSSSRGTRGKTWHPNNQITKSTLAFQ 46


>TC77307 similar to PIR|T05402|T05402 H+-transporting ATP synthase (EC
           3.6.1.34) chain 9 - Arabidopsis thaliana, partial (72%)
          Length = 940

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 28/106 (26%), Positives = 46/106 (42%)
 Frame = +1

Query: 264 GTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKT 323
           GT +D   A +   LNS+   S+ +KE  +      V       ++V +   + E Q + 
Sbjct: 472 GTFMDNRDAEIRGKLNSVTNTSEEVKE--LEEQANAVLRAARAEIAVALNQMKKETQAEV 645

Query: 324 RLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKALNAFKAALA 369
                E RK VD  +QE L    +   + +     KAL++  AAL+
Sbjct: 646 EEKIAEGRKKVDAELQEALANLEKQKEETV-----KALDSQIAALS 768


>TC81563 similar to GP|21593798|gb|AAM65765.1 unknown {Arabidopsis
           thaliana}, partial (52%)
          Length = 1143

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 11/23 (47%), Positives = 16/23 (68%)
 Frame = -1

Query: 558 LGEMMPLQLWETTMDPEQRLLKK 580
           LG++M   LWE   +PEQ ++KK
Sbjct: 990 LGQLMFHHLWEQEQEPEQHIVKK 922


>TC78294 similar to GP|19110917|gb|AAL85347.1 EDS1-like protein {Nicotiana
           benthamiana}, partial (31%)
          Length = 1627

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 19/55 (34%), Positives = 22/55 (39%)
 Frame = +1

Query: 104 SEALEVTVWREGLEYTQTYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFT 158
           +E  E T W E  E     S  KP   +   +L  E        IK W DKEV T
Sbjct: 853 AEITESTFWAEVEELCSWTSNNKPFEDIKERVLKLEQD------IKMWTDKEVLT 999


>BQ139859 similar to GP|8777484|dbj contains similarity to RNA-binding
           protein~gene_id:K15M2.15 {Arabidopsis thaliana}, partial
           (29%)
          Length = 562

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 15/40 (37%), Positives = 24/40 (59%), Gaps = 4/40 (10%)
 Frame = +3

Query: 325 LGNPEVRKVVDQSIQEYLTEYLEL----HPDVLDSVLSKA 360
           L + ++RK++    QE L + L+     HPD+LD+V S A
Sbjct: 165 LTSDDIRKILQPFTQEQLLDLLQSASLQHPDILDAVRSVA 284


>BF646560 similar to PIR|T08978|T08 serine proteinase homolog F6G3.50 -
           Arabidopsis thaliana, partial (23%)
          Length = 573

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +2

Query: 10  GLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMH 58
           G  H     + +        FAS +D   H   + SIA    GIP  MH
Sbjct: 293 GAQHFAQAAIASGAFNPSIDFASPLDGDGHGSHTTSIAAGNNGIPVRMH 439


>TC86535 similar to GP|9758076|dbj|BAB08520.1 contains similarity to RNA
           binding protein~gene_id:MNF13.1 {Arabidopsis thaliana},
           partial (48%)
          Length = 1555

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 11/19 (57%), Positives = 13/19 (67%)
 Frame = +1

Query: 76  GGKFGGINSGYSVSGGLHG 94
           GG FGG+  GYS SG  +G
Sbjct: 865 GGGFGGVGGGYSRSGSAYG 921


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.317    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,935,494
Number of Sequences: 36976
Number of extensions: 198850
Number of successful extensions: 887
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of query: 622
length of database: 9,014,727
effective HSP length: 102
effective length of query: 520
effective length of database: 5,243,175
effective search space: 2726451000
effective search space used: 2726451000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)